View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1878_low_15 (Length: 299)

Name: NF1878_low_15
Description: NF1878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1878_low_15
NF1878_low_15
[»] chr4 (18 HSPs)
chr4 (136-213)||(4622798-4622875)
chr4 (12-63)||(4622952-4623003)
chr4 (136-214)||(4634232-4634311)
chr4 (136-214)||(9661802-9661881)
chr4 (150-214)||(1657656-1657721)
chr4 (150-214)||(16991835-16991900)
chr4 (143-214)||(11817028-11817100)
chr4 (174-213)||(44021652-44021691)
chr4 (172-215)||(46729004-46729047)
chr4 (172-214)||(41486561-41486603)
chr4 (155-211)||(14542601-14542658)
chr4 (150-214)||(28588524-28588589)
chr4 (150-212)||(54420800-54420863)
chr4 (172-214)||(3673609-3673651)
chr4 (178-211)||(4959664-4959697)
chr4 (143-214)||(3168996-3169068)
chr4 (175-215)||(18935648-18935688)
chr4 (136-214)||(43156725-43156805)
[»] chr5 (14 HSPs)
chr5 (136-214)||(31645778-31645857)
chr5 (136-214)||(6887264-6887343)
chr5 (150-214)||(34894002-34894067)
chr5 (136-214)||(33486656-33486735)
chr5 (150-214)||(28618567-28618632)
chr5 (173-214)||(29310435-29310476)
chr5 (172-214)||(41554472-41554514)
chr5 (142-210)||(41988139-41988208)
chr5 (172-214)||(19646127-19646169)
chr5 (179-216)||(2415393-2415430)
chr5 (142-214)||(41357993-41358066)
chr5 (143-214)||(8812238-8812310)
chr5 (142-214)||(15710495-15710570)
chr5 (172-212)||(37424979-37425019)
[»] chr1 (13 HSPs)
chr1 (136-211)||(27469821-27469897)
chr1 (136-214)||(22344998-22345077)
chr1 (142-216)||(52839378-52839453)
chr1 (150-212)||(6212974-6213037)
chr1 (136-201)||(14717341-14717407)
chr1 (171-213)||(44514077-44514119)
chr1 (150-214)||(30853869-30853934)
chr1 (142-214)||(38646539-38646612)
chr1 (144-214)||(13691844-13691916)
chr1 (172-216)||(52839507-52839551)
chr1 (173-214)||(5832220-5832261)
chr1 (150-214)||(33703595-33703660)
chr1 (178-214)||(44562835-44562871)
[»] chr7 (17 HSPs)
chr7 (136-214)||(40775216-40775295)
chr7 (171-214)||(28015341-28015384)
chr7 (145-212)||(41748589-41748657)
chr7 (172-214)||(24045318-24045360)
chr7 (172-214)||(47749720-47749762)
chr7 (172-213)||(16263373-16263414)
chr7 (150-214)||(24470358-24470423)
chr7 (150-214)||(24475306-24475371)
chr7 (178-211)||(47156388-47156421)
chr7 (172-212)||(23732481-23732521)
chr7 (175-214)||(30992909-30992948)
chr7 (153-214)||(38649444-38649506)
chr7 (143-199)||(23177683-23177740)
chr7 (178-211)||(25855309-25855342)
chr7 (150-211)||(43483558-43483619)
chr7 (150-214)||(49166890-49166955)
chr7 (172-216)||(35141837-35141881)
[»] chr3 (14 HSPs)
chr3 (136-214)||(1165482-1165561)
chr3 (150-214)||(20201144-20201209)
chr3 (150-214)||(20203326-20203391)
chr3 (136-214)||(22844000-22844079)
chr3 (136-214)||(42106060-42106139)
chr3 (136-214)||(43029632-43029711)
chr3 (153-214)||(50460160-50460222)
chr3 (142-214)||(1220301-1220374)
chr3 (150-214)||(41882494-41882559)
chr3 (150-214)||(50519753-50519818)
chr3 (136-214)||(913404-913483)
chr3 (156-214)||(1806546-1806605)
chr3 (150-215)||(43839602-43839667)
chr3 (150-214)||(22286835-22286900)
[»] chr2 (25 HSPs)
chr2 (136-214)||(3390381-3390460)
chr2 (136-214)||(25771394-25771473)
chr2 (153-214)||(6089859-6089921)
chr2 (136-214)||(27024225-27024304)
chr2 (136-214)||(40125338-40125417)
chr2 (144-213)||(3464916-3464986)
chr2 (143-213)||(25237413-25237484)
chr2 (144-201)||(31263053-31263111)
chr2 (172-214)||(37883639-37883681)
chr2 (150-214)||(10589001-10589066)
chr2 (171-212)||(15674062-15674103)
chr2 (150-214)||(25516457-25516522)
chr2 (150-214)||(41176825-41176890)
chr2 (150-214)||(44167795-44167860)
chr2 (175-214)||(7640442-7640481)
chr2 (171-214)||(16880045-16880088)
chr2 (172-214)||(26491289-26491331)
chr2 (150-215)||(43566840-43566905)
chr2 (150-214)||(3602948-3603013)
chr2 (178-211)||(9715634-9715667)
chr2 (171-212)||(17037737-17037778)
chr2 (150-214)||(25623131-25623196)
chr2 (150-214)||(27191421-27191486)
chr2 (150-214)||(27841235-27841300)
chr2 (172-213)||(42105839-42105880)
[»] chr8 (13 HSPs)
chr8 (150-214)||(31874047-31874112)
chr8 (143-214)||(9269977-9270049)
chr8 (150-213)||(13864322-13864386)
chr8 (136-211)||(16937428-16937504)
chr8 (143-214)||(23766698-23766770)
chr8 (172-214)||(10042747-10042789)
chr8 (155-211)||(44295284-44295341)
chr8 (136-214)||(15665488-15665567)
chr8 (153-214)||(9992631-9992693)
chr8 (172-210)||(27534489-27534527)
chr8 (172-214)||(37658952-37658994)
chr8 (150-214)||(36545867-36545932)
chr8 (154-198)||(39067816-39067860)
[»] chr6 (9 HSPs)
chr6 (142-214)||(32457601-32457674)
chr6 (136-214)||(16913277-16913356)
chr6 (175-214)||(19759777-19759816)
chr6 (150-212)||(33194568-33194631)
chr6 (172-214)||(12576564-12576606)
chr6 (173-214)||(32804281-32804322)
chr6 (151-211)||(34020582-34020643)
chr6 (174-214)||(548951-548991)
chr6 (136-214)||(20844956-20845036)
[»] scaffold0045 (1 HSPs)
scaffold0045 (150-212)||(9736-9799)
[»] scaffold1294 (1 HSPs)
scaffold1294 (136-211)||(729-805)
[»] scaffold0012 (1 HSPs)
scaffold0012 (136-199)||(244583-244647)


Alignment Details
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 4622875 - 4622798
Alignment:
Q  136 cgtcagcaaaactttagtttcttcttcttcatcaataaagaggggtgatttaaggtcaatttttgatccaaaatcacc 213  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4622875 cgtcaccaaaactctagtttcttcttcttcatcaataaagaggggtgatttaaggtcaatttttgatccaaaatcacc 4622798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 4623003 - 4622952
Alignment:
