View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1878_high_1 (Length: 535)
Name: NF1878_high_1
Description: NF1878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1878_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 44 - 517
Target Start/End: Complemental strand, 16230890 - 16230418
Alignment:
| Q |
44 |
ctcactgggagtaggtgtgctgtcgatttccaccgagtttctgttgtctattatgccatatattatggagtctggctcttatgatatttgaccggcttct |
143 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||| ||||||| |
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| T |
16230890 |
ctcattgggagtaggtgtgctgtcgatttccaccgagtttctgttgtctattatgccatagattatggagtctggctcatctgatatttgactggcttct |
16230791 |
T |
|
| Q |
144 |
aagcctttcgagagaatcattcattttactgttagaagtaaaatcataaatggaatagttccttttcttaccaactgttgtaattgaggactttgttagc |
243 |
Q |
| |
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| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
16230790 |
a-gcctttcgagagaatcattcattttagtgttagaagtaaaatcataaatggcatagttccttttctcaccgactgttgtaattgaggactttgttagc |
16230692 |
T |
|
| Q |
244 |
ttcccttgatcatctgttagctcatcgactttatttttgccatttgtccagaatttagttgtgtattgtatagcttttccatcagtaggaatagcatctt |
343 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
16230691 |
ttcctttgatcatctgttagctcatcgactttatttttgccatttgtccagaattcagttgtgtattgtatatctttcacatcagtaggaatagcatctt |
16230592 |
T |
|
| Q |
344 |
tggttagagtatgcgtactggaatttaatcaaatgtcgtggtcaaattcagttatgccttgcatatcctttccaccagtaggaataagatccatgtcgag |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
16230591 |
tggttagagtatgcgtactggaatttaatcaaatgtcgtggtcgaattcagttatgccttgcatatcctttccaccagtaggagtaagatccatgtcgag |
16230492 |
T |
|
| Q |
444 |
atattgcatcctggatttcaaaccagtggcaattttcttcaggggcctggtggagtatggtgtgatgtggatat |
517 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16230491 |
atattgcatcctggatttcaaaccagtggcaattttcttcaggggcctggtggagtatggtgtgatgtggatat |
16230418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 63 - 517
Target Start/End: Complemental strand, 34688638 - 34688186
Alignment:
| Q |
63 |
ctgtcgatttccaccgagtttctgttgtctattatgccatatattatggagtctggctcttatgatatttgaccggcttctaagcctttcgagagaatca |
162 |
Q |
| |
|
|||||||| |||||| |||||||||||||||| | |||||| |||||||||||| ||| | |||||||||||| |||||||||||||||||| |||||| |
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|
| T |
34688638 |
ctgtcgatgtccacctagtttctgttgtctatcaggccatagattatggagtctttctcatctgatatttgaccagcttctaagcctttcgagggaatca |
34688539 |
T |
|
| Q |
163 |
ttcattttactgttagaagtaaaatcataaatggaatagttccttttcttaccaactgttgtaattgaggactttgttagcttcccttgatcatctgtta |
262 |
Q |
| |
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|| ||| | | |||||||||||||||||| | | |||| |||||| | |||| |||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
34688538 |
tt----ttagtctcagaagtaaaatcataaattgcgtggttctttttctcagtaacttttgtaattgaggacttcgttagcttcccttgatcatctgtta |
34688443 |
T |
|
| Q |
263 |
---gctcatcgactttatttttgccatttgtccagaatttagttgtgtattgtatagcttttccatcagtaggaatagcatctttggttagagtatgcgt |
359 |
Q |
| |
|
|||||| |||||| |||||| ||||||||||| ||| ||||||| | ||||| ||||||||| ||||||||||||||||||||||||||||||| | |
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|
| T |
34688442 |
ttagctcattgactttctttttggcatttgtccaggattcggttgtgtttcgtatatcttttccataagtaggaatagcatctttggttagagtatgcat |
