View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1878_low_13 (Length: 306)
Name: NF1878_low_13
Description: NF1878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1878_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 26217873 - 26217609
Alignment:
| Q |
1 |
atcactcaagcttcaccctatgttgctttnnnnnnnttaaaagtagtaatctacaaatagaagatgagagataattagatcattagtacatatttagact |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26217873 |
atcactcaagcttcaccctatgttgctttaaaaaaattaaaagtagtaatctacaaatagaagatgagagataattagatcattagtacatatttagact |
26217774 |
T |
|
| Q |
101 |
ccgtgaatttctcctttctaatcagggctgataagccttcatcataaagaaacccataagaaagggtccccttgttgaagacctcttgcaagtatgatag |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26217773 |
ccgtgaatttctcctttctaatcagggctgataaaccttcatcataaagaaacccataagaaagggtccccttgttgaagacctcttgcaagtatgacag |
26217674 |
T |
|
| Q |
201 |
ggtccactacacttctattaacaatgacggagtaatccataattcaaacacacaacataatcgaa |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26217673 |
ggtccactacacttctattaacaatgacggagtaatccataattcaaacacacaacataatcgaa |
26217609 |
T |
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