View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1878_low_18 (Length: 272)

Name: NF1878_low_18
Description: NF1878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1878_low_18
NF1878_low_18
[»] chr1 (36 HSPs)
chr1 (99-172)||(3717879-3717952)
chr1 (12-101)||(49660176-49660265)
chr1 (12-101)||(43560201-43560290)
chr1 (202-257)||(3717957-3718012)
chr1 (12-101)||(11037180-11037266)
chr1 (14-95)||(39712381-39712462)
chr1 (12-99)||(33070601-33070688)
chr1 (12-99)||(21433386-21433473)
chr1 (12-99)||(37516523-37516610)
chr1 (15-100)||(9566949-9567034)
chr1 (12-100)||(44519137-44519224)
chr1 (12-98)||(649768-649854)
chr1 (12-98)||(23645411-23645496)
chr1 (12-97)||(9897547-9897632)
chr1 (14-99)||(11947794-11947879)
chr1 (12-101)||(30735279-30735367)
chr1 (12-99)||(9987950-9988037)
chr1 (12-99)||(15083036-15083122)
chr1 (12-98)||(19947728-19947812)
chr1 (31-102)||(34254355-34254426)
chr1 (12-99)||(37619543-37619629)
chr1 (32-99)||(48983673-48983740)
chr1 (12-99)||(49446783-49446870)
chr1 (12-99)||(52362481-52362567)
chr1 (12-98)||(37685331-37685416)
chr1 (12-98)||(37700102-37700187)
chr1 (12-102)||(47214204-47214293)
chr1 (12-97)||(19055745-19055829)
chr1 (12-69)||(46758398-46758455)
chr1 (65-98)||(50239191-50239224)
chr1 (31-99)||(4213071-4213139)
chr1 (31-99)||(10890050-10890118)
chr1 (31-99)||(15705066-15705134)
chr1 (12-76)||(48325989-48326053)
chr1 (31-99)||(48858822-48858890)
chr1 (12-60)||(50239150-50239198)
[»] chr4 (20 HSPs)
chr4 (12-99)||(24509373-24509460)
chr4 (12-99)||(21025600-21025687)
chr4 (12-103)||(53796657-53796741)
chr4 (18-97)||(26909375-26909454)
chr4 (12-99)||(5249867-5249954)
chr4 (32-97)||(2401611-2401676)
chr4 (31-100)||(10994157-10994225)
chr4 (12-99)||(55609150-55609237)
chr4 (12-99)||(42959270-42959357)
chr4 (12-99)||(43174983-43175069)
chr4 (32-99)||(51255745-51255812)
chr4 (12-98)||(14443198-14443284)
chr4 (32-98)||(18568821-18568886)
chr4 (12-98)||(36123445-36123531)
chr4 (31-99)||(11012140-11012207)
chr4 (12-100)||(36111381-36111469)
chr4 (14-98)||(46634100-46634183)
chr4 (12-100)||(50721730-50721818)
chr4 (31-99)||(54669587-54669655)
chr4 (32-100)||(55268007-55268074)
[»] chr3 (24 HSPs)
chr3 (12-98)||(536261-536347)
chr3 (12-100)||(48152271-48152359)
chr3 (12-95)||(29030792-29030875)
chr3 (12-100)||(41670567-41670655)
chr3 (12-99)||(21196123-21196209)
chr3 (12-99)||(48405409-48405496)
chr3 (12-94)||(45693750-45693832)
chr3 (12-101)||(10811132-10811221)
chr3 (12-99)||(37894227-37894315)
chr3 (12-99)||(32362932-32363019)
chr3 (12-99)||(50559197-50559284)
chr3 (12-102)||(38926624-38926713)
chr3 (12-99)||(16479631-16479718)
chr3 (14-98)||(16969554-16969637)
chr3 (12-99)||(288724-288811)
chr3 (65-100)||(23770769-23770804)
chr3 (12-98)||(5244229-5244314)
chr3 (12-98)||(26014812-26014897)
chr3 (32-98)||(29573361-29573427)
chr3 (65-99)||(37035552-37035586)
chr3 (12-98)||(37302546-37302631)
chr3 (12-58)||(55361219-55361265)
chr3 (12-101)||(19150305-19150393)
chr3 (31-99)||(49196695-49196762)
[»] chr7 (23 HSPs)
chr7 (12-99)||(36703857-36703944)
chr7 (12-99)||(17945067-17945153)
chr7 (12-99)||(35600670-35600757)
chr7 (18-99)||(45815247-45815328)
chr7 (12-90)||(33776367-33776445)
chr7 (12-98)||(38656535-38656621)
chr7 (32-102)||(37899319-37899389)
chr7 (16-99)||(47448825-47448908)
chr7 (14-96)||(35098691-35098772)
chr7 (32-102)||(37899218-37899288)
chr7 (12-98)||(41430137-41430223)
chr7 (12-101)||(13152590-13152678)
chr7 (32-99)||(12007191-12007258)
chr7 (12-71)||(13906443-13906502)
chr7 (12-99)||(39497287-39497374)
chr7 (14-101)||(46260079-46260166)
chr7 (12-98)||(30941386-30941471)
chr7 (12-101)||(2008843-2008932)
chr7 (31-100)||(19426578-19426646)
chr7 (64-97)||(22816951-22816984)
chr7 (12-101)||(41018660-41018749)
chr7 (12-101)||(42584799-42584888)
chr7 (12-60)||(21103050-21103098)
[»] chr6 (13 HSPs)
chr6 (12-98)||(10335550-10335636)
chr6 (12-95)||(10826504-10826588)
chr6 (12-99)||(25127818-25127905)
chr6 (12-98)||(6531169-6531254)
chr6 (12-99)||(17551364-17551451)
chr6 (31-102)||(20822872-20822943)
chr6 (12-99)||(32459502-32459589)
chr6 (12-98)||(1376364-1376450)
chr6 (12-98)||(1384112-1384198)
chr6 (12-98)||(25811824-25811909)
chr6 (12-101)||(552790-552878)
chr6 (31-100)||(9954546-9954614)
chr6 (12-100)||(32046696-32046783)
[»] chr2 (20 HSPs)
chr2 (12-98)||(10833631-10833717)
chr2 (12-99)||(13711352-13711439)
chr2 (17-98)||(9048392-9048473)
chr2 (21-98)||(8293229-8293306)
chr2 (18-99)||(40443046-40443127)
chr2 (31-103)||(2308327-2308398)
chr2 (12-100)||(9207588-9207675)
chr2 (12-100)||(18254195-18254282)
chr2 (12-100)||(41042252-41042339)
chr2 (12-99)||(24766151-24766238)
chr2 (37-99)||(31296856-31296917)
chr2 (32-98)||(34134776-34134842)
chr2 (31-101)||(43057061-43057131)
chr2 (31-95)||(2563707-2563771)
chr2 (12-60)||(9990728-9990776)
chr2 (12-100)||(14328379-14328467)
chr2 (12-60)||(32975095-32975143)
chr2 (31-99)||(36132973-36133040)
chr2 (12-100)||(39449103-39449190)
chr2 (31-99)||(40504223-40504291)
[»] scaffold0416 (1 HSPs)
scaffold0416 (12-95)||(6861-6943)
[»] chr8 (23 HSPs)
chr8 (12-91)||(39692302-39692381)
chr8 (15-99)||(2621784-2621868)
chr8 (12-95)||(33279534-33279617)
chr8 (12-99)||(43285948-43286035)
chr8 (32-102)||(3946236-3946306)
chr8 (12-98)||(25830231-25830317)
chr8 (31-99)||(4658267-4658335)
chr8 (15-98)||(7598708-7598791)
chr8 (31-98)||(25987791-25987858)
chr8 (12-99)||(33100454-33100541)
chr8 (12-99)||(35067159-35067246)
chr8 (12-98)||(12284255-12284341)
chr8 (12-98)||(34718115-34718200)
chr8 (12-98)||(42786645-42786731)
chr8 (12-101)||(9549185-9549273)
chr8 (12-60)||(7271889-7271937)
chr8 (12-60)||(7777165-7777213)
chr8 (14-98)||(7795292-7795376)
chr8 (12-60)||(10692476-10692524)
chr8 (18-78)||(23793082-23793141)
chr8 (12-60)||(34873874-34873922)
chr8 (12-60)||(42768243-42768291)
chr8 (14-98)||(43397781-43397864)
[»] chr5 (11 HSPs)
chr5 (14-98)||(9742367-9742451)
chr5 (12-98)||(22098255-22098341)
chr5 (32-101)||(18695315-18695384)
chr5 (32-100)||(8920076-8920144)
chr5 (12-100)||(30640788-30640875)
chr5 (12-99)||(1274357-1274443)
chr5 (12-99)||(35075561-35075648)
chr5 (32-98)||(21922150-21922216)
chr5 (12-98)||(28306118-28306203)
chr5 (12-98)||(35634822-35634907)
chr5 (31-99)||(13089786-13089854)
[»] scaffold0085 (1 HSPs)
scaffold0085 (14-95)||(22841-22922)
[»] scaffold0432 (1 HSPs)
scaffold0432 (12-100)||(6505-6593)
[»] scaffold0532 (1 HSPs)
scaffold0532 (12-98)||(10964-11049)
[»] scaffold0034 (1 HSPs)
scaffold0034 (31-99)||(101910-101978)
[»] scaffold0006 (1 HSPs)
scaffold0006 (64-100)||(73081-73117)


Alignment Details
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 3717879 - 3717952
Alignment:
Q  99 taatacaatcgcttaatcatgaagatgtgttcaagcaaaatcaacgcaattcatatcaatatttagtcatctat 172  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  3717879 taatacaatcgcttaatcatgaagatgtgttcaaacaaagtcaacgcaattcatatcaatatttagtcatctat 3717952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 49660265 - 49660176
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaa 101  Q
    |||||||||||||||||  ||||| ||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  49660265 agagagaaagtaaaaaaataatgtgagtatgagagataaagttgtcacataggttgtcacaaaatggttgttaaaatatcatttctctaa 49660176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 43560290 - 43560201
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaa 101  Q
    |||||||||||||||||  ||||| ||||| ||||||||||||||||| ||| ||||||||||||||| || ||||||||||||||||||    
T  43560290 agagagaaagtaaaaaattaatgtgagtatgagagataaagttgtcacctagattgtcacaaaatggttgtgaaaatatcatttctctaa 43560201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 3717957 - 3718012
Alignment:
Q  202 caacgagccctattattgacaacacattaagtcaatctttaacaatgagataatac 257  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3717957 caacgagccctattattgacaacacattaagtcaacctttaacaatgagataatac 3718012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 11037266 - 11037180
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaa 101  Q
    ||||||||| |||||||  ||||||||||| |||||||||||| |||||  ||||||||||||||||| |||||||||||||||||||||    
T  11037266 agagagaaattaaaaaat-aatgtaagtatgagagataaagttatcaca--ggttgtcacaaaatggttgtcaaaatatcatttctctaa 11037180  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 39712462 - 39712381
Alignment:
Q  14 agagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcattt 95  Q
    |||||||||||||||  ||||| | ||| || |||||||||||||||||| || |||||||||||| |||||||||||||||    
T  39712462 agagaaagtaaaaaaataatgtgaatatgagcgataaagttgtcacatagattatcacaaaatggttgtcaaaatatcattt 39712381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 33070688 - 33070601
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    |||||||||||||||||   |||| ||||| | | ||||| |||||||||| ||||||| |||||||| |||||||||||||||||||    
T  33070688 agagagaaagtaaaaaaattatgtgagtatgaaaaataaaattgtcacataagttgtcataaaatggttgtcaaaatatcatttctct 33070601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 21433386 - 21433473
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||||||| ||||||   ||||| ||||||||||| |||||||||||| | ||||| |||||||||| ||  |||||||||||||||    
T  21433386 agagagaaaataaaaacataatgtgagtataagagagaaagttgtcacaaaagttgttacaaaatggttgtacaaatatcatttctct 21433473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 37516610 - 37516523
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||||||||||| |||  ||||| ||||| ||||||||| |||||| |||  |||| |||||||| | |||||||||||||||||||    
T  37516610 agagagaaagtaacaaaataatgtgagtatgagagataaaattgtcatataaattgttacaaaatgattgtcaaaatatcatttctct 37516523  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 9566949 - 9567034
Alignment:
Q  15 gagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctcta 100  Q
    |||||||||||||   ||||| ||||| ||||| |||||||||||| | ||||||| |||||||| ||  ||||||||||||||||    
T  9566949 gagaaagtaaaaacataatgtgagtatgagagagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctcta 9567034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 44519137 - 44519224
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctcta 100  Q
    ||||||||||||||||   ||||||||||||||||| |||||||||| | | ||||||| |||||||| ||  | ||||||||||||||    
T  44519137 agagagaaagtaaaaagataatgtaagtataagagagaaagttgtcataaaagttgtca-aaaatggttgttcatatatcatttctcta 44519224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 649854 - 649768
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    ||||||||||||||||   ||||| ||||| ||||| |||||||||||| | ||||| | |||||||| ||  ||||||||||||||    
T  649854 agagagaaagtaaaaagataatgtgagtatgagagagaaagttgtcacaaaagttgtaaaaaaatggttgttcaaatatcatttctc 649768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 23645496 - 23645411
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    ||||||||||||||||   ||||| ||||| |||||||||||||||| | | ||||| | |||||||| ||| ||||||||||||||    
T  23645496 agagagaaagtaaaaagataatgtgagtatgagagataaagttgtcaaaaaagttgt-aaaaaatggttgtccaaatatcatttctc 23645411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 9897547 - 9897632
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttct 97  Q
    ||||||||||||||||   ||||| ||||| | |||||||||||||||| | ||||||| ||||||||  |  |||||||||||||    
T  9897547 agagagaaagtaaaaacataatgtgagtattaaagataaagttgtcacaaaagttgtcaaaaaatggttctacaaatatcatttct 9897632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 11947879 - 11947794
Alignment:
Q  14 agagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    |||||||||||| |   ||||| ||||| ||||| |||||||||||| | ||||||| |||||||| ||  |||||||||||||||    
T  11947879 agagaaagtaaatatataatgtcagtatgagagagaaagttgtcacaaaagttgtcataaaatggttgtacaaatatcatttctct 11947794  T

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Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 30735279 - 30735367
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaa 101  Q
    |||||||||||||||||  ||||| ||||| ||||| |||||||||||| | ||||| | |||||||| ||  ||||||||||| |||||    
T  30735279 agagagaaagtaaaaaaataatgtgagtatgagagaaaaagttgtcacaaaagttgt-aaaaaatggttgttcaaatatcatttatctaa 30735367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 9988037 - 9987950
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||||||||||||||   ||||| ||||| | ||| |||||||||||| | ||||||| ||| |||| ||  |||||||||||||||    
T  9988037 agagagaaagtaaaaatataatgtgagtatgaaagagaaagttgtcacaaaagttgtcaaaaattggttgttcaaatatcatttctct 9987950  T

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Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 15083036 - 15083122
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||||||||||||||   || |||||||| ||||| ||| |||||||| | ||||||| |||||||| ||  |||||||||||||||    
T  15083036 agagagaaagtaaaaagataaagtaagtatgagagagaaaattgtcacaaaagttgtca-aaaatggttgttcaaatatcatttctct 15083122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 19947728 - 19947812
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    |||||||||||||||    ||||||||||  ||||| |||||||||||| | ||||||| |||||||| ||  ||||||||||||||    
T  19947728 agagagaaagtaaaagcataatgtaagta--agagagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctc 19947812  T

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Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 34254355 - 34254426
Alignment:
Q  31 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaat 102  Q
    ||||| ||||| |||||||||||||||||| | ||||||| ||||||   ||  ||||||||||||||||||    
T  34254355 aatgtgagtatgagagataaagttgtcacagaagttgtcataaaatgaatgttcaaatatcatttctctaat 34254426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 37619629 - 37619543
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||||||| ||||||   ||||| ||||| ||||| |||||||||||| | ||| ||| |||||||| ||| |||||||||||||||    
T  37619629 agagagaaattaaaaagataatgtgagtatgagagagaaagttgtcacaaaagttatca-aaaatggttgtccaaatatcatttctct 37619543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 48983673 - 48983740
Alignment:
Q  32 atgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    |||| ||||| ||||| |||||||||||| | ||||||| |||||||| ||  |||||||||||||||    
T  48983673 atgtgagtatgagagagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctct 48983740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 49446783 - 49446870
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||||||||||||||   ||||||||||| ||||| |||||||||||| |  |||  ||||||||||  |  |||||||||||||||    
T  49446783 agagagaaagtaaaaatataatgtaagtatgagagagaaagttgtcacaaaaattggtacaaaatggttttacaaatatcatttctct 49446870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 52362567 - 52362481
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||| |||||||||||  ||||| ||||| ||||| |||||||||||| | ||||||| |||||||  ||  |||||||||||||||    
T  52362567 agagataaagtaaaaaat-aatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctct 52362481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 37685416 - 37685331
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    ||||||||||||||||   ||||| ||||| ||||| |||||||||||| | ||||| | |||||||| ||  ||||||||||||||    
T  37685416 agagagaaagtaaaaagataatgtgagtatgagagagaaagttgtcacaaaagttgt-aaaaaatggttgttcaaatatcatttctc 37685331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 37700102 - 37700187
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    ||||||||||||||||   ||||| ||||| ||||| |||||||||||| | ||||| | |||||||| ||  ||||||||||||||    