34688343 |
T |
|
| Q |
360 |
actggaatttaatcaaatgtcgtggtcaaattcagttatgccttgcatatcctttccaccagtaggaataagatccatgtcgagatattgcatcctggat |
459 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||| | ||||||||| |||||||||||||||||| |
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|
| T |
34688342 |
actggaatttaatcaagtgtcgtggtcaaattcagttatgccttgcatatcctctccctcagtaggaatta-atccatgtcaagatattgcatcctggat |
34688244 |
T |
|
| Q |
460 |
ttcaaaccagtggcaattttcttcaggggcctggtggagtatggtgtgatgtggatat |
517 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||| |
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|
| T |
34688243 |
ttcaaaccaggagcaattttcttcaggagcctggtggagtatgctgtgatgtggatat |
34688186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 63 - 517
Target Start/End: Complemental strand, 34711050 - 34710598
Alignment:
| Q |
63 |
ctgtcgatttccaccgagtttctgttgtctattatgccatatattatggagtctggctcttatgatatttgaccggcttctaagcctttcgagagaatca |
162 |
Q |
| |
|
|||||||| |||||| |||||||||||||||| | |||||| |||||||||||| ||| | |||||||||||| |||||||||||||||||| |||||| |
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|
| T |
34711050 |
ctgtcgatgtccacctagtttctgttgtctatcaggccatagattatggagtctttctcatctgatatttgaccagcttctaagcctttcgagggaatca |
34710951 |
T |
|
| Q |
163 |
ttcattttactgttagaagtaaaatcataaatggaatagttccttttcttaccaactgttgtaattgaggactttgttagcttcccttgatcatctgtta |
262 |
Q |
| |
|
|| ||| | | |||||||||||||||||| | | |||| |||||| | |||| |||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
34710950 |
tt----ttagtctcagaagtaaaatcataaattgcgtggttctttttctcagtaacttttgtaattgaggacttcgttagcttcccttgatcatctgtta |
34710855 |
T |
|
| Q |
263 |
---gctcatcgactttatttttgccatttgtccagaatttagttgtgtattgtatagcttttccatcagtaggaatagcatctttggttagagtatgcgt |
359 |
Q |
| |
|
|||||| |||||| |||||| ||||||||||| ||| ||||||| | ||||| ||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
34710854 |
ttagctcattgactttctttttggcatttgtccaggattcggttgtgtttcgtatatcttttccataagtaggaatagcatctttggttagagtatgcat |
34710755 |
T |
|
| Q |
360 |
actggaatttaatcaaatgtcgtggtcaaattcagttatgccttgcatatcctttccaccagtaggaataagatccatgtcgagatattgcatcctggat |
459 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||| | ||||||||| |||||||||||||||||| |
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|
| T |
34710754 |
actggaatttaatcaagtgtcgtggtcaaattcagttatgccttgcatatcctctccctcagtaggaatta-atccatgtcaagatattgcatcctggat |
34710656 |
T |
|
| Q |
460 |
ttcaaaccagtggcaattttcttcaggggcctggtggagtatggtgtgatgtggatat |
517 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
34710655 |
ttcaaaccaggagcaattttcttcaggagcctggtggagtatgctgtgatgtggatat |
34710598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 52 - 239
Target Start/End: Original strand, 35564848 - 35565035
Alignment:
| Q |
52 |
gagtaggtgtgctgtcgatttccaccgagtttctgttgtctattatgccatatattatggagtctggctcttatgatatttgaccggcttctaagccttt |
151 |
Q |
| |
|
|||||| ||| ||||| ||||||| | |||||||| |||||| |||| ||| || |||||||||||||| | |||||||||||| ||| || ||||||| |
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|
| T |
35564848 |
gagtagatgtactgtcaatttccaatgtgtttctgtcgtctatcatgcaatagatgatggagtctggctcatctgatatttgaccagctccttagccttt |
35564947 |
T |
|
| Q |
152 |
cgagagaatcattcattttactgttagaagtaaaatcataaatgg----aatagttccttttcttaccaactgttgtaattgaggactttgt |