Q  12 atgtcatcatgaccaccaataatactgtgtgagcttggtcattaatcttgaa 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4623003 atgtcatcatgaccaccaataatactgtgtgagcttggtcattaatcttgaa 4622952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 4634232 - 4634311
Alignment:
Q  136 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||| ||||||  ||||||||||| ||||||| || |||||||||||||||||||||||||||||| ||||||||||||    
T  4634232 cgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttaaggtcaatttttgacccaaaatcaccc 4634311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 9661802 - 9661881
Alignment:
Q  136 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||| ||||||  ||||||||||| ||||||| || |||||||||||||||| ||||||||||||| ||||||||||||    
T  9661802 cgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcaccc 9661881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 1657721 - 1657656
Alignment:
Q  150 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||||| ||||||| || |||||| ||||||||| ||||||||||||| ||||||||||||    
T  1657721 tagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcaccc 1657656  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 16991835 - 16991900
Alignment:
Q  150 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||||| ||||||| || |||||| ||||||||| ||||||||||||| ||||||||||||    
T  16991835 tagtttcttctccttcatccatcaaagagcggtgatttagggtcaatttttgacccaaaatcaccc 16991900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 143 - 214
Target Start/End: Original strand, 11817028 - 11817100
Alignment:
Q  143 aaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||| |||||||||||||||| || ||||||||||| |||| ||| || |||||| ||||||||||||    
T  11817028 aaaactttaatttcttcttcttcatccatcaaagaggggtggtttagggttaagttttgacccaaaatcaccc 11817100  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 44021691 - 44021652
Alignment:
Q  174 agaggggtgatttaaggtcaatttttgatccaaaatcacc 213  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  44021691 agaggggtggtttaaggtcaatttttgatccaaaatcacc 44021652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 46729047 - 46729004
Alignment:
Q  172 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccct 215  Q
    |||||||||||||||| ||||||||||||| |||||||||||||    
T  46729047 aaagaggggtgatttagggtcaatttttgacccaaaatcaccct 46729004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 41486561 - 41486603
Alignment:
Q  172 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    |||||||||| ||||| ||||||||||||||||||||||||||    
T  41486561 aaagaggggttatttagggtcaatttttgatccaaaatcaccc 41486603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 14542658 - 14542601
Alignment:
Q  155 tcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatca 211  Q
    |||||| ||||||| || |||||||||||||||| ||||||||||||| |||||||||    
T  14542658 tcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatca 14542601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 28588524 - 28588589
Alignment:
Q  150 tagtttcttcttcttcatcaataa-agaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||||| ||||||| || | ||| |||||||||| ||||||||||||| ||||||||||||    
T  28588524 tagtttcttctccttcatccatcatagaagggtgatttagggtcaatttttgacccaaaatcaccc 28588589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 54420863 - 54420800
Alignment:
Q  150 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcac 212  Q
    ||||||||||| ||||||| |  ||||| |||||||||| ||||||||||||| ||||||||||    
T  54420863 tagtttcttctccttcatccaccaaagatgggtgatttagggtcaatttttgacccaaaatcac 54420800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 3673609 - 3673651
Alignment:
Q  172 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    |||||||||||||||| ||||||||||||| || |||||||||    
T  3673609 aaagaggggtgatttagggtcaatttttgaccccaaatcaccc 3673651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 4959697 - 4959664
Alignment:
Q  178 gggtgatttaaggtcaatttttgatccaaaatca 211  Q
    |||||||||| |||||||||||||||||||||||    
T  4959697 gggtgatttagggtcaatttttgatccaaaatca 4959664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 214
Target Start/End: Original strand, 3168996 - 3169068
Alignment:
Q  143 aaaactttagtttcttcttcttcat-caataaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    |||||| |||||| ||||||||||| ||  |||||| |||||||||  ||||||| |||| ||||||||||||    
T  3168996 aaaactctagttttttcttcttcattcaccaaagagaggtgatttagagtcaattattgacccaaaatcaccc 3169068  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 18935648 - 18935688
Alignment:
Q  175 gaggggtgatttaaggtcaatttttgatccaaaatcaccct 215  Q
    ||||||||||||||||||||||||||| | | |||||||||    
T  18935648 gaggggtgatttaaggtcaatttttgacctagaatcaccct 18935688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 43156725 - 43156805
Alignment:
Q  136 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaagg-tcaatttttgatccaaaatcaccc 214  Q
    ||||| ||||||||   |||||||| ||||||| |  |||||||||||||||| || ||||||||||| ||||||||||||    
T  43156725 cgtcaccaaaacttagttttcttctccttcatccaccaaagaggggtgatttacgggtcaatttttgacccaaaatcaccc 43156805  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 31645778 - 31645857
Alignment:
Q  136 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||| ||||||  ||||||||||| ||||||| || |||||||||||||||| ||||||||||||||||||||||||||    
T  31645778 cgtcaccaaaaccctagtttcttctccttcatccattaaagaggggtgatttagggtcaatttttgatccaaaatcaccc 31645857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 6887343 - 6887264
Alignment:
Q  136 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||| ||||||| ||||||||||| ||||||| || |||||||||||||||| ||||||||||| | ||||||||||||    
T  6887343 cgtcaccaaaactctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttaacccaaaatcaccc 6887264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 34894067 - 34894002
Alignment:
Q  150 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||||| ||||||| || |||||||||||||||| ||||||||||||| ||||||||||||    
T  34894067 tagtttcttctccttcatccatcaaagaggggtgatttacggtcaatttttgacccaaaatcaccc 34894002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 33486735 - 33486656
Alignment:
Q  136 cgtcagcaaaactttagtttcttcttcttcatcaa-taaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||| |||||| ||| |||||||  ||||||| | ||||||||||||||||| ||||||||||||| ||||||||||||    
T  33486735 cgtcaccaaaaccttaatttcttcaccttcatccactaaagaggggtgatttagggtcaatttttgacccaaaatcaccc 33486656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 28618567 - 28618632
Alignment:
Q  150 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||||| ||||||||   |||||||||||||||||||||||||||| | ||||||||||||    
T  28618567 tagtttcttctccttcatcagccaaagaggggtgatttaaggtcaatttttaacccaaaatcaccc 28618632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 29310476 - 29310435
Alignment:
Q  173 aagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  29310476 aagaggggtgatttagggtcaatttttgatccaaaatcaccc 29310435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 41554472 - 41554514
Alignment:
Q  172 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    |||||||||||||||| | ||||||||||||||||||||||||    
T  41554472 aaagaggggtgatttaggatcaatttttgatccaaaatcaccc 41554514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 41988139 - 41988208
Alignment:
Q  142 caaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatc 210  Q
    ||||||| ||||||||||| ||||| | || |||||||||||||||| | |||||||||||| |||||||    
T  41988139 caaaactctagtttcttctccttcacctatcaaagaggggtgatttaggatcaatttttgattcaaaatc 41988208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 19646169 - 19646127
Alignment:
Q  172 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||||| |||||||||||| ||||| ||||||||||||    
T  19646169 aaagaggggtggtttaaggtcaatgtttgacccaaaatcaccc 19646127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 2415393 - 2415430
Alignment:
Q  179 ggtgatttaaggtcaatttttgatccaaaatcaccctt 216  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  2415393 ggtgatttagggtcaatttttgacccaaaatcaccctt 2415430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 41357993 - 41358066
Alignment:
Q  142 caaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||| ||||||||| | ||||||  || |||||  ||||||||| ||||||||||||| ||||||||||||    
T  41357993 caaaactctagtttcttttccttcatagatcaaagataggtgatttagggtcaatttttgacccaaaatcaccc 41358066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 214
Target Start/End: Complemental strand, 8812310 - 8812238
Alignment:
Q  143 aaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    |||||| |||||||||| |||||||| |  ||| ||||||||| || ||||||||||| | ||||||||||||    
T  8812310 aaaactctagtttcttcatcttcatccaccaaaaaggggtgatatagggtcaatttttaacccaaaatcaccc 8812238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 15710495 - 15710570
Alignment:
Q  142 caaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaa--tttttgatccaaaatcaccc 214  Q
    ||||||| ||||||||| | ||||||| || ||||| |||||||||| ||||||  ||||| ||||||||||||||    
T  15710495 caaaactctagtttcttttccttcatccatcaaagatgggtgatttatggtcaattttttttatccaaaatcaccc 15710570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 37424979 - 37425019
Alignment:
Q  172 aaagaggggtgatttaaggtcaatttttgatccaaaatcac 212  Q
    |||||||||||||||| ||||||||| ||| ||||||||||    
T  37424979 aaagaggggtgatttatggtcaatttctgacccaaaatcac 37425019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 27469897 - 27469821
Alignment:
Q  136 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatca 211  Q
    ||||| ||||| | ||||||||||||||||||| || ||||||||||||||||||||||||||| || |||||||||    
T  27469897 cgtcaccaaaattctagtttcttcttcttcatccattaaagaggggtgatttaaggtcaattttcgaaccaaaatca 27469821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 22345077 - 22344998
Alignment:
Q  136 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||| ||||||  ||||||||||| ||||||| || |||||||||||||||| | ||||||||||| ||||||||||||    
T  22345077 cgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttaggttcaatttttgacccaaaatcaccc 22344998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 52839378 - 52839453
Alignment:
Q  142 caaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccctt 216  Q
    ||||||| |||||| ||||  |||||| || |||||||||||||||| ||||||||||||| ||||||||||||||    
T  52839378 caaaactctagtttgttctctttcatccattaaagaggggtgatttagggtcaatttttgacccaaaatcaccctt 52839453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 6213037 - 6212974
Alignment:
Q  150 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcac 212  Q
    ||||||||||| |||| || || |||||||||||||||| ||||||||||||| ||||||||||    
T  6213037 tagtttcttctccttcgtccatcaaagaggggtgatttatggtcaatttttgacccaaaatcac 6212974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 14717407 - 14717341
Alignment:
Q  136 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttga 201  Q
    ||||| ||||||| ||||||||||| ||||||| |  |||||||||||||||| |||||||||||||    