T  37700102 agagagaaagtaaaaagataatgtgagtatgagagagaaagttgtcacaaaagttgt-aaaaaatggttgttcaaatatcatttctc 37700187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 47214293 - 47214204
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaat 102  Q
    ||||| |||||||||||  ||||| ||||| ||||| |||||||||||| | ||||||| ||||| |  ||  ||||||||||||||||||    
T  47214293 agagataaagtaaaaaat-aatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatagatgttcaaatatcatttctctaat 47214204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 19055745 - 19055829
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttct 97  Q
    ||||||||||||||||   ||||| ||||||||||| |||||||||| | | ||||||| ||||||||  |  |||||||||||||    
T  19055745 agagagaaagtaaaaaggtaatgtgagtataagagagaaagttgtcataaaagttgtca-aaaatggttatttaaatatcatttct 19055829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 46758455 - 46758398
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtc 69  Q
    |||||||||||||||||  ||| | ||||| ||||||||| ||||||||||| |||||    
T  46758455 agagagaaagtaaaaaaataatatgagtatgagagataaaattgtcacatagattgtc 46758398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 98
Target Start/End: Original strand, 50239191 - 50239224
Alignment:
Q  65 ttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    ||||||||||||||| ||||||||||||||||||    
T  50239191 ttgtcacaaaatggttgtcaaaatatcatttctc 50239224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 4213139 - 4213071
Alignment:
Q  31 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||| ||||| ||||| |||||||||||| | ||| ||| |||||||| ||  |||||||||||||||    
T  4213139 aatgtgagtatgagagagaaagttgtcacaaaagttatcaaaaaatggttgttcaaatatcatttctct 4213071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 10890050 - 10890118
Alignment:
Q  31 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||| ||||| ||||| |||||||||||| | ||||||| |||||||  ||  |||||||||||||||    
T  10890050 aatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctct 10890118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 15705066 - 15705134
Alignment:
Q  31 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||| ||||| ||||| |||||||||||| | ||||||| |||||||  ||  |||||||||||||||    
T  15705066 aatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctct 15705134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 48326053 - 48325989
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaat 76  Q
    ||||| |||||||||||  ||||||||||| ||||| ||||||||  || | |||||||||||||    
T  48326053 agagataaagtaaaaaaataatgtaagtatgagagagaaagttgttgcaaaagttgtcacaaaat 48325989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 48858890 - 48858822
Alignment:
Q  31 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||| ||||| ||||| |||||||||||| | ||||||| ||| |||| ||  |||||||||||||||    
T  48858890 aatgtgagtatgagagagaaagttgtcacaaaagttgtcaaaaagtggttgttcaaatatcatttctct 48858822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 50239150 - 50239198
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcaca 60  Q
    |||||||||||||||||  ||||| ||||| ||||||||| ||||||||    
T  50239150 agagagaaagtaaaaaattaatgtgagtatgagagataaaattgtcaca 50239198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 24509373 - 24509460
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    |||||||||||||||||  ||||| ||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  24509373 agagagaaagtaaaaaaataatgtgagtatgagagataaagttgtcacatagattgtcacaaaatggttgtcaaaatatcatttctct 24509460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 21025687 - 21025600
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    |||||||||||||||||  ||||| ||||  ||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||    
T  21025687 agagagaaagtaaaaaaataatgtgagtaagagagataaagttgtcacataaattgtcacaaaatggttgtcaaaatatcatttctct 21025600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 53796741 - 53796657
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaata 103  Q
    |||||||||||||||||  ||||| |||||||||||||||||||||||||| |||||       |||| |||||||||||||||||| ||||    
T  53796741 agagagaaagtaaaaaaataatgtgagtataagagataaagttgtcacataagttgt-------tggttgtcaaaatatcatttctcaaata 53796657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 26909454 - 26909375
Alignment:
Q  18 aaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttct 97  Q
    |||||||||||  ||||| ||||| |||||||||||| |||||||| |||||||||||| || |  ||||||||||||||    
T  26909454 aaagtaaaaaaataatgtgagtatgagagataaagttctcacatagattgtcacaaaatagttgataaaatatcatttct 26909375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 5249954 - 5249867
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||||||||||||||   ||||| ||||| ||||| |||||||||||| | ||||||| |||||||| |   |||||||||||||||    
T  5249954 agagagaaagtaaaaacataatgtgagtatgagagagaaagttgtcacaaatgttgtcataaaatggttgcacaaatatcatttctct 5249867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 2401676 - 2401611
Alignment:
Q  32 atgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttct 97  Q
    |||| ||||| |||||||||||||||||| | |||||||||||||||  ||  |||||||||||||    
T  2401676 atgtgagtatgagagataaagttgtcacaaaagttgtcacaaaatggatgttcaaatatcatttct 2401611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 10994157 - 10994225
Alignment:
Q  31 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctcta 100  Q
    ||||| ||||| |||||||||||||||| | || ||||||||||||||| ||  ||||||||||||||||    
T  10994157 aatgtgagtatgagagataaagttgtcaaa-agattgtcacaaaatggttgtacaaatatcatttctcta 10994225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 55609150 - 55609237
Alignment:
Q  12 agagagaaagtaaaaaacg-aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||||||| ||||||| | ||||| ||||| ||||| |||||||||||| | ||||| |||||||||| ||  |||||||||||||||    
T  55609150 agagagaaaataaaaaatgtaatgtgagtatgagagagaaagttgtcacaaaagttgt-acaaaatggttgtacaaatatcatttctct 55609237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 42959357 - 42959270
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||| |||||||||||  ||||| ||||||||||||||||||||  || | |||| ||| ||||||  ||  |||||||||||||||    
T  42959357 agagataaagtaaaaaaataatgtgagtataagagataaagttgttgcaaaagttgccactaaatggatgttcaaatatcatttctct 42959270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 43175069 - 43174983
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    |||||||||||||||||  ||||| ||||| ||||| |||||| ||||| | ||||| | |||||||| ||  |||||||||||||||    
T  43175069 agagagaaagtaaaaaaataatgtgagtatgagagagaaagttatcacaaaagttgt-aaaaaatggttgttcaaatatcatttctct 43174983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 51255812 - 51255745
Alignment:
Q  32 atgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    |||| ||||| ||||| |||||||||||| | ||||||| |||||||| ||  |||||||||||||||    
T  51255812 atgtgagtatgagagagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctct 51255745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 14443284 - 14443198
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    ||||||||||||||| |  ||| ||||||| ||||| ||| |||||||| | ||||||| |||||| | ||  ||||||||||||||    
T  14443284 agagagaaagtaaaataataatataagtatgagagagaaaattgtcacaaaagttgtcaaaaaatgattgttcaaatatcatttctc 14443198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 18568821 - 18568886
Alignment:
Q  32 atgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    |||| ||||||||||| ||||||||| || | |||||||||||||||| ||  ||||||||||||||    
T  18568821 atgtgagtataagagaaaaagttgtc-caaaagttgtcacaaaatggttgtataaatatcatttctc 18568886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 36123445 - 36123531
