View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1878_high_5 (Length: 447)

Name: NF1878_high_5
Description: NF1878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1878_high_5
NF1878_high_5
[»] chr6 (5 HSPs)
chr6 (18-442)||(14585745-14586175)
chr6 (15-365)||(14610701-14611053)
chr6 (376-442)||(14620640-14620706)
chr6 (345-437)||(31706348-31706440)
chr6 (345-427)||(22532104-22532186)
[»] scaffold0048 (1 HSPs)
scaffold0048 (345-419)||(64220-64294)
[»] chr4 (6 HSPs)
chr4 (347-436)||(55261568-55261657)
chr4 (375-435)||(9690001-9690061)
chr4 (344-427)||(32348778-32348861)
chr4 (375-425)||(53569598-53569648)
chr4 (345-427)||(56337969-56338051)
chr4 (342-399)||(34317976-34318033)
[»] chr7 (2 HSPs)
chr7 (346-427)||(30802246-30802327)
chr7 (376-427)||(27724606-27724657)
[»] chr5 (3 HSPs)
chr5 (344-403)||(24177224-24177283)
chr5 (342-424)||(13735356-13735438)
chr5 (344-425)||(5909533-5909614)
[»] chr3 (4 HSPs)
chr3 (345-419)||(15792758-15792832)
chr3 (375-436)||(4963942-4964003)
chr3 (343-416)||(5789950-5790023)
chr3 (343-440)||(34828993-34829090)
[»] chr2 (3 HSPs)
chr2 (347-425)||(31265814-31265892)
chr2 (343-409)||(44941283-44941349)
chr2 (375-436)||(6822992-6823053)
[»] chr1 (1 HSPs)
chr1 (376-440)||(52028258-52028322)


Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 442
Target Start/End: Original strand, 14585745 - 14586175
Alignment:
Q  18 tcatacctgtggtaaaccaaaggagataaatttatctgatacataggattcaaagtcatgatggttgagcacacgaggaaggtttcaacatcaatttcta 117  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14585745 tcatacctgtggtaaaccaaaggagataaattcatcagatacataggattcaaagtcatgatggttgagcacacgaggaaggtttcaacatcaatttcta 14585844  T
Q  118 aaaaccatttattttttggttagatcttatggaattcaaagaagggannnnnnnnn-----caaattcattacattatggaatggttaccacaaaaat-- 210  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||              ||||||||||||||||||||||| ||||||||||||       
T  14585845 aaaaccatttattttttggttagatcttatggatttcaaagaagggattttttttttctttcaaattcattacattatggaatgattaccacaaaaaaaa 14585944  T
Q  211 ttcattgtaaaaaatctatctttaaaattattagagtctgataatgaaaatgattgcgagattgtggtaacttgtgttgctttttctacccaacatggtg 310  Q
    || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||    
T  14585945 tttattgtaaaaaatctatctttaaaattattagagtctaataatgaaaatgattgcgagattgtggtaacttgtgatgctttttctacccaacacg-tg 14586043  T
Q  311 ttaaatatttggtgatagatttttatgatcactttggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatccttta 410  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||  ||||||||| ||||||||||||||| |||||||||     
T  14586044 ttaaatatttggtgatagatttttatgatcgctttggtggctgaaaactaataatgccacatttgtgtatggtgcttagagatggtggtcggatcctttg 14586143  T
Q  411 ctttgtttgtgtatcgatcgacctttgcttct 442  Q
    ||||||||| |||| ||| |||||||| ||||    
T  14586144 ctttgtttgcgtattgattgacctttgtttct 14586175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 365
Target Start/End: Original strand, 14610701 - 14611053
Alignment:
Q  15 atctcatacctgtggtaaaccaaaggagataaatttatctgatacataggattcaaagtcatgatggttgagcacacgaggaaggtttcaacatcaattt 114  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14610701 atctcatacctgtggtaaaccaaaggagataaattcatcagatacataggattcaaagtcatgatggttgagcacacgaggaaggtttcaacatcaattt 14610800  T
Q  115 ctaaaaaccatttattttttggttagatcttatggaattcaaagaaggga-nnnnnnnnncaaattcattacattatggaatggttaccac---aaaaat 210  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||          |||||||||||||||||||||||||||||||   |||||     
T  14610801 ctaaaaaccatttattttttggttagatcttatggatttcaaagaagggattttttttttcaaattcattacattatggaatggttaccacaaaaaaaaa 14610900  T
Q  211 ttcattgtaaaaaatctatctttaaaattattagagtctgataatgaaaatgattgcgagattgtggtaacttgtgttgctttttctacccaacatggtg 310  Q
    |||||||||||| |||||||||||||||||||  ||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  14610901 ttcattgtaaaagatctatctttaaaattatt--agtctgaaaatgaatatgattacgagattgtggtaacttgtgttgctttttctacccaacacggtg 14610998  T
Q  311 ttaaatatttggtgatagatttttatgatcactttggtggctgaaagctaataat 365  Q
    ||||||||||||||||||||||| |||||| |||| |||||||||||||||||||    
T  14610999 ttaaatatttggtgatagattttaatgatcgctttagtggctgaaagctaataat 14611053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 376 - 442
Target Start/End: Original strand, 14620640 - 14620706
Alignment:
Q  376 tgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcgatcgacctttgcttct 442  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| ||||| ||||||||||| ||||    
