View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18789_low_7 (Length: 447)
Name: NF18789_low_7
Description: NF18789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18789_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 55271051 - 55270617
Alignment:
| Q |
1 |
ctccagcctgaactgtacttatgggnnnnnnntgagtgtttttagtcnnnnnnntaggactaaaattgaacaaaatttatgtaagactaaacttgaaaat |
100 |
Q |
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| T |
55271051 |
ctccagcctgaaccgtacttatgggacaaaaatgagtgtttttagtcaagaaaataggactaaaattgaacaaaatttatgtaagactaaacttgaaaat |
55270952 |
T |
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| Q |
101 |
ttgtcttattttattttgttaacttagttatgcggaattaggtacttctattgatgttattactannnnnnncttatcacatggatttaatttctttgaa |
200 |
Q |
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| T |
55270951 |
ttgtcttattttattttgttaacttagttatgcggaattaggtact---attgatgttattactatttttttcttatcacatggatttattttctttgaa |
55270855 |
T |
|
| Q |
201 |
ttcttataaactatttaattacgtgatcttatt----gttagattatggggtgacttcgtatgatgttggagatggctttggacattttgcaattgcaac |
296 |
Q |
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|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55270854 |
ttcttataaactgtttaattacgtgatcttattaattgttagattatggggtgacttcgtatgatgttggagatggctttggacattttgcaattgcaac |
55270755 |
T |
|
| Q |
297 |
tcaagatgtaagacaagagtattctaacttcacataagcttgtgatttgtgaagagaatgaacattgtaattaacattgcttcaatttttattttaggtt |
396 |
Q |
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| T |
55270754 |
tcaagatgtaagacaagagtattctaacttcacataagcttgtgatttgtgaagagaatgaacattgtaattaacattgcttcaatttttattttaggtt |
55270655 |
T |
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| Q |
397 |
tacaaattggttgagcacattcgtgctaaaggtggaaa |
434 |
Q |
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| T |
55270654 |
tacaaattggttgagcacattcgtgctaaaggtggaaa |
55270617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 179 - 435
Target Start/End: Complemental strand, 55264012 - 55263752
Alignment:
| Q |
179 |
acatggatttaatttctttgaattcttataaactatttaattacgtgatcttatt----gttagattatggggtgacttcgtatgatgttggagatggct |
274 |
Q |
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| T |
55264012 |
acatggatttattttctttgaattcttgtaaactgtttaattatacgattttattaattgttagattatggggtgacttcgtatgatgttggagatggct |
55263913 |
T |
|
| Q |
275 |
ttggacattttgcaattgcaactcaagatgtaagacaagagtattctaacttcacataagcttgtgatttgtgaagagaatgaacattgtaattaacatt |
374 |
Q |
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| T |
55263912 |
ttggacattttgcaattgcaactcaagatgtaagacaagagtattctaacttcacataagcttgtgatttgtgaagagaatgaacattgtaattaacatt |
55263813 |
T |
|
| Q |
375 |
gcttcaatttttattttaggtttacaaattggttgagcacattcgtgctaaaggtggaaat |
435 |
Q |
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| T |
55263812 |
gcttcaatttttattttaggtttacaaattggttgagcacattcgtgctaaaggtggaaat |
55263752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 308
Target Start/End: Complemental strand, 8302780 - 8302709
Alignment:
| Q |
237 |
agattatggggtgacttcgtatgatgttggagatggctttggacattttgcaattgcaactcaagatgtaag |
308 |
Q |
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||||||||||||||| ||||| ||| ||||| ||| |||||||||||||| || || |||| ||||||||| |
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| T |
8302780 |
agattatggggtgacctcgtacgatattggaactggttttggacattttgctatcgctactccagatgtaag |
8302709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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