View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1878_high_6 (Length: 430)

Name: NF1878_high_6
Description: NF1878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1878_high_6
NF1878_high_6
[»] chr3 (10 HSPs)
chr3 (7-422)||(47527896-47528311)
chr3 (7-107)||(47549895-47549995)
chr3 (308-388)||(47527666-47527746)
chr3 (275-401)||(47527785-47527911)
chr3 (143-386)||(47522269-47522506)
chr3 (15-105)||(47522589-47522679)
chr3 (209-293)||(47527827-47527911)
chr3 (195-278)||(47527644-47527727)
chr3 (195-266)||(47522191-47522262)
chr3 (272-386)||(47527599-47527716)
[»] chr7 (4 HSPs)
chr7 (31-172)||(44871616-44871757)
chr7 (282-413)||(44871849-44871980)
chr7 (208-413)||(44871973-44872181)
chr7 (203-393)||(44871902-44872095)


Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 7 - 422
Target Start/End: Complemental strand, 47528311 - 47527896
Alignment:
Q  7 cttctctctttaataccttccctcttttaccactacccaccgaattagtaacttctggtttagattgaatcacatgcttctcattttccgttgatgttga 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47528311 cttctctctttaataccttccctcttttaccactacccaccgaattagtaacttctggtttagattgaatcacatgcttctcattttccgttgatgttga 47528212  T
Q  107 tgatgtagtaaccgtggcttttttaacagaaatgaaactagaggcttcagaatcctcattagaagtaaattcaaaggatttcaaagacattgctattgct 206  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47528211 taatgtagtaaccgtggcttttttaacagaaatgaaactagaggcttcagaatcctcattagaagtaaattcaaaggatttcaaagacattgctattgct 47528112  T
Q  207 gctgcttcctcggattcatttggttgctttttcgacagtaatggagacagagaaattgtttttgatgctgcttcatcagattctctccattgctctttta 306  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47528111 gctgcttcctcggattcatttggttgctttttcggctgtaatggagacagagaaattgtttttgatgctgcttcatcagattctctccattgctctttta 47528012  T
Q  307 tctgtaatggaaacgaataaattaatgttgctgctgcttccttgcattctcgcagtcgctctttcgactgtaatggagacaagtaaaatgctcttaccac 406  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  47528011 tctgtaatggaaacgaataaattaatgttgctgctgcttcctcgcattctcgcagtcgctctttcgactgtaatggagacaagtaaaatgctcttactaa 47527912  T
Q  407 tgcttccacaggttct 422  Q
    ||||||| ||| ||||    
T  47527911 tgcttcctcagattct 47527896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 47549995 - 47549895
Alignment:
Q  7 cttctctctttaataccttccctcttttaccactacccaccgaattagtaacttctggtttagattgaatcacatgcttctcattttccgttgatgttga 106  Q
    |||| ||||||| ||| |||||||||||||||||| |||| ||||||| |||||||| || ||||||| ||||||| |||||||||||| |||| |||||    
T  47549995 cttccctctttagtactttccctcttttaccactatccactgaattagaaacttctgattcagattgactcacatgtttctcattttcctttgaagttga 47549896  T
Q  107 t 107  Q
    |    
T  47549895 t 47549895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 308 - 388
Target Start/End: Complemental strand, 47527746 - 47527666
Alignment:
Q  308 ctgtaatggaaacgaataaattaatgttgctgctgcttccttgcattctcgcagtcgctctttcgactgtaatggagacaa 388  Q
    |||||||||| | ||||| ||| || |||||||||||||||   |||||| ||||||||||||||||||||||||||||||    
T  47527746 ctgtaatggagatgaatatattgatattgctgctgcttcctcagattctctcagtcgctctttcgactgtaatggagacaa 47527666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 275 - 401
Target Start/End: Complemental strand, 47527911 - 47527785
Alignment:
Q  275 tgcttcatcagattctctccattgctcttttatctgtaatggaaacgaataaattaatgttgctgctgcttccttgcattctcgcagtcgctctttcgac 374  Q