T  14620640 tgtatggttcttagagatggtggtcggatcctttgctttgtttgcgtatcaatcgacctttgtttct 14620706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 437
Target Start/End: Complemental strand, 31706440 - 31706348
Alignment:
Q  345 tggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcgatcgacctttg 437  Q
    |||||||| ||||||||||||||||| |  ||||  || ||| |||||||||||| ||| | |||| |||||||| |||||||  ||||||||    
T  31706440 tggtggctaaaagctaataatgccacgtttgtgtgcggctctcagagatggtggtcggaccttttaatttgtttgagtatcgactgacctttg 31706348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 427
Target Start/End: Complemental strand, 22532186 - 22532104
Alignment:
Q  345 tggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcga 427  Q
    |||||||| ||||||| ||| |||||||  ||||| |||||| | || ||||||||||||||| | ||||||||  |||||||    
T  22532186 tggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggttggatcctatgctttgtttaggtatcga 22532104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 345 - 419
Target Start/End: Original strand, 64220 - 64294
Alignment:
Q  345 tggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttg 419  Q
    |||||||| || || |||||||||||||  ||||| |||||| ||||||| |||| |||||||||||||||||||    
T  64220 tggtggcttaaggcaaataatgccacatttgtgtacggttctcagagatgatggtcggatcctttactttgtttg 64294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 436
Target Start/End: Complemental strand, 55261657 - 55261568
Alignment:
Q  347 gtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcgatcgaccttt 436  Q
    ||||||||||||||| || ||||| |  |||||||||||| |||||||||||||||| || ||||||||  || |||||||  |||||||    
T  55261657 gtggctgaaagctaacaaagccacttttgtgtatggttctcagagatggtggttggacccgttactttgactgggtatcgactgaccttt 55261568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 435
Target Start/End: Complemental strand, 9690061 - 9690001
Alignment:
Q  375 gtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcgatcgacctt 435  Q
    |||||||||||| | |||||||||| | | ||||||||||||||| ||||||| |||||||    
T  9690061 gtgtatggttctcaaagatggtggtcgaaccctttactttgtttgggtatcgaccgacctt 9690001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 427
Target Start/End: Original strand, 32348778 - 32348861
Alignment:
Q  344 ttggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcga 427  Q
    |||||||||||||||||| |  ||||  |  ||||| |||||| |||||||||||| |||||||||  |||||||| |||||||    
T  32348778 ttggtggctgaaagctaagaccgccatgtttgtgtacggttctcagagatggtggtcggatcctttgatttgtttgggtatcga 32348861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 425
Target Start/End: Complemental strand, 53569648 - 53569598
Alignment:
Q  375 gtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatc 425  Q
    ||||| |||||| |||||||||||| ||| ||||||||||||||| |||||    
T  53569648 gtgtacggttctcagagatggtggtcggaccctttactttgtttgggtatc 53569598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 427
Target Start/End: Original strand, 56337969 - 56338051
Alignment:
Q  345 tggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcga 427  Q
    |||||||| |||||||| |||||||| |  || ||||||||| | |||||||||||||| |  || ||||||||| |||||||    
T  56337969 tggtggctaaaagctaacaatgccacttttgtttatggttctcaaagatggtggttggaccggttgctttgtttgggtatcga 56338051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 399
Target Start/End: Complemental strand, 34318033 - 34317976
Alignment:
Q  342 ctttggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggt 399  Q
    |||||||||||||| ||||||||||||||||   |||| |||||| | ||||||||||    
T  34318033 ctttggtggctgaaggctaataatgccacattcatgtacggttctcatagatggtggt 34317976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 346 - 427
Target Start/End: Original strand, 30802246 - 30802327
Alignment:
Q  346 ggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcga 427  Q
    ||||||||||||||||||| ||||| |  ||||| |||||| ||||| |||||| ||| |||||  |||||||| |||||||    
T  30802246 ggtggctgaaagctaataacgccacgtttgtgtacggttctcagagacggtggtcggaccctttgatttgtttgggtatcga 30802327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 427
Target Start/End: Original strand, 27724606 - 27724657
Alignment:
Q  376 tgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcga 427  Q
    |||| |||||| | |||||||||| ||||||||||||||||||| |||||||    
