View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18789_low_8 (Length: 395)
Name: NF18789_low_8
Description: NF18789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18789_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 16 - 383
Target Start/End: Original strand, 27509824 - 27510189
Alignment:
| Q |
16 |
atttcctcaatacccaacttggtagcagaaagtacacaaggcaaataataagagtaaatctcacaatttgttgattactttatcatcaaatcactaaagt |
115 |
Q |
| |
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||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27509824 |
atttccttaatacccaacttcgtagcagaaagtacacaaggcaaataataagagtacatctcacaatttgttgattactttatcatcaaatcactaaagt |
27509923 |
T |
|
| Q |
116 |
ggtaaaaagtacacacaaccaaaagagtacatttctcaactcagaatagaaccaactctataatgctttgaaaacaaaaaatatgaagcggcataattaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
27509924 |
ggtaaaaagtacacacaaccaaaagagtacatttctcaactcagaatagaacca-ctctataatgctttgaaaacaaaa-atatgaagccgcataattaa |
27510021 |
T |
|
| Q |
216 |
tattactaattcttctagaaatactgcttaaattgataagatggaccattttctccaatgcttgcagatggaggcatttttgttctcagcaccaacattg |
315 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27510022 |
tattactaattcttccagaaatactgcttaaattgataagatggaccattttctccaatgcttgcagatggaggcatttttgttctcagcaccaacattg |
27510121 |
T |
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| Q |
316 |
gaggcgcacaaagatagacaaccctattcttagctgctcctgtgacacctaatttgatctctgctcct |
383 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||| |
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| T |
27510122 |
gaggcgcacaaagatagacaaccctattgttagctgctcccgtgacacctaatttgatctttgctcct |
27510189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 383
Target Start/End: Complemental strand, 27271579 - 27271209
Alignment:
| Q |
17 |
tttcctcaatacccaacttggtagcagaaagtacacaaggcaaataataagagtaaatctcacaatttgttgattactttatcatcaaatcactaaagtg |
116 |
Q |
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|||||| ||| || ||||||| ||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27271579 |
tttccttaatgccgaacttggcagcagaaagtacataaggcaactaataagagtacatctcacaatttgttgattacttaatcatcaaatcactaaagtg |
27271480 |
T |
|
| Q |
117 |
gtaaaaagtacacacaaccaaaagagtacatttctcaactcagaatagaaccaactctataatgctttgaaaacaaaaaatatgaagcggcataattaat |
216 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||| ||||| ||| |||||| |
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| T |
27271479 |
ctaaaaagtacacacaaccaatagagtacatttctcaactcagaatagaacca---ctctaatgctttgaaaac-aaaaatataaagcgacatgattaat |
27271384 |
T |
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| Q |
217 |
attactaattcttctagaaatactgcttaaattgataagatggaccattttctccaatgcttgcagatggaggcatttttgttctcagcaccaacattgg |
316 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
27271383 |
attactaattcttccagaaatagtgcttaaattgataagatggaccatttcctccagtgcttgctgatggaggcatttttgttctcaacaccaacattgg |
27271284 |
T |
|
| Q |
317 |
aggcgcacaaagatagacaaccct--------attcttagctgctcctgtgacacctaatttgatctctgctcct |
383 |
Q |
| |
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|||||||||| ||||||||||||| ||| ||||||||||| ||||||||||||||||| | ||||||| |
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| T |
27271283 |
aggcgcacaatgatagacaaccctatgtccccattgttagctgctcccgtgacacctaatttgatatttgctcct |
27271209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 16 - 383
Target Start/End: Complemental strand, 39211112 - 39210744
Alignment:
| Q |
16 |
atttcctcaatacccaacttggtagcagaaagtacacaaggcaaataataagagtaaatctcacaatttgttgattactttatcatcaaatcactaaagt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39211112 |
atttcctcaatacccaacttggtagcagaaagtacacaaggcaaataataagagtacatctcacaatttgttaattactttatcatcaaatcactaaagt |
39211013 |
T |
|
| Q |
116 |