239 |
Q |
| |
|
| ||||| |||||||| | |||||||| ||||||||||| | ||||||| |||||| || ||||| ||||| |||||||||||| |
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|
| T |
35564948 |
catgagaa----tcattttagtcttagaagtcaaatcataaatcgcatatatagttctttttctcactaactgctgtaaatgaggactttgt |
35565035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 108 - 239
Target Start/End: Original strand, 35546948 - 35547075
Alignment:
| Q |
108 |
atggagtctggctcttatgatatttgaccggcttctaagcctttcgagagaatcattcattttactgttagaagtaaaatcataaatggaatagttcctt |
207 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||| || |||||||| |||||||||| ||| | |||||||| ||||||||||| ||||||| || |
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|
| T |
35546948 |
atggagtctggctcatctgatatttgaccagctccttagcctttcatgagaatcatt----ttagtcttagaagtcaaatcataaatcatatagttcttt |
35547043 |
T |
|
| Q |
208 |
ttcttaccaactgttgtaattgaggactttgt |
239 |
Q |
| |
|
|||| | |||| ||||||||||||||||||| |
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|
| T |
35547044 |
ttctcagtaacttttgtaattgaggactttgt |
35547075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 511
Target Start/End: Complemental strand, 28914176 - 28914147
Alignment:
| Q |
482 |
tcaggggcctggtggagtatggtgtgatgt |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28914176 |
tcaggggcctggtggagtatggtgtgatgt |
28914147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 326 - 458
Target Start/End: Complemental strand, 46519909 - 46519777
Alignment:
| Q |
326 |
cagtaggaatagcatctttggttagagtatgcgtactggaatttaatcaaatgtcgtggtcaaattcagttatgccttgcatatcctttccaccagtagg |
425 |
Q |
| |
|
|||||||||||| || ||||| |||||| || ||||||||||||||| ||| ||||||||||||||||| ||||||| ||||||| |||| |||||| |
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|
| T |
46519909 |
cagtaggaataggctccttggtgagagtaggcatactggaatttaatctgatgccgtggtcaaattcagttctgccttgtatatcctctccattagtagg |
46519810 |
T |
|
| Q |
426 |
aataagatccatgtcgagatattgcatcctgga |
458 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
46519809 |
aataggatccatgtcgagatattgcatcctgga |
46519777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 89 - 297
Target Start/End: Complemental strand, 46520115 - 46519911
Alignment:
| Q |
89 |
gtctattatgccatatattatggagtctggctcttatgatatttgaccggcttctaagcctttcgagagaatcattcattttactgttagaagtaaaatc |
188 |
Q |
| |
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|||||| |||||||| |||| ||| |||||||| ||||||||| |||| |||||||||||||||||| |||||||| ||| | |||||| ||||| |
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|
| T |
46520115 |
gtctatcatgccatagattagggaatctggctcatatgatattcgaccagcttctaagcctttcgagggaatcatt----ttaggctcagaagtcaaatc |
46520020 |
T |
|
| Q |
189 |
ataaatggaatagttccttttcttaccaactgttgtaattgaggactttgttagcttcccttgatcatctgttagctcatcgactttatttttgccattt |
288 |
Q |
| |
|
|||||| |||||| ||||| || ||| ||||||| ||||||||||||||||||| |||||||| ||||| ||||||| |||| |||||| ||||| |
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|
| T |
46520019 |
ataaatcacgtagttcgttttcccactaacagttgtaactgaggactttgttagcttctcttgatcaaatgttacctcatcggctttctttttggcattt |
46519920 |
T |
|
| Q |
289 |
gtccagaat |
297 |
Q |
| |
|
||||||||| |
|
|
| T |
46519919 |
gtccagaat |
46519911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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