T  14717407 cgtcaccaaaactctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttga 14717341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 44514119 - 44514077
Alignment:
Q  171 taaagaggggtgatttaaggtcaatttttgatccaaaatcacc 213  Q
    ||||||||||||||||| ||||||||||||| |||||||||||    
T  44514119 taaagaggggtgatttagggtcaatttttgacccaaaatcacc 44514077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 30853934 - 30853869
Alignment:
Q  150 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||||| ||||||| |  ||||||| |||||| ||||||||||||||| ||||||||||||    
T  30853934 tagtttcttctccttcatccaccaaagaggtgtgattcaaggtcaatttttgacccaaaatcaccc 30853869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 38646539 - 38646612
Alignment:
Q  142 caaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||| || ||| |||| ||||||| || ||||||| |||||||| ||||||||||||| ||||||||||||    
T  38646539 caaaactctaattttttctccttcatctatcaaagaggagtgatttatggtcaatttttgacccaaaatcaccc 38646612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 13691916 - 13691844
Alignment:
Q  144 aaactttagtttcttcttcttcatcaa-taaagagggg-tgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    |||| ||| |||||||||||||||| | |||||||||| || |||| ||||||||||||| ||||||||||||    
T  13691916 aaaccttaatttcttcttcttcatccactaaagagggggtggtttagggtcaatttttgacccaaaatcaccc 13691844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 52839507 - 52839551
Alignment:
Q  172 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccctt 216  Q
    |||||||||||||||| | ||||||||||| ||||||||||||||    
T  52839507 aaagaggggtgatttatgatcaatttttgacccaaaatcaccctt 52839551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 5832220 - 5832261
Alignment:
Q  173 aagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||||||||| ||||||||||||| || |||||||||    
T  5832220 aagaggggtgatttagggtcaatttttgaccctaaatcaccc 5832261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 33703660 - 33703595
Alignment:
Q  150 tagtttcttcttcttcatcaa-taaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    |||||| |||| ||||||| | ||||||||| ||||||| ||||||||||| | ||||||||||||    
T  33703660 tagttttttctccttcatccactaaagagggatgatttatggtcaattttttacccaaaatcaccc 33703595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 44562871 - 44562835
Alignment:
Q  178 gggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  44562871 gggtgatttagggtcaatttttgacccaaaatcaccc 44562835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 40775216 - 40775295
Alignment:
Q  136 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||| ||||||  || |||||||| ||||||| || |||||||||||||||| ||||||||||||||||||||||||||    
T  40775216 cgtcaccaaaaccctaatttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgatccaaaatcaccc 40775295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 28015341 - 28015384
Alignment:
Q  171 taaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  28015341 taaagaggggtgatttagggtcaatttttgatccaaaatcaccc 28015384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 145 - 212
Target Start/End: Complemental strand, 41748657 - 41748589
Alignment:
Q  145 aactttagtttcttcttcttcat-caataaagaggggtgatttaaggtcaatttttgatccaaaatcac 212  Q
    |||| |||||||||| ||||||| || |||||||  |||||||| ||||||||||||||||||||||||    
T  41748657 aactctagtttcttcatcttcattcactaaagagatgtgatttacggtcaatttttgatccaaaatcac 41748589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 24045360 - 24045318
Alignment:
Q  172 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    |||||| ||||||||||||||||||||||| ||||||||||||    
T  24045360 aaagagtggtgatttaaggtcaatttttgacccaaaatcaccc 24045318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 47749720 - 47749762
Alignment:
Q  172 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    |||||||||||||||| ||||||||||||| ||||||||||||    
T  47749720 aaagaggggtgatttatggtcaatttttgacccaaaatcaccc 47749762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 16263373 - 16263414
Alignment:
Q  172 aaagaggggtgatttaaggtcaatttttgatccaaaatcacc 213  Q
    |||||||||||||||| | |||||||||||||||||||||||    
T  16263373 aaagaggggtgatttaggatcaatttttgatccaaaatcacc 16263414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 24470358 - 24470423
Alignment:
Q  150 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||||| ||||||| |  |||||||||||||||| || |||||||||| ||||||||||||    
T  24470358 tagtttcttctccttcatccaccaaagaggggtgatttaggggcaatttttgacccaaaatcaccc 24470423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 24475306 - 24475371
Alignment:
Q  150 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||||| ||||||| |  |||||||||||||||| || |||||||||| ||||||||||||    
T  24475306 tagtttcttctccttcatccaccaaagaggggtgatttaggggcaatttttgacccaaaatcaccc 24475371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 47156388 - 47156421
Alignment:
Q  178 gggtgatttaaggtcaatttttgatccaaaatca 211  Q
    ||||||||||||||||||||||||||||||||||    
T  47156388 gggtgatttaaggtcaatttttgatccaaaatca 47156421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 23732521 - 23732481
Alignment:
Q  172 aaagaggggtgatttaaggtcaatttttgatccaaaatcac 212  Q
    ||||||||||||||||||||||||||||||  |||||||||    
T  23732521 aaagaggggtgatttaaggtcaatttttgactcaaaatcac 23732481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 30992948 - 30992909
Alignment:
Q  175 gaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  30992948 gaggggtgatttaaggttaatttttgacccaaaatcaccc 30992909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 38649506 - 38649444