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    ||||||||||||||||   ||||||||||| ||||| |||||||||| | | ||||| | |||||| | ||  ||||||||||||||    
T  36123445 agagagaaagtaaaaatataatgtaagtatgagagagaaagttgtcataaaagttgttataaaatgattgtacaaatatcatttctc 36123531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 11012207 - 11012140
Alignment:
Q  31 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||||||||| |||||||||||||| | | | ||||||| |||||||| ||  |||||||||||||||    
T  11012207 aatgtaagtatgagagataaagttgtta-aaaagttgtcataaaatggttgtacaaatatcatttctct 11012140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 36111381 - 36111469
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctcta 100  Q
    ||||| |||||||||||  ||||| ||||| ||||||||||||||  || | ||||| || ||||||  ||  ||||||||||||||||    
T  36111381 agagataaagtaaaaaagtaatgtgagtatgagagataaagttgttgcaaaagttgttactaaatggatgttcaaatatcatttctcta 36111469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 46634183 - 46634100
Alignment:
Q  14 agagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    ||||||||||||||   ||||| ||||| |||||||||||||||||| | ||||| | |||||| | ||  ||||||||||||||    
T  46634183 agagaaagtaaaaagataatgtgagtatgagagataaagttgtcacaaaagttgt-aaaaaatgattgttcaaatatcatttctc 46634100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 50721730 - 50721818
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctcta 100  Q
    ||||||||||||||||   ||||| ||||| | ||| |||||| ||||| | ||||||| ||| |||| ||  ||||||||||||||||    
T  50721730 agagagaaagtaaaaatataatgtgagtatgaaagagaaagttatcacaaaagttgtcaaaaattggttgttcaaatatcatttctcta 50721818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 54669587 - 54669655
Alignment:
Q  31 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||||||||| | |||||||||||||| | | |||||||| ||||||  ||  |||||||||||||||    
T  54669587 aatgtaagtatgaaagataaagttgtcataaaagttgtcaccaaatggatgttgaaatatcatttctct 54669655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 55268007 - 55268074
Alignment:
Q  32 atgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctcta 100  Q
    |||| ||||| |||||||||||||| ||| | ||||||||||| |||| ||  ||||||||||||||||    
T  55268007 atgtgagtatgagagataaagttgt-acaaaagttgtcacaaattggttgtacaaatatcatttctcta 55268074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 536261 - 536347
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    |||||||||||||||||  ||||| ||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  536261 agagagaaagtaaaaaaataatgtgagtgtgagagataaagttgtcacataggttgtcacaaaatggttgtcaaaatatcatttctc 536347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 48152271 - 48152359
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctcta 100  Q
    ||||||||| |||||||  ||||| ||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  48152271 agagagaaaataaaaaaataatgtgagtatgagagataaagttgtcacatagattgtcacaaaatggttgtcaaaatatcatttctcta 48152359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 29030792 - 29030875
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcattt 95  Q
    |||||||||||||||||  ||||||||||| ||||||||||||||||| ||||||||||||||||| | |||||||||||||||    
T  29030792 agagagaaagtaaaaaattaatgtaagtatgagagataaagttgtcacctaggttgtcacaaaatgattgtcaaaatatcattt 29030875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 41670567 - 41670655
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctcta 100  Q
    ||||||||| |||||||  ||||| ||||| ||||||||||||||||| ||||||||||||||||||| ||||  ||||||||||||||    
T  41670567 agagagaaaataaaaaattaatgtgagtatgagagataaagttgtcacctaggttgtcacaaaatggttgtcatgatatcatttctcta 41670655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 21196209 - 21196123
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||| |||||||||||  ||||||||||| ||||| |||||||||||| | |||||||||||||||  ||  |||||||||||||||    
T  21196209 agagataaagtaaaaaat-aatgtaagtatgagagagaaagttgtcacagaagttgtcacaaaatggatgttcaaatatcatttctct 21196123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 48405496 - 48405409
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||||||||||||||   ||||| ||||| ||||| |||||||| ||| | |||||||||||||||| ||  |||||||||||||||    
T  48405496 agagagaaagtaaaaacataatgtgagtatgagagagaaagttgttacaaaagttgtcacaaaatggttgtacaaatatcatttctct 48405409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 45693832 - 45693750
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatt 94  Q
    ||||||||| |||||||  ||||| | ||| ||||||||||||||||| ||  ||||||||||||||| ||||| ||||||||    
T  45693832 agagagaaaataaaaaattaatgtgactatgagagataaagttgtcacctaaattgtcacaaaatggttgtcaagatatcatt 45693750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 10811221 - 10811132
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaa 101  Q
    |||||||| |||||||   ||||| ||||| ||||| |||||||||||| | ||||||| |||||||| ||  |||||||||||||||||    
T  10811221 agagagaaggtaaaaacacaatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatggttgttcaaatatcatttctctaa 10811132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 37894227 - 37894315
Alignment:
Q  12 agagagaaagtaaaaaacg-aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||||||||||||||| | ||||| ||||| ||||| |||||||||||| | ||||| | |||||||| ||  |||||||||||||||    
T  37894227 agagagaaagtaaaaaatgtaatgtgagtatgagagagaaagttgtcacaaaagttgttagaaaatggttgtacaaatatcatttctct 37894315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 32363019 - 32362932
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||||||||||||| |  |||||  |||| |||||||||||||||| | | ||||||| |||||||| ||  |||||||||||||||    
T  32363019 agagagaaagtaaaagaacaatgtgtgtatgagagataaagttgtcataaaagttgtcaaaaaatggttgttcaaatatcatttctct 32362932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 50559197 - 50559284
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||||||||||||||   ||||||||||| ||||| ||| |||||||| | ||||||| ||||| || ||  |||||||||||||||    
T  50559197 agagagaaagtaaaaacataatgtaagtatgagagagaaaattgtcacaaaagttgtcaaaaaatagttgtacaaatatcatttctct 50559284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 38926713 - 38926624
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaat 102  Q
    ||||||||||||||||   ||||| ||||| ||||| |||||||||||| | ||||| | |||||||| ||  ||||||||||||||||||    
T  38926713 agagagaaagtaaaaagataatgtgagtatgagagagaaagttgtcacaaacgttgt-aaaaaatggttgttcaaatatcatttctctaat 38926624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 16479718 - 16479631
Alignment:
Q  12 agagagaaagtaaaaaacg-aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||||||| ||||||| | ||||| ||||| ||||| |||||||||||| | ||||| |||||||||| ||  |||||||||||||||    
T  16479718 agagagaaaataaaaaatgtaatgtgagtatgagagagaaagttgtcacaaaagttgt-acaaaatggttgtacaaatatcatttctct 16479631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 16969554 - 16969637
Alignment:
Q  14 agagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    ||||||||||||||   ||||| ||||| ||||| |||||||||| | | ||||||| |||||||| || |||||||||||||||    
T  16969554 agagaaagtaaaaagataatgtgagtatgagagagaaagttgtcaaaaaagttgtca-aaaatggttgttaaaatatcatttctc 16969637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 288811 - 288724
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    |||||||||||||||||  ||||| ||||| ||||| |||||||||||| | ||| | | ||||| || ||  |||||||||||||||    
T  288811 agagagaaagtaaaaaaataatgtgagtatgagagagaaagttgtcacaaaagttataaaaaaattgttgttcaaatatcatttctct 288724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 100
Target Start/End: Original strand, 23770769 - 23770804
Alignment:
Q  65 ttgtcacaaaatggtagtcaaaatatcatttctcta 100  Q
    ||||||||||||||| ||||||||||||||||||||    
T  23770769 ttgtcacaaaatggttgtcaaaatatcatttctcta 23770804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 5244314 - 5244229