    |||||| ||||||||||||  ||||||||| | |||||||||| ||||| |||||  ||||||||||||||| |   || ||| |||||||||  |||||    
T  47527911 tgcttcctcagattctctcggttgctctttcaactgtaatggagacgaagaaattgttgttgctgctgcttcatcagatgctctcagtcgctcaatcgac 47527812  T
Q  375 tgtaatggagacaagtaaaatgctctt 401  Q
    || |||||||||||  ||||| |||||    
T  47527811 tgaaatggagacaaagaaaatcctctt 47527785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 143 - 386
Target Start/End: Complemental strand, 47522506 - 47522269
Alignment:
Q  143 actagaggcttcagaatcctcattagaagtaaattcaaaggatttcaaagacattgctattgctgctgcttcctcggattcatttggttgctttttcgac 242  Q
    |||||||||||||||||| |||| ||||||  |||||   ||||   |||| |||| ||||||||||||||||||||||||| | ||| ||||           
T  47522506 actagaggcttcagaatcgtcatcagaagttgattcatctgattcagaagaaattgatattgctgctgcttcctcggattcactcggtcgctt------- 47522414  T
Q  243 agtaatggagacagagaaattgtttttgatgctgct---tcatcagattctctccattgctcttttatctgtaatggaaacgaataaattaatgttgctg 339  Q
      ||||||||||| |||||||||  ||| |||||||   || || |||||||||  || ||||||   | | |||||| || |||| ||| |||||||||    
T  47522413 --taatggagacaaagaaattgtagttgctgctgcttcctcctcggattctctcagtttctctttcgacggcaatggagaccaatagattgatgttgctg 47522316  T
Q  340 ctgcttccttgcattctcgcagtcgctctttcgactgtaatggagac 386  Q
    ||||||||| | |||||| | || |||||||||| ||||| ||||||    
T  47522315 ctgcttcctgggattctctcggtagctctttcgattgtaaaggagac 47522269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 47522679 - 47522589
Alignment:
Q  15 tttaataccttccctcttttaccactacccaccgaattagtaacttctggtttagattgaatcacatgcttctcattttccgttgatgttg 105  Q
    ||||| ||||| ||||||||| ||||||| ||||||| | ||| ||||| || | ||| | |||||||||||||||||||| |||||||||    
T  47522679 tttaaaacctttcctcttttatcactacctaccgaatcattaagttctgattcaaatttactcacatgcttctcattttccattgatgttg 47522589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 293
Target Start/End: Complemental strand, 47527911 - 47527827
Alignment:
Q  209 tgcttcctcggattcatttggttgctttttcgacagtaatggagacagagaaattgtttttgatgctgcttcatcagattctctc 293  Q
    ||||||||| |||||  | ||||||| |||| || |||||||||||  |||||||||| ||| |||||||||||||||| |||||    
T  47527911 tgcttcctcagattctctcggttgctctttcaactgtaatggagacgaagaaattgttgttgctgctgcttcatcagatgctctc 47527827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 278
Target Start/End: Complemental strand, 47527727 - 47527644
Alignment:
Q  195 attgctattgctgctgcttcctcggattcatttggttgctttttcgacagtaatggagacagagaaattgtttttgatgctgct 278  Q
    |||| |||||||||||||||||| |||||  |  || ||| ||||||| |||||||||||| |||||||||| ||| |||||||    
T  47527727 attgatattgctgctgcttcctcagattctctcagtcgctctttcgactgtaatggagacaaagaaattgttgttgttgctgct 47527644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 47522262 - 47522191
Alignment:
Q  195 attgctattgctgctgcttcctcggattcatttggttgctttttcgacagtaatggagacagagaaattgtt 266  Q
    |||| ||||||||||| |||||| |||||  | |||  |||||||||| | |||||||||||||||||||||    
T  47522262 attgatattgctgctgtttcctcagattctctcggtctctttttcgactgcaatggagacagagaaattgtt 47522191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 386
Target Start/End: Complemental strand, 47527716 - 47527599
Alignment:
Q  272 tgctgcttcatcagattctctccattgctcttttatctgtaatggaaacgaataaa---ttaatgttgctgctgcttccttgcattctcgcagtcgctct 368  Q
    ||||||||| ||||||||||||  | |||||||   |||||||||| || || |||   ||  ||||||||||||||||  | |||||| |||| ||||     