Alignment:
Q  153 tttcttcttcttcatcaa-taaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    |||||||  ||||||||| |||| ||||||||||||  |||||||||||| ||||||||||||    
T  38649506 tttcttcaccttcatcaactaaaaaggggtgatttagagtcaatttttgacccaaaatcaccc 38649444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 23177740 - 23177683
Alignment:
Q  143 aaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaattttt 199  Q
    |||||| ||||||||||| ||||||| || ||||| | ||||||||||||||||||||    
T  23177740 aaaactctagtttcttctccttcatccattaaagatgagtgatttaaggtcaattttt 23177683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 25855342 - 25855309
Alignment:
Q  178 gggtgatttaaggtcaatttttgatccaaaatca 211  Q
    |||||||||| |||||||||||||||||||||||    
T  25855342 gggtgatttagggtcaatttttgatccaaaatca 25855309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 43483558 - 43483619
Alignment:
Q  150 tagtttcttcttcttcatcaataaagaggggtgatttaaggtcaatttttgatccaaaatca 211  Q
    |||||||| | |||||||| |  |||||| |||||||| ||||||||||||||| |||||||    
T  43483558 tagtttctgcatcttcatccactaagaggagtgatttagggtcaatttttgatctaaaatca 43483619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 49166890 - 49166955
Alignment:
Q  150 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||||| ||||||| |  ||||| |||||||||| ||||||||||||| | ||||||||||    
T  49166890 tagtttcttctccttcatccaccaaagatgggtgatttagggtcaatttttgacctaaaatcaccc 49166955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 35141881 - 35141837
Alignment:
Q  172 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccctt 216  Q
    ||||| |||||||||| ||||||||||||| | ||||||||||||    
T  35141881 aaagaagggtgatttagggtcaatttttgaccaaaaatcaccctt 35141837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 1165561 - 1165482
Alignment:
Q  136 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||| ||||||  ||||||||||| ||||||| || |||||||||||||||| ||||||||||||| ||||||||||||    
T  1165561 cgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcaccc 1165482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 20201209 - 20201144
Alignment:
Q  150 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||||| ||||||| |  |||||||||||||||| ||||||||||||| ||||||||||||    
T  20201209 tagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaatcaccc 20201144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 20203391 - 20203326
Alignment:
Q  150 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||||| ||||||| |  |||||||||||||||| ||||||||||||| ||||||||||||    
T  20203391 tagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaatcaccc 20203326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 22844000 - 22844079
Alignment:
Q  136 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||| ||||||  |||||| |||| ||||||  || |||||||| ||||||||||||||||||||| ||||||||||||    
T  22844000 cgtcaccaaaaccctagtttattctccttcattcatcaaagagggctgatttaaggtcaatttttgacccaaaatcaccc 22844079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 42106060 - 42106139
Alignment:
Q  136 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||| ||||||  |||||||||| |||||||| |  |||||||||||||||| ||||||||||||| | ||||||||||    
T  42106060 cgtcaccaaaaccctagtttcttcatcttcatccaccaaagaggggtgatttagggtcaatttttgacctaaaatcaccc 42106139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 43029632 - 43029711
Alignment:
Q  136 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||| ||||||  ||||||||||| ||||||| || |||||||||||||||| | ||| ||||||| ||||||||||||    
T  43029632 cgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttaggatcattttttgacccaaaatcaccc 43029711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 50460160 - 50460222
Alignment:
Q  153 tttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    |||||||||||||||| || |||||||| |||||||||||||||||||||   ||||||||||    
T  50460160 tttcttcttcttcatccatcaaagagggatgatttaaggtcaatttttgacataaaatcaccc 50460222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 1220374 - 1220301
Alignment:
Q  142 caaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||| || |||||||| ||||| | || |||||||||||||||| | |||||||||||| |||||||||||    
T  1220374 caaaactctaatttcttctccttcacctatcaaagaggggtgatttaggatcaatttttgattcaaaatcaccc 1220301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 41882559 - 41882494
Alignment:
Q  150 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||||| ||||||| || ||||||| |||||||| ||||||||||||| ||||||| ||||    
T  41882559 tagtttcttctccttcatccatcaaagaggagtgatttagggtcaatttttgacccaaaattaccc 41882494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 50519753 - 50519818
Alignment:
Q  150 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||||| ||||||| |  ||||| |||||||||| ||||||||||||| ||||||||||||    
T  50519753 tagtttcttctccttcatccaccaaagatgggtgatttagggtcaatttttgacccaaaatcaccc 50519818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 913483 - 913404
Alignment:
Q  136 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||| |||||| ||||||||||| |||||||| |  |||||||||| ||| |  |||||||||||| ||||||||||||    
T  913483 cgtcaccaaaaccttagtttcttcatcttcatccaccaaagaggggtaattcatagtcaatttttgacccaaaatcaccc 913404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 1806605 - 1806546
Alignment:
Q  156 cttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||||||| |  ||||||||||| |||| |||||||||||||||| |||||||||    