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    |||||||||||||||||  ||||| ||||| ||||| |||||||||||| | ||||| | || ||||| ||  ||||||||||||||    
T  5244314 agagagaaagtaaaaaaataatgtgagtatgagagagaaagttgtcacaaaagttgt-aaaatatggttgttcaaatatcatttctc 5244229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 26014897 - 26014812
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    ||||||||||||||||   ||||| ||||| ||||| |||||||||||| | ||||| | |||||||| ||  ||||||||||||||    
T  26014897 agagagaaagtaaaaagataatgtgagtatgagagagaaagttgtcacaaaagttgt-aaaaaatggttgttcaaatatcatttctc 26014812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 29573361 - 29573427
Alignment:
Q  32 atgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    |||| ||||| ||||| |||||||||||| | ||||| |||||||||| ||  ||||||||||||||    
T  29573361 atgtgagtatgagagagaaagttgtcacaaaagttgttacaaaatggttgtacaaatatcatttctc 29573427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 99
Target Start/End: Original strand, 37035552 - 37035586
Alignment:
Q  65 ttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||||||||||||| |||||||||||||||||||    
T  37035552 ttgtcacaaaatggttgtcaaaatatcatttctct 37035586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 37302631 - 37302546
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    ||||||||||||||||   ||||| | ||| ||||| |||||||||||| | ||||| | |||||||| || |||||||||||||||    
T  37302631 agagagaaagtaaaaaggtaatgtgaatatgagagagaaagttgtcacaaaagttgt-aaaaaatggttgttaaaatatcatttctc 37302546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 55361219 - 55361265
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtca 58  Q
    |||||||||||||||||  ||||| ||||||||||| ||||||||||    
T  55361219 agagagaaagtaaaaaaataatgtgagtataagagagaaagttgtca 55361265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 19150305 - 19150393
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaa 101  Q
    ||||||||||||||| |  ||||||| ||| ||||| |||||||||||| | ||||| | |||||| | ||  |||||||||||||||||    
T  19150305 agagagaaagtaaaatat-aatgtaaatatgagagagaaagttgtcacaaaagttgttaaaaaatgattgtacaaatatcatttctctaa 19150393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 49196762 - 49196695
Alignment:
Q  31 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||| ||||| ||||| ||| |||||||| || ||||||||||||||| ||  |||||||||||||||    
T  49196762 aatgtgagtatgagagagaaaattgtcacaaag-ttgtcacaaaatggttgtacaaatatcatttctct 49196695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 36703857 - 36703944
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    |||||||||||||||||  ||||| ||||| ||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||    
T  36703857 agagagaaagtaaaaaaataatgtgagtatgagagataaaattgtcacatatgttgtcacaaaatggttgtcaaaatatcatttctct 36703944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 17945153 - 17945067
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||||||||||||| |  ||||| ||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  17945153 agagagaaagtaaaagaataatgtgagtatgagagataaagttgtcacatag-ttgtcacaaaatggttgtcaaaatatcatttctct 17945067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 35600757 - 35600670
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||| |||||||||||  ||||| ||||| | ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  35600757 agagaaaaagtaaaaaaataatgtgagtatgaaagataaaattgtcacataggttgtcacaaaatggttgtcaaaatatcatttctct 35600670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 45815247 - 45815328
Alignment:
Q  18 aaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    |||||||||||  ||||| ||||| ||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||    
T  45815247 aaagtaaaaaaataatgtgagtatgagagataaagttgtcacatatattgtcacaaaatggttgtcaaaatatcatttctct 45815328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 33776445 - 33776367
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatat 90  Q
    ||||||||||| |||||  ||||| ||||| |||||||||||||||| |||||||||||||||||||| ||||||||||    
T  33776445 agagagaaagttaaaaaataatgtgagtatgagagataaagttgtcatataggttgtcacaaaatggttgtcaaaatat 33776367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 38656621 - 38656535
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    |||||||||||||||||  ||| | | ||| |||||||||||||||| ||| ||| |||||||||||| ||||||||||||||||||    
T  38656621 agagagaaagtaaaaaaataatatgaatatgagagataaagttgtcaaataagttctcacaaaatggttgtcaaaatatcatttctc 38656535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 37899389 - 37899319
Alignment:
Q  32 atgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaat 102  Q
    |||| ||||| |||||||||||||||||| | |||||||||||||||  ||  ||||||||||||||||||    
T  37899389 atgtgagtatgagagataaagttgtcacaaaagttgtcacaaaatggatgttcaaatatcatttctctaat 37899319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 47448908 - 47448825
Alignment:
Q  16 agaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||||||||||   ||||| ||||| ||||| |||||||||||| | ||||||| |||||||| ||  |||||||||||||||    
T  47448908 agaaagtaaaaacacaatgtgagtatgagagagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctct 47448825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 35098691 - 35098772
Alignment:
Q  14 agagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttc 96  Q
    ||||||||||||||  |||||| ||||| | ||| |||||||||||||| ||||||| |||||||| ||  ||||||||||||    
T  35098691 agagaaagtaaaaatagaatgtgagtatgaaagagaaagttgtcacata-gttgtcaaaaaatggttgttcaaatatcatttc 35098772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 37899218 - 37899288
Alignment:
Q  32 atgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaat 102  Q
    |||||||||| ||||| |||||||||||| |  ||||||||||||||  ||  ||||||||||||||||||    
T  37899218 atgtaagtatgagagagaaagttgtcacaaaaattgtcacaaaatggatgttcaaatatcatttctctaat 37899288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 41430137 - 41430223
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    ||||| ||||||||||   ||||| ||||||||||| |||||||||||| | ||||| | |||||||| ||| | ||||||||||||    
T  41430137 agagataaagtaaaaatataatgtgagtataagagagaaagttgtcacaaaagttgttagaaaatggttgtccatatatcatttctc 41430223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 13152678 - 13152590
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaa 101  Q
    |||||||||||||||    ||||| ||||| ||||| |||||||||||| | ||||||| |||||||| ||  |||||||||||||||||    
T  13152678 agagagaaagtaaaaggataatgtgagtatgagagagaaagttgtcacaaaagttgtca-aaaatggttgttcaaatatcatttctctaa 13152590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 12007191 - 12007258
Alignment:
Q  32 atgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    |||| ||||| ||||| |||||||||||| | ||||||| |||||||| ||  |||||||||||||||    
T  12007191 atgtgagtatgagagagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctct 12007258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 13906443 - 13906502
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcac 71  Q
    ||||| |||||||||||  ||||||||||||||||| ||||||||  || ||||||||||    
T  13906443 agagataaagtaaaaaaataatgtaagtataagagagaaagttgttgcaaaggttgtcac 13906502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 39497287 - 39497374
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||||||||||||||   ||||| | ||||| | |||||||| ||||| ||||||| | |||||||| ||  |||||||||||||||    
T  39497287 agagagaaagtaaaaacgtaatgtgaatataaaacataaagttatcacaaaggttgttaaaaaatggttgtacaaatatcatttctct 39497374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 46260079 - 46260166
Alignment:
Q  14 agagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaa 101  Q