T  47527716 tgctgcttcctcagattctctcagtcgctctttcgactgtaatggagacaaagaaattgttgttgttgctgctgcttccacggattctctcagttgctca 47527617  T
Q  369 ttcgactgtaatggagac 386  Q
    ||||||||||||||||||    
T  47527616 ttcgactgtaatggagac 47527599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 31 - 172
Target Start/End: Original strand, 44871616 - 44871757
Alignment:
Q  31 ttttaccactacccaccgaattagtaacttctggtttagattgaatcacatgcttctcattttccgttgatgttgatgatgtagtaaccgtggctttttt 130  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| ||||||| |||||||||||| ||| |||||||    |||||||||| ||||||||    
T  44871616 ttttaccactacccaccgaatttgtaacttctggttcagattgactcacatgattctcattttccattgttgttgataccatagtaaccgtagctttttt 44871715  T
Q  131 aacagaaatgaaactagaggcttcagaatcctcattagaagt 172  Q
    ||||||| || ||| ||||| |||||||||||||| ||||||    
T  44871716 aacagaactggaacaagaggtttcagaatcctcatcagaagt 44871757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 282 - 413
Target Start/End: Original strand, 44871849 - 44871980
Alignment:
Q  282 tcagattctctccattgctcttttatctgtaatggaaacgaataaattaatgttgctgctgcttccttgcattctcgcagtcgctctttcgactgtaatg 381  Q
    |||||||||||   ||||||||| |  |||||| || | ||||||||| ||| ||||||| |||||||| |||||  ||||| |||||||||||||||||    
T  44871849 tcagattctctgggttgctctttcaaatgtaattgagaagaataaattgatgctgctgcttcttccttggattctttcagtctctctttcgactgtaatg 44871948  T
Q  382 gagacaagtaaaatgctcttaccactgcttcc 413  Q
    |||||||  ||||||||||  | |||||||||    
T  44871949 gagacaaagaaaatgctctagctactgcttcc 44871980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 208 - 413
Target Start/End: Original strand, 44871973 - 44872181
Alignment:
Q  208 ctgcttcctcggattcatttggttgctttttcgacagtaatggagacagagaaattg---tttttgatgctgcttcatcagattctctccattgctcttt 304  Q
    ||||||||||||||||  | ||||||  |||| || ||||||||||   ||||||||   || ||| ||||||||| || |||| ||||  |||||||||    
T  44871973 ctgcttcctcggattctctcggttgcactttcaactgtaatggagaagaagaaattgctgttgttgttgctgcttcctcggattttctcagttgctcttt 44872072  T
Q  305 tatctgtaatggaaacgaataaattaatgttgctgctgcttccttgcattctcgcagtcgctctttcgactgtaatggagacaagtaaaatgctcttacc 404  Q
       |||||| |||  | |||||||| |||||||||||| ||||| | |||||| | ||||||| ||||||||||||| ||||||   |||||||||| |     
T  44872073 cgactgtaaaggaggcaaataaattgatgttgctgctgtttcctcggattctcccggtcgctccttcgactgtaatgcagacaaagtaaatgctcttgct 44872172  T
Q  405 actgcttcc 413  Q
    |||||||||    
T  44872173 actgcttcc 44872181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 393
Target Start/End: Original strand, 44871902 - 44872095
Alignment:
Q  203 tgctgctgcttcctcggattcatttggttgctttttcgacagtaatggagacagagaaattgtttttgatgctgcttcatcagattctctccattgctct 302  Q
    ||||||| |||||| |||||| ||  ||  || ||||||| |||||||||||| ||||| || | | | | ||||||| || |||||||||  |||| ||    
T  44871902 tgctgcttcttccttggattctttcagtctctctttcgactgtaatggagacaaagaaaatgctctagctactgcttcctcggattctctcggttgcact 44872001  T
Q  303 tttatctgtaatggaaacgaataaat---taatgttgctgctgcttccttgcattctcgcagtcgctctttcgactgtaatggagacaagtaaa 393  Q
    || | |||||||||| | ||| ||||   |  ||||| ||||||||||| | ||| || |||| |||||||||||||||| |||| ||| ||||    
T  44872002 ttcaactgtaatggagaagaagaaattgctgttgttgttgctgcttcctcggattttctcagttgctctttcgactgtaaaggaggcaaataaa 44872095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University