View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1878_high_16 (Length: 269)
Name: NF1878_high_16
Description: NF1878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1878_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 26217865 - 26218114
Alignment:
| Q |
1 |
ttgagtgatgcaaaatatttttaaaacttaagaagacatgtcaggccagtcaatcaattttcaaaagttagaaatatagcgtagtaggaatatcacatca |
100 |
Q |
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| T |
26217865 |
ttgagtgatgcaaaatatttttaaaacttaagaagacatgtcaggccagtcaatcaattttcaaaagttaaaaatatagcatagtaggaatatcacatca |
26217964 |
T |
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| Q |
101 |
ccgatgaaagattctaattcttacattcttgggatgagacaagttttaggtagtggaaaatatcttggtctcctattactggtaattcgagnnnnnnnnc |
200 |
Q |
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| T |
26217965 |
ccggtgaaagattctaattcttacattcttggggtgagacaagttttaggtagtggaaaatatctgggtctcctattactggtaagtcgagaaaaaaaac |
26218064 |
T |
|
| Q |
201 |
accttcaaattcatctaagatagaatttgaaaaaagatcaactcatgaagt |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26218065 |
accttcaaattcatctaagatagaatttgaaaaaagat-aactcatgaagt |
26218114 |
T |
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