    ||||||||||||||   ||| ||| ||| |||||||||||||||||| | |||||   |||||||| ||  |||||||||||||||||    
T  46260079 agagaaagtaaaaatataatataaatatgagagataaagttgtcacaaaagttgttttaaaatggttgtataaatatcatttctctaa 46260166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 30941471 - 30941386
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    ||||||||||||||||   ||||| ||||| ||||| |||||||||||| | ||||| | |||||||| ||  ||||||||||||||    
T  30941471 agagagaaagtaaaaagataatgtgagtatgagagagaaagttgtcacaaaagttgt-aaaaaatggttgttcaaatatcatttctc 30941386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 2008843 - 2008932
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaa 101  Q
    |||||||||||| || |  |||||  |||| ||||| |||||||||||| | ||||||| ||| |||| ||  |||||||||||||||||    
T  2008843 agagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcacaaaagttgtcaaaaagtggttgttcaaatatcatttctctaa 2008932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 19426646 - 19426578
Alignment:
Q  31 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctcta 100  Q
    ||||| ||||| ||||| |||||||||| | || ||||||||||||||| ||  ||||||||||||||||    
T  19426646 aatgtgagtatgagagagaaagttgtcaaaaag-ttgtcacaaaatggttgtacaaatatcatttctcta 19426578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 97
Target Start/End: Complemental strand, 22816984 - 22816951
Alignment:
Q  64 gttgtcacaaaatggtagtcaaaatatcatttct 97  Q
    |||||||||||||||| |||||||||||||||||    
T  22816984 gttgtcacaaaatggttgtcaaaatatcatttct 22816951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 41018749 - 41018660
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaa 101  Q
    ||||||||||||||||   ||||| ||||| ||| | |||||||||||| | ||||||  ||||| || ||  |||||||||||||||||    
T  41018749 agagagaaagtaaaaatataatgtgagtatgagatagaaagttgtcacaaaagttgtccaaaaatagttgttcaaatatcatttctctaa 41018660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 42584888 - 42584799
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaa 101  Q
    ||||| ||||||||||   ||||| ||||| ||||| |||||||||||| | ||||| | |||||||| ||  | |||||||||||||||    
T  42584888 agagataaagtaaaaatataatgtgagtatgagagagaaagttgtcacaaaagttgttagaaaatggttgtacatatatcatttctctaa 42584799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 21103098 - 21103050
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcaca 60  Q
    ||||| |||||||||||  ||||||||||||||| | ||||||||||||    
T  21103098 agagataaagtaaaaaaataatgtaagtataagatagaaagttgtcaca 21103050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 10335636 - 10335550
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    |||||||||||||||||  ||||| ||||| |||||||||||||||||||| || ||||||||||||| ||||||||||||||||||    
T  10335636 agagagaaagtaaaaaaataatgtgagtatgagagataaagttgtcacataagtcgtcacaaaatggttgtcaaaatatcatttctc 10335550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 10826588 - 10826504
Alignment:
Q  12 agagagaaagtaaaaaacg-aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcattt 95  Q
    |||||||||||||||||   ||||| | ||||||| ||||| ||||||| || ||||||||||||||||  ||||||||||||||    
T  10826588 agagagaaagtaaaaaaattaatgtgaatataagaaataaaattgtcacttaagttgtcacaaaatggttatcaaaatatcattt 10826504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 25127818 - 25127905
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||||||||||||||   ||||| ||||| ||||| |||||| ||||| | ||||| |||||||||| ||  |||||||||||||||    
T  25127818 agagagaaagtaaaaacataatgtgagtatcagagagaaagttttcacaaaagttgttacaaaatggttgtacaaatatcatttctct 25127905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 6531169 - 6531254
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    ||||| |||||||||||  ||||| ||||| ||||| ||||||||| |||| |||||||||||||||  ||  ||||||||||||||    
T  6531169 agagataaagtaaaaaat-aatgtgagtatgagagagaaagttgtcccataagttgtcacaaaatggatgttcaaatatcatttctc 6531254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 17551364 - 17551451
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||| ||||||||||   ||||| ||||| ||||| |||||||| ||| | ||||||| |||||||| ||  |||||||||||||||    
T  17551364 agagataaagtaaaaacataatgtgagtatgagagagaaagttgttacaaaagttgtcaaaaaatggttgttcaaatatcatttctct 17551451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 20822872 - 20822943
Alignment:
Q  31 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaat 102  Q
    ||||| ||||| ||||| |||||||||||| | ||||||| |||||||  ||  ||||||||||||||||||    
T  20822872 aatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctctaat 20822943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 32459502 - 32459589
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||| |||||||||||  ||||| | ||| ||||| |||||||||||| | ||||||| |||||||  ||  |||||||||||||||    
T  32459502 agagataaagtaaaaaagtaatgtgaatatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctct 32459589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 1376450 - 1376364
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    ||||| ||||||||||   ||||| ||||||||||| |||||||||||| | ||||| | |||||||| ||  |||||| |||||||    
T  1376450 agagataaagtaaaaatataatgtgagtataagagagaaagttgtcacaaaagttgttagaaaatggttgtacaaatataatttctc 1376364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 1384198 - 1384112
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    ||||| ||||||||||   ||||| ||||||||||| |||||||||||| | ||||| | |||||||| ||  |||||| |||||||    
T  1384198 agagataaagtaaaaatataatgtgagtataagagagaaagttgtcacaaaagttgttagaaaatggttgtacaaatataatttctc 1384112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 25811824 - 25811909
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    ||||||||||||||||   ||||| ||||| ||||| |||||||||||| | ||||| | |||||||| ||  ||||||||||||||    
T  25811824 agagagaaagtaaaaagataatgtgagtatgagagagaaagttgtcacaaaagttgt-aaaaaatggttgttcaaatatcatttctc 25811909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 552878 - 552790
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaa 101  Q
    ||||||||||||||||   ||||| | ||| ||||| |||||||||||||| ||||| | |||||| | ||  |||||||||||||||||    
T  552878 agagagaaagtaaaaagataatgtgaatatgagagacaaagttgtcacataagttgt-aaaaaatgtttgttcaaatatcatttctctaa 552790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 9954614 - 9954546
Alignment:
Q  31 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctcta 100  Q
    ||||||||||| ||||| |||||||||| | || |||||||||| |||| ||  ||||||||||||||||    
T  9954614 aatgtaagtatgagagagaaagttgtcaaaaag-ttgtcacaaattggttgtacaaatatcatttctcta 9954546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 32046783 - 32046696
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctcta 100  Q
    ||||| |||||||||||  ||||| ||||| ||||| || ||||||||||| ||||| ||||||| |  ||  ||||||||||||||||    
T  32046783 agagataaagtaaaaaat-aatgtgagtatgagagagaaggttgtcacataagttgttacaaaattgatgttcaaatatcatttctcta 32046696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 10833631 - 10833717
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    |||||||||||||||||  ||||| ||||| ||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||    
T  10833631 agagagaaagtaaaaaaataatgtgagtatgagagataaaattgtcacatagattgtcacaaaatggttgtcaaaatatcatttctc 10833717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 13711352 - 13711439
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    |||||||||||||||||  ||||| | ||| ||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||    
T  13711352 agagagaaagtaaaaaaataatgtgaatatgagagataaagttgtcacgtaggttgtcacaaaatgggtgtcaaaatatcatttctct 13711439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 9048392 - 9048473
Alignment:
Q  17 gaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    ||||||||||||  ||||| | ||| |||||||||||||| |||||| || |||||||||||| ||||||||||||||||||    
T  9048392 gaaagtaaaaaaataatgtgaatatgagagataaagttgttacatagattatcacaaaatggttgtcaaaatatcatttctc 9048473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 8293306 - 8293229
Alignment:
Q  21 gtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    ||||||||  ||||| ||||||| | |||||||||| |||||  || ||||||||| || ||||||||||||||||||    
T  8293306 gtaaaaaaataatgtgagtataaaaaataaagttgttacataaattatcacaaaatagttgtcaaaatatcatttctc 8293229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 40443127 - 40443046
Alignment:
Q  18 aaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||||||||   ||||||||||||||||||||| ||||||||   ||||||| |||| ||| ||  |||||||||||||||    
T  40443127 aaagtaaaaacaaaatgtaagtataagagataaatttgtcacagcagttgtcataaaacggttgttcaaatatcatttctct 40443046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 2308327 - 2308398
Alignment:
Q  31 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaata 103  Q
    ||||| ||||| |||||||||||||||| | ||||||||| ||| |||| ||  |||||||||||||||||||    
T  2308327 aatgtgagtatgagagataaagttgtcaaa-aggttgtcaaaaattggttgtacaaatatcatttctctaata 2308398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 9207675 - 9207588
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctcta 100  Q
    |||||||||||||||||  ||||| ||||| ||||| |||||||||||| | ||||| | |||||| | ||  ||||||||||||||||    
T  9207675 agagagaaagtaaaaaaataatgtgagtatgagagagaaagttgtcacaaaagttgt-aaaaaatgattgttcaaatatcatttctcta 9207588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 18254195 - 18254282
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctcta 100  Q
    ||||||||||||||||   ||||| ||||| ||||| |||||||||||| | ||||| | |||||||| ||  ||||||||||||||||    
T  18254195 agagagaaagtaaaaagataatgtgagtatgagagagaaagttgtcacaaaagttgt-aaaaaatggttgttcaaatatcatttctcta 18254282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 41042339 - 41042252
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctcta 100  Q
    ||||||||||||||||   ||||| ||||| ||||| |||||||||||| | ||||| | |||||||| ||  ||||||||||||||||    
T  41042339 agagagaaagtaaaaagataatgtgagtatgagagaaaaagttgtcacaaaagttgtta-aaaatggttgttcaaatatcatttctcta 41042252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 24766238 - 24766151
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||||||||||||||   ||||| |||||  ||||||||||||||||| | ||| | | |||||||| ||  |||||||||||||||    
T  24766238 agagagaaagtaaaaatataatgtgagtatgcgagataaagttgtcacaaaagttattaaaaaatggttgtacaaatatcatttctct 24766151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 31296856 - 31296917
Alignment:
Q  37 agtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||| |||||||||||||||| | | |||||||||||||||| ||  |||||||||||||||    
T  31296856 agtatgagagataaagttgtcaaa-acgttgtcacaaaatggttgtacaaatatcatttctct 31296917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 34134776 - 34134842
Alignment:
Q  32 atgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    |||| ||||| ||||| |||||||||| | | ||||| |||||||||| || |||||||||||||||    
T  34134776 atgtcagtatgagagagaaagttgtcagaaaagttgttacaaaatggttgtaaaaatatcatttctc 34134842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 43057131 - 43057061
Alignment:
Q  31 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaa 101  Q
    ||||| ||||||||||| |||||||||||| | ||||| | ||| |||| ||  |||||||||||||||||    
T  43057131 aatgtgagtataagagagaaagttgtcacaaaagttgttaaaaagtggttgttcaaatatcatttctctaa 43057061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 2563771 - 2563707
Alignment:
Q  31 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcattt 95  Q
    ||||||||||| ||||| |||||||||||| | ||||||| |||||||  ||  |||||||||||    
T  2563771 aatgtaagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcattt 2563707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 9990776 - 9990728
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcaca 60  Q
    ||||||||||||||||   ||||| ||||||||||| ||||||||||||    
T  9990776 agagagaaagtaaaaagataatgtgagtataagagagaaagttgtcaca 9990728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 14328467 - 14328379
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctcta 100  Q
    ||||||||||||||||   ||||| ||||| ||||| |||||||||||| | ||||| | ||||| || ||  | ||||||||||||||    
T  14328467 agagagaaagtaaaaatataatgtgagtatgagagaaaaagttgtcacaaaagttgttagaaaattgttgtacatatatcatttctcta 14328379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 32975143 - 32975095
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcaca 60  Q
    |||||||||||||||||  ||||| ||||| ||||||||| ||||||||    
T  32975143 agagagaaagtaaaaaattaatgtgagtatgagagataaaattgtcaca 32975095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 36133040 - 36132973
Alignment:
Q  31 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||| ||||| |||||||||||||||||| |  |||||||||| |||| ||  |||||||||||||||    
T  36133040 aatgtgagtatgagagataaagttgtcaca-aaattgtcacaaagtggttgtacaaatatcatttctct 36132973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 39449103 - 39449190
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctcta 100  Q
    ||||| ||||||||||| || ||| ||||| | ||| |||||||| ||| | |||||||||||||||  ||  ||||||||||||||||    
T  39449103 agagataaagtaaaaaatga-tgtgagtatgaaagagaaagttgtaacaaaagttgtcacaaaatggatgttcaaatatcatttctcta 39449190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 40504291 - 40504223
Alignment:
Q  31 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||| ||||||||||| ||| ||||||||   ||||||| |||||||| ||  |||||||||||||||    
T  40504291 aatgtgagtataagagagaaatttgtcacaacagttgtcataaaatggttgttcaaatatcatttctct 40504223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0416 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 6943 - 6861
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcattt 95  Q
    |||||||||||||||||  ||||| ||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  6943 agagagaaagtaaaaaat-aatgtgagtatgagagataaagttgtcacatagattgtcacaaaatggttgtcaaaatatcattt 6861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 39692381 - 39692302
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatc 91  Q
    |||||||||||||||||  ||||| | ||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39692381 agagagaaagtaaaaaaataatgtgattatgagagataaagttgtcacataggttgtcacaaaatggttgtcaaaatatc 39692302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 2621868 - 2621784
Alignment:
Q  15 gagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    |||||||||||||   |||||||||||||||||||||||||||||| | ||| ||||||| | || ||  |||||||||||||||    
T  2621868 gagaaagtaaaaatataatgtaagtataagagataaagttgtcacaaaagttatcacaaattagttgtataaatatcatttctct 2621784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 33279534 - 33279617
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcattt 95  Q
    ||||||||||||||||   ||||||||||| |||||||||||||||||| | ||||| |  ||||||| ||  |||||||||||    
T  33279534 agagagaaagtaaaaatataatgtaagtatgagagataaagttgtcacaaaagttgttaagaaatggttgtacaaatatcattt 33279617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 43285948 - 43286035
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||||||||||||||   ||||| ||||| ||||| |||||||||||| | ||| | | |||||||| ||| |||||||||||||||    
T  43285948 agagagaaagtaaaaatataatgtgagtatgagagagaaagttgtcacaaaagttattagaaaatggttgtccaaatatcatttctct 43286035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 3946306 - 3946236
Alignment:
Q  32 atgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaat 102  Q
    |||| ||||| ||||| |||||||||||| | |||||||||||||||  ||  ||||||||||||||||||    