T  27724606 tgtacggttctcaaagatggtggtcggatcctttactttgtttgggtatcga 27724657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 403
Target Start/End: Complemental strand, 24177283 - 24177224
Alignment:
Q  344 ttggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttgga 403  Q
    |||||||||||||||||| || ||||| |   ||||||||||| ||||||||||||||||    
T  24177283 ttggtggctgaaagctaacaaagccacttttatgtatggttctcagagatggtggttgga 24177224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 424
Target Start/End: Original strand, 13735356 - 13735438
Alignment:
Q  342 ctttggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttgtgtat 424  Q
    ||||||||| | |||||||||||| |||| |  ||||| || |||||||||||||||| | | |||||||| |||||| ||||    
T  13735356 ctttggtggttaaaagctaataataccacttttgtgtacggctcttagagatggtggtcgaaccctttactgtgtttgggtat 13735438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 425
Target Start/End: Original strand, 5909533 - 5909614
Alignment:
Q  344 ttggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatc 425  Q
    ||||||||||||||| ||||| ||||| |  ||||| | |||| |||||||||||| ||| |||||  |||||||| |||||    
T  5909533 ttggtggctgaaagcaaataacgccacttttgtgtacgattctcagagatggtggtcggaccctttgatttgtttgggtatc 5909614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 419
Target Start/End: Complemental strand, 15792832 - 15792758
Alignment:
Q  345 tggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttg 419  Q
    |||||||| || ||||||||||| || |  ||||| |||||| |||||||||||||||| || ||| ||||||||    
T  15792832 tggtggcttaaggctaataatgctacttttgtgtacggttctcagagatggtggttggaccccttagtttgtttg 15792758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 436
Target Start/End: Complemental strand, 4964003 - 4963942
Alignment:
Q  375 gtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcgatcgaccttt 436  Q
    ||||| |||||| |||||||||||| ||| |||||||||||| || |||||||  |||||||    
T  4964003 gtgtacggttctcagagatggtggtcggaccctttactttgtctgggtatcgactgaccttt 4963942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 416
Target Start/End: Original strand, 5789950 - 5790023
Alignment:
Q  343 tttggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgt 416  Q
    |||||||| | |||||||||||  |||| |  ||||| || ||| |||||||||||||||| ||||||||||||    
T  5789950 tttggtggttaaaagctaataacaccacttttgtgtacggctctgagagatggtggttggaccctttactttgt 5790023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 440
Target Start/End: Complemental strand, 34829090 - 34828993
Alignment:
Q  343 tttggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcgatcgacctttgctt 440  Q
    |||||||||| ||||||||||| ||||| |   |||| | |||| | |||||||||| | | |||||| | |||||| |||||||| |||||||||||    
T  34829090 tttggtggcttaaagctaataaggccacttttatgtacgattctcaaagatggtggtcgaaccctttattatgtttgagtatcgattgacctttgctt 34828993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 425
Target Start/End: Complemental strand, 31265892 - 31265814
Alignment:
Q  347 gtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatc 425  Q
    |||||| |||||| ||||| |||| |  ||||||| |||| | |||||||||| ||| ||||||||||||||| |||||    
T  31265892 gtggctaaaagctcataataccacttttgtgtatgattctcaaagatggtggtcggaccctttactttgtttgggtatc 31265814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 409
Target Start/End: Original strand, 44941283 - 44941349
Alignment:
Q  343 tttggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatccttt 409  Q
    |||||||||| |||||||| |||| |||||  ||||| |||||  |||||||||||| |||||||||    
T  44941283 tttggtggctaaaagctaacaatgtcacatttgtgtacggttcacagagatggtggtcggatccttt 44941349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 436
Target Start/End: Complemental strand, 6823053 - 6822992
Alignment:
Q  375 gtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcgatcgaccttt 436  Q
    ||||| |||||| | |||||||||| | | ||||||||||||||| |||||||| |||||||    
T  6823053 gtgtacggttctcaaagatggtggtcgaaccctttactttgtttgggtatcgattgaccttt 6822992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 440
Target Start/End: Complemental strand, 52028322 - 52028258
Alignment:
Q  376 tgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcgatcgacctttgctt 440  Q
    |||||||| || | |||||||||| ||| |||||| |||||||| || | |||||||||||||||    
T  52028322 tgtatggtactcaaagatggtggtcggaccctttattttgtttgggtttagatcgacctttgctt 52028258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University