View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18789_low_9 (Length: 389)
Name: NF18789_low_9
Description: NF18789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18789_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 26 - 335
Target Start/End: Complemental strand, 46220137 - 46219828
Alignment:
| Q |
26 |
acatcatttattcacttttaaaaattannnnnnngctgtttgataacaacaaaaataattggagaatatcttgcgattattctttgcattgagcccaatt |
125 |
Q |
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| T |
46220137 |
acatcatttattcacttttaaaaattatttttttgctgtttgataacaacaaaaataattgaagaatatcttgcgattattctttgcattgagcccaatt |
46220038 |
T |
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| Q |
126 |
ttcaatctagtgaatcattattaaatcaagctttgataacttcacttaattatgtgtcgtatatgttgattgcgttctcatcctaaatttgtggttgtta |
225 |
Q |
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| T |
46220037 |
ttcaatctagtgaatcattattaaatcaagctttgataacttcacttaattatgtgtcgtatatgttgattgcgttctcatcctaaatttgtggttgtta |
46219938 |
T |
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| Q |
226 |
atttgtatgtgtcattctgaatggttgctctgctgcttttgaaggtattgtagtcgtagcactgggagatgaaaatgaaatatttctctttgtttaagct |
325 |
Q |
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| T |
46219937 |
atttgtatgtgtcattctgaatggttgctctgctgcttttgaaggtattgtagtcgtagcagtgggagatgaaaatgaaatatttctctttgtttaagct |
46219838 |
T |
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| Q |
326 |
gataaattca |
335 |
Q |
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| T |
46219837 |
gataaattca |
46219828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 335
Target Start/End: Complemental strand, 46215654 - 46215516
Alignment:
| Q |
189 |
tgttgattgcgttctcatcctaaatttgtggttgttaatttgtatgtgtcattctgaatggttgctctgctgcttttgaaggtattgtagtcgtagcact |
288 |
Q |
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| T |
46215654 |
tgttgattgcgttctcatcttgaatttgtggttcataatttggatgtgtcgatctgaatggtcgttat-ttgcttttggaggtattgtagtc------at |
46215562 |
T |
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| Q |
289 |
gggagatgaaaatgaaatatttctctttgtttaagctgataaattca |
335 |
Q |
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| T |
46215561 |
gggagatgaagatgaaata-ttctctttgcttatgctgctaaattca |
46215516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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