T  1806605 cttcttcttcatccaccaaagaggggtggtttagggtcaatttttgatcccaaatcaccc 1806546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 43839667 - 43839602
Alignment:
Q  150 tagtttcttcttcttcat-caataaagaggggtgatttaaggtcaatttttgatccaaaatcaccct 215  Q
    ||||||||||| |||||| || |||||| |||||||||| ||||||||||||| ||||| |||||||    
T  43839667 tagtttcttctccttcattcactaaagatgggtgatttagggtcaatttttga-ccaaagtcaccct 43839602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 22286900 - 22286835
Alignment:
Q  150 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||||| ||||||| |  |||||||||||||||| ||||||||||||| | ||||| ||||    
T  22286900 tagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacctaaaattaccc 22286835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 3390381 - 3390460
Alignment:
Q  136 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||| ||||||  ||||||||||| ||||||| || |||||||||||||||| ||||||||||||| ||||||||||||    
T  3390381 cgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcaccc 3390460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 25771394 - 25771473
Alignment:
Q  136 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||| ||||||  ||||||||||| ||||||| || |||||||||||||||| ||||||||||||| ||||||||||||    
T  25771394 cgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcaccc 25771473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 6089859 - 6089921
Alignment:
Q  153 tttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    |||||||| ||||||| || |||||||||||||||||||||||||||||| ||||||||||||    
T  6089859 tttcttctccttcatccatcaaagaggggtgatttaaggtcaatttttgacccaaaatcaccc 6089921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 27024304 - 27024225
Alignment:
Q  136 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||| ||||||| ||||||||||| ||||||| || ||||| |||||||||| ||||| ||||||| ||||||||||||    
T  27024304 cgtcaccaaaactctagtttcttctccttcatccatcaaagatgggtgatttagggtcattttttgacccaaaatcaccc 27024225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 40125338 - 40125417
Alignment:
Q  136 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||| |||||| |||||||||||| ||||||| |  |||||||||||||||| ||| ||||||||| ||||||||||||    
T  40125338 cgtcatcaaaaccttagtttcttctccttcatccaccaaagaggggtgatttagggttaatttttgacccaaaatcaccc 40125417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 3464916 - 3464986
Alignment:
Q  144 aaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacc 213  Q
    ||||| || |||||||| ||||||| |  |||||||||||||||| |||||||||||||||||||||||||    
T  3464916 aaactctaatttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgatccaaaatcacc 3464986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 25237484 - 25237413
Alignment:
Q  143 aaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacc 213  Q
    |||||| |||||| |||| ||||||| || ||||||||||||||||  ||||| ||||||||||||||||||    
T  25237484 aaaactctagtttattctccttcatctattaaagaggggtgatttagagtcaacttttgatccaaaatcacc 25237413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 31263111 - 31263053
Alignment:
Q  144 aaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttga 201  Q
    |||||||||||| |||||||||||| || |||||||||||||||| ||||||| |||||    
T  31263111 aaactttagttttttcttcttcatccatcaaagaggggtgatttagggtcaatctttga 31263053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 37883639 - 37883681
Alignment:
Q  172 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    |||||||||||||||| ||||||||||| ||||||||||||||    
T  37883639 aaagaggggtgatttagggtcaatttttaatccaaaatcaccc 37883681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 10589001 - 10589066
Alignment:
Q  150 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    |||||||||| |||||||| |  ||| |||||||||||| ||||||||||||| ||||||||||||    
T  10589001 tagtttcttcatcttcatccaccaaaaaggggtgatttagggtcaatttttgacccaaaatcaccc 10589066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 15674103 - 15674062
Alignment:
Q  171 taaagaggggtgatttaaggtcaatttttgatccaaaatcac 212  Q
    ||||||||||||||||| ||||||||||||| ||||||||||    
T  15674103 taaagaggggtgatttagggtcaatttttgacccaaaatcac 15674062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 25516457 - 25516522
Alignment:
Q  150 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||||| ||||||| |  |||||||||||||||| ||||||| ||||| ||||||||||||    
T  25516457 tagtttcttctccttcatccaccaaagaggggtgatttagggtcaatatttgacccaaaatcaccc 25516522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 41176825 - 41176890
Alignment:
Q  150 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||||| ||||||| |  |||||||||||||||| ||||||||||||| |||||| |||||    
T  41176825 tagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaaccaccc 41176890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 44167860 - 44167795
Alignment:
Q  150 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||||| ||||||| |  ||||||||||||| || ||||||||||||| ||||||||||||    
T  44167860 tagtttcttctccttcatccaccaaagaggggtgatatatggtcaatttttgacccaaaatcaccc 44167795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 7640481 - 7640442
Alignment:
Q  175 gaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||||||| ||||||||||||| ||||||||||||    
T  7640481 gaggggtgatttagggtcaatttttgacccaaaatcaccc 7640442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 16880088 - 16880045
Alignment:
Q  171 taaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||||||||||  ||||||||||||| ||||||||||||    
T  16880088 taaagaggggtgatttttggtcaatttttgacccaaaatcaccc 16880045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 26491289 - 26491331
Alignment:
Q  172 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    |||||||||| ||||||| ||||||||||| ||||||||||||    
T  26491289 aaagaggggtaatttaagttcaatttttgacccaaaatcaccc 26491331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 43566840 - 43566905
Alignment:
Q  150 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccct 215  Q
    ||||||||||| ||||||| |  |||||||||||||| | ||||||||||||| |||||||||||||    
T  43566840 tagtttcttctccttcatccaccaaagaggggtgatt-agggtcaatttttgacccaaaatcaccct 43566905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 3602948 - 3603013
Alignment:
Q  150 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||||| ||||||| || ||||| |||||||||| |||||| ||||||  |||||||||||    
T  3602948 tagtttcttctccttcatccatcaaagatgggtgatttatggtcaacttttgactcaaaatcaccc 3603013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 9715667 - 9715634
Alignment:
Q  178 gggtgatttaaggtcaatttttgatccaaaatca 211  Q
    |||||||||| |||||||||||||||||||||||    
T  9715667 gggtgatttagggtcaatttttgatccaaaatca 9715634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 17037778 - 17037737
Alignment:
Q  171 taaagaggggtgatttaaggtcaatttttgatccaaaatcac 212  Q
    ||||||||||||||||  ||||||||||||| ||||||||||    
T  17037778 taaagaggggtgatttttggtcaatttttgacccaaaatcac 17037737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 25623196 - 25623131
Alignment:
Q  150 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||| ||||||||  || ||||||||||||||||   ||||||||||| ||||||||||||    
T  25623196 tagtttctttttcttcatacatcaaagaggggtgatttattatcaatttttgacccaaaatcaccc 25623131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 27191486 - 27191421
Alignment:
Q  150 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||||| ||||||| |  |||||||| ||||||| ||||||||||||| || |||||||||    
T  27191486 tagtttcttctccttcatccaccaaagagggatgatttagggtcaatttttgaccctaaatcaccc 27191421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 27841300 - 27841235
Alignment:
Q  150 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||||| ||||||| |  |||||||| ||||||| ||||||||||||| || |||||||||    
T  27841300 tagtttcttctccttcatccaccaaagagggatgatttagggtcaatttttgaccctaaatcaccc 27841235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 42105880 - 42105839
Alignment:
Q  172 aaagaggggtgatttaaggtcaatttttgatccaaaatcacc 213  Q
    ||||||||||| |||| ||||||||||||| |||||||||||    
T  42105880 aaagaggggtgctttagggtcaatttttgacccaaaatcacc 42105839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 31874047 - 31874112
Alignment:
Q  150 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||||| ||||||| || |||||| ||||||||| ||||||||||||| ||||||||||||    
T  31874047 tagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcaccc 31874112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 143 - 214
Target Start/End: Original strand, 9269977 - 9270049
Alignment:
Q  143 aaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    |||||| ||||||||||| ||||||| |  |||||||||||||||| | ||||||||||| ||||||||||||    
T  9269977 aaaactctagtttcttctccttcatccaccaaagaggggtgatttatgatcaatttttgacccaaaatcaccc 9270049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 13864322 - 13864386
Alignment:
Q  150 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacc 213  Q
    ||||||||||| ||||||  || ||||||||||||||||||||||| |||||| |||||||||||    
T  13864322 tagtttcttctccttcatttatcaaagaggggtgatttaaggtcaacttttgagccaaaatcacc 13864386  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 16937504 - 16937428
Alignment:
Q  136 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatca 211  Q
    ||||| ||||||  ||||||||||  ||||||| |  |||||||||||||||| |||||||||||||||||||||||    
T  16937504 cgtcatcaaaaccctagtttcttcaccttcatccaccaaagaggggtgatttagggtcaatttttgatccaaaatca 16937428  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 143 - 214
Target Start/End: Original strand, 23766698 - 23766770
Alignment:
Q  143 aaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    |||||| ||||||||||| ||||||| |  ||||||  |||||||||||||||||||||| ||||||||||||    
T  23766698 aaaactctagtttcttctacttcatccaccaaagagatgtgatttaaggtcaatttttgacccaaaatcaccc 23766770  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 10042747 - 10042789
Alignment:
Q  172 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    |||||||||||||||| ||||||||||||| ||||||||||||    
T  10042747 aaagaggggtgatttatggtcaatttttgacccaaaatcaccc 10042789  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 44295284 - 44295341
Alignment:
Q  155 tcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatca 211  Q
    |||||| ||||||| || |||||||||||||||| ||||||||||||| |||||||||    
T  44295284 tcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatca 44295341  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 15665488 - 15665567
Alignment:
Q  136 cgtcagcaaaactttagtttcttcttcttcatc-aataaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||| ||||||| |||||||||   ||||||| || |||||||||||||||| |||||| ||||||  |||||||||||    
T  15665488 cgtcaccaaaactctagtttctttcccttcatccaacaaagaggggtgatttagggtcaacttttgacacaaaatcaccc 15665567  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 9992631 - 9992693
Alignment:
Q  153 tttcttcttcttcat-caataaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    |||||||| |||||| || || || ||||||||||| ||||||||||||| ||||||||||||    
T  9992631 tttcttctccttcattcattagaggggggtgatttagggtcaatttttgacccaaaatcaccc 9992693  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 27534527 - 27534489
Alignment:
Q  172 aaagaggggtgatttaaggtcaatttttgatccaaaatc 210  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  27534527 aaagaggggtgatttagggtcaatttttgatcccaaatc 27534489  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 37658952 - 37658994
Alignment:
Q  172 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    |||||||||||||||| |||||||||||||  |||||||||||    
T  37658952 aaagaggggtgatttagggtcaatttttgacacaaaatcaccc 37658994  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 36545932 - 36545867
Alignment:
Q  150 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||||| ||||||| |  |||||||| ||||||||||||||||| ||| |||| |||||||    
T  36545932 tagtttcttctccttcatccaccaaagagggatgatttaaggtcaatttgtgacccaatatcaccc 36545867  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 39067860 - 39067816
Alignment:
Q  154 ttcttcttcttcatcaataaagaggggtgatttaaggtcaatttt 198  Q
    |||||||||||| ||  | ||||||||||||||||||||||||||    
T  39067860 ttcttcttcttcttcttttaagaggggtgatttaaggtcaatttt 39067816  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 32457601 - 32457674
Alignment:
Q  142 caaaactttagtttcttcttcttcatcaa-taaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    |||||| ||||||| |||| ||||||| | |||||||||||||||||  |||||||||||| ||||||||||||    
T  32457601 caaaaccttagttttttctccttcatctactaaagaggggtgatttagcgtcaatttttgacccaaaatcaccc 32457674  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 16913277 - 16913356
Alignment:
Q  136 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||| ||||||  ||||||||||| ||||||| |  |||||||||||||||| ||||||||||||| || |||||||||    
T  16913277 cgtcaccaaaaccctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccgaaatcaccc 16913356  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 19759777 - 19759816
Alignment:
Q  175 gaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||||||||||| ||||||||||||| ||||||||||||    
T  19759777 gaggggtgatttagggtcaatttttgacccaaaatcaccc 19759816  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 33194568 - 33194631
Alignment:
Q  150 tagtttcttcttcttcatcaata-aagaggggtgatttaaggtcaatttttgatccaaaatcac 212  Q
    ||||||||||||||||||| ||  || |  ||||||||| ||||||||||||||||||||||||    
T  33194568 tagtttcttcttcttcatccattcaatattggtgatttagggtcaatttttgatccaaaatcac 33194631  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 12576606 - 12576564
Alignment:
Q  172 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    |||||||||||||||| ||||||||||||| || |||||||||    
T  12576606 aaagaggggtgatttagggtcaatttttgaccctaaatcaccc 12576564  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 32804281 - 32804322
Alignment:
Q  173 aagaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    |||| |||||||||| ||||||||||||| ||||||||||||    
T  32804281 aagatgggtgatttagggtcaatttttgacccaaaatcaccc 32804322  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 34020582 - 34020643
Alignment:
Q  151 agtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatca 211  Q
    |||||||||||||||||| |  ||||||||||| |||| ||||||||||||| |||| ||||    
T  34020582 agtttcttcttcttcatctaccaaagaggggtggtttagggtcaatttttgacccaacatca 34020643  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 548991 - 548951
Alignment:
Q  174 agaggggtgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||| ||||| |||||||||||||||| ||||||||||||    
T  548991 agaggagtgatataaggtcaatttttgacccaaaatcaccc 548951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 20844956 - 20845036
Alignment:
Q  136 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagagggg-tgatttaaggtcaatttttgatccaaaatcaccc 214  Q
    ||||| |||||| |||||||||||| ||| ||| |  ||||||||| | ||| ||||||||||||||| ||||||||||||    
T  20844956 cgtcaccaaaaccttagtttcttctcctttatctaccaaagagggggtaattcaaggtcaatttttgacccaaaatcaccc 20845036  T

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Target: scaffold0045 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 9799 - 9736
Alignment:
Q  150 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcac 212  Q
    ||||||||||| ||||||| |  |||||||| ||||||| ||||||||||||| ||||||||||    
T  9799 tagtttcttctccttcatccaccaaagagggatgatttagggtcaatttttgacccaaaatcac 9736  T

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Target: scaffold1294 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1294
Description:

Target: scaffold1294; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 211
Target Start/End: Original strand, 729 - 805
Alignment:
Q  136 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatca 211  Q
    ||||| ||||||| ||||||||||| ||||||| |  ||| ||  |||||||||||||||||||||| | |||||||    
T  729 cgtcatcaaaactctagtttcttctccttcatccaccaaaaagatgtgatttaaggtcaatttttgaccaaaaatca 805  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 244583 - 244647
Alignment:
Q  136 cgtcagcaaaactttagtttcttcttcttcat-caataaagaggggtgatttaaggtcaattttt 199  Q
    ||||| |||||| | ||||||||||||||||| ||  |||||||| ||||||| |||||||||||    
T  244583 cgtcaccaaaacctaagtttcttcttcttcatccacaaaagagggttgatttagggtcaattttt 244647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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