ggtaaaaagtacacacaaccaaaagagtacatttctcaactcagaatagaaccaactctataatgctttgaaaacaaaaaatatgaagcggcataattaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
39211012 |
ggtaaaaagtacacacaaccaaaagagtacatttctcaactcagaatagaacca-ctctataatgctttgaaaacaaaaa-tatgaagtggcataattaa |
39210915 |
T |
|
| Q |
216 |
ta---ttactaattcttctagaaatactgcttaaattgataagatggaccattttctccaatgcttgcagatggaggcatttttgttctcagcaccaaca |
312 |
Q |
| |
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|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39210914 |
tactattactaattcttccagaaatactgcttaaattgataagatggaccattttctccaatgcttgcagatggaggcatttttgttctcagcaccaaca |
39210815 |
T |
|
| Q |
313 |
ttggaggcgcacaaagatagacaaccctattcttagctgctcctgtgacacctaatttgatctctgctcct |
383 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
39210814 |
ttggaggcgcacaaagatagacaaccctattgttagctgctcctgtgacacctaatttgatctttgctcct |
39210744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 29707277 - 29707587
Alignment:
| Q |
17 |
tttcctcaatacccaacttggtagcagaaagtacacaaggcaaataataagagtaaatctcacaatttgttgattactttatcatcaaatcactaaagtg |
116 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29707277 |
tttccttaatacccaacttggtagcagaaagtacataaggcaactaataagagtacatctcacaatttgttgattacttaatcatcaaatcactaaagtg |
29707376 |
T |
|
| Q |
117 |
gtaaaaagtacacacaaccaaaagagtacatttctcaactcagaatagaaccaactctataatgctttgaaaacaaaaaatatgaagcggcataattaat |
216 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||| ||||| ||| |||||| |
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| T |
29707377 |
ctaaaaagtacacacaaccaatagagtacatttctcaactcagaatagaacca---ctctaatgctttgaaaac-aaaaatataaagcgacatgattaat |
29707472 |
T |
|
| Q |
217 |
attactaattcttctagaaatactgcttaaattgataagatggaccattttctccaatgcttgcagatggaggcatttttgttctcagcaccaacattgg |
316 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29707473 |
attactaattcttcaagaaatactacttaaattgataagatggaccatttcctccagtgcttgcagatggaggcatttttgttctcagcaccaacattgg |
29707572 |
T |
|
| Q |
317 |
aggcgcacaaagata |
331 |
Q |
| |
|
|||||||||| |||| |
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| T |
29707573 |
aggcgcacaatgata |
29707587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 42093380 - 42093510
Alignment:
| Q |
29 |
ccaacttggtagcagaaa-gtacacaaggcaaataataagagtaaatctcacaatttgttgattactttatcatcaaatcactaaagtggtaaaaagtac |
127 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||| |||||| || | ||||||||||||||||||||||| |||||||||||||| ||||| | |||||||| |
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| T |
42093380 |
ccaacttggtagcagaaaagtacataaggcaactaataaaaggacatctcacaatttgttgattacttaatcatcaaatcacttaagtgcttaaaagtac |
42093479 |
T |
|
| Q |
128 |
acacaaccaaaagagtacatttctcaactca |
158 |
Q |
| |
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| |||||||| |||||||||||||||||| |
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|
| T |
42093480 |
aactaaccaaaacagtacatttctcaactca |
42093510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 221 - 375
Target Start/End: Complemental strand, 31949887 - 31949733
Alignment:
| Q |
221 |
ctaattcttctagaaatactgcttaaattgataagatggaccattttctccaatgcttgcagatggaggcatttttgttctcagcaccaacattggaggc |
320 |
Q |
| |
|
||||||||| ||||| ||||| |||| ||||||| ||||||||||| ||||||| | ||||||||||| |||||| ||| ||||||||||||||| |
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| T |
31949887 |
ctaattctttcagaaaagctgctcaaatcgataagacggaccattttcaccaatgcctatagatggaggcaattttgtcttcaacaccaacattggaggt |
31949788 |
T |
|
| Q |
321 |
gcacaaagatagacaaccctattcttagctgctcctgtgacacctaatttgatct |
375 |
Q |
| |
|
||||| ||||| |||||| |||| || ||||||| |||||||| | |||||||| |
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|
| T |
31949787 |
gcacatagatacacaaccttattgctatctgctcccgtgacaccaagtttgatct |
31949733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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