T  3946306 atgtgagtatgagagagaaagttgtcacaaaagttgtcacaaaatggatgttcaaatatcatttctctaat 3946236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 25830231 - 25830317
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    ||||||||||||||||   ||||| ||||| ||||| |||||||||||| | ||||| | |||||||| ||  ||||||||||||||    
T  25830231 agagagaaagtaaaaatataatgtgagtatgagagagaaagttgtcacaaaagttgttagaaaatggttgtacaaatatcatttctc 25830317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 4658267 - 4658335
Alignment:
Q  31 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||||||||| ||||| |||||||||||| | ||||||| |||||||  ||  |||||||||||||||    
T  4658267 aatgtaagtatgagagaaaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctct 4658335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 7598791 - 7598708
Alignment:
Q  15 gagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    |||||||||||||   ||||| ||||| ||||| ||||| |||||| | ||||||| |||||||| ||  ||||||||||||||    
T  7598791 gagaaagtaaaaacataatgtgagtatgagagagaaagtggtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctc 7598708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 25987791 - 25987858
Alignment:
Q  31 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    ||||| ||||| |||||||||||||||||| | ||||| | |||||||| ||  ||||||||||||||    
T  25987791 aatgtgagtatgagagataaagttgtcacaaaagttgtaaaaaaatggttgttcaaatatcatttctc 25987858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 33100454 - 33100541
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||||||| ||||||   ||||| ||||| ||||| |||||||||||| | ||||| | |||||||| ||  |||||||||||||||    
T  33100454 agagagaaaataaaaatgtaatgtgagtatgagagagaaagttgtcacaaaagttgttataaaatggttgttcaaatatcatttctct 33100541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 35067246 - 35067159
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||||||||||||||   ||||| ||||| ||||| |||||||||||| | ||||| |  ||||||| ||  |||||||||||||||    
T  35067246 agagagaaagtaaaaatataatgtgagtatgagagagaaagttgtcacaaaagttgttaagaaatggttgtacaaatatcatttctct 35067159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 12284255 - 12284341
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    ||||||||||||||||   ||| | ||||| ||||| |||||||||||| | ||||||  |||||||| ||  ||||||||||||||    
T  12284255 agagagaaagtaaaaacaaaatatgagtatgagagagaaagttgtcacaaacgttgtccaaaaatggttgttcaaatatcatttctc 12284341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 34718200 - 34718115
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    ||||| |||||||||||  ||||| ||||| ||||| |||||||| ||| | |||||||||||||||  ||  ||||||||||||||    
T  34718200 agagataaagtaaaaaat-aatgtgagtatgagagagaaagttgtaacaaaagttgtcacaaaatggatgttcaaatatcatttctc 34718115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 42786645 - 42786731
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    ||||| ||||||||||   ||||| ||||||||||| |||||||||||| |  |||| | |||||||| ||  ||||||||||||||    
T  42786645 agagaaaaagtaaaaatataatgtgagtataagagagaaagttgtcacaaaaattgtaagaaaatggttgtacaaatatcatttctc 42786731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 9549185 - 9549273
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaa 101  Q
    ||||| |||||||||||  ||||| ||||| ||||| ||| |||||||| | |||||||||||||||  ||  ||||||||||| |||||    
T  9549185 agagataaagtaaaaaat-aatgtgagtatgagagagaaaattgtcacaaaagttgtcacaaaatggatgttcaaatatcatttttctaa 9549273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 7271937 - 7271889
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcaca 60  Q
    ||||||| |||||||||  ||||| ||||| ||||||||||||||||||    
T  7271937 agagagagagtaaaaaattaatgtgagtatgagagataaagttgtcaca 7271889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 7777165 - 7777213
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcaca 60  Q
    ||||||||||||||||   ||||| ||||||||||| ||||||||||||    
T  7777165 agagagaaagtaaaaatataatgtgagtataagagagaaagttgtcaca 7777213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 7795292 - 7795376
Alignment:
Q  14 agagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    ||||||||||||||   ||||||||||||||||| ||| |||||||| | ||||| | ||||| ||  |  ||||||||||||||    
T  7795292 agagaaagtaaaaatataatgtaagtataagagagaaaattgtcacaaaagttgttaaaaaatagttctataaatatcatttctc 7795376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 10692524 - 10692476
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcaca 60  Q
    ||||||||||||||||   ||||| ||||| ||||||||||||||||||    
T  10692524 agagagaaagtaaaaagataatgtgagtatgagagataaagttgtcaca 10692476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 23793082 - 23793141
Alignment:
Q  18 aaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatgg 78  Q
    |||||||||||  ||||| ||||| ||||| || ||||||||||| |||||||||||||||    
T  23793082 aaagtaaaaaat-aatgtgagtatgagagagaatgttgtcacataagttgtcacaaaatgg 23793141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 34873922 - 34873874
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcaca 60  Q
    |||||||||||||||||  ||||| ||||| ||| ||||||||||||||    
T  34873922 agagagaaagtaaaaaaataatgttagtatgagaaataaagttgtcaca 34873874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 42768291 - 42768243
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcaca 60  Q
    |||||||||||||||||  ||||| ||||| ||||| ||||||||||||    
T  42768291 agagagaaagtaaaaaaataatgtgagtatgagagaaaaagttgtcaca 42768243  T

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Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 43397864 - 43397781
Alignment:
Q  14 agagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    |||||||||||||||  ||||| ||||| ||||| |||||||| ||| | ||||| | |||||||| ||  ||||||||||||||    
T  43397864 agagaaagtaaaaaaataatgtgagtatgagagagaaagttgtaacaaaagttgt-aaaaaatggttgttcaaatatcatttctc 43397781  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 9742367 - 9742451
Alignment:
Q  14 agagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    ||||||| |||||||  ||||| ||||| |||||| ||||||||| |||  ||||||||||||||| ||||||||||||||||||    
T  9742367 agagaaaataaaaaaataatgtgagtatgagagatgaagttgtcagataacttgtcacaaaatggttgtcaaaatatcatttctc 9742451  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 22098341 - 22098255
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    ||||||||||||||||   ||||| ||||| ||||| |||||||||||| | ||||| | |||||||| ||  ||||||||||||||    
T  22098341 agagagaaagtaaaaatataatgtgagtatgagagagaaagttgtcacaaaagttgttagaaaatggttgtacaaatatcatttctc 22098255  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 18695384 - 18695315
Alignment:
Q  32 atgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctctaa 101  Q
    |||| ||||| ||||| |||||||||||| | ||||| |||||||||| ||  |||||||||||||||||    
T  18695384 atgtgagtatgagagagaaagttgtcacaaaagttgttacaaaatggttgtacaaatatcatttctctaa 18695315  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 8920144 - 8920076
Alignment:
Q  32 atgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctcta 100  Q
    |||| ||||| ||||| |||||||||||| | |||||||||||||||  ||  ||||||||||||||||    
T  8920144 atgtgagtatgagagagaaagttgtcacaaaagttgtcacaaaatggatgttcaaatatcatttctcta 8920076  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 30640875 - 30640788
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctcta 100  Q
    ||||| |||||||||||  ||||||| ||| ||||| |||||||| ||| | |||||||||||||||  ||  ||||||||||||||||    
T  30640875 agagataaagtaaaaaat-aatgtaaatatgagagagaaagttgtaacaaaagttgtcacaaaatggatgttcaaatatcatttctcta 30640788  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 1274443 - 1274357
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    |||||| |||||||||   ||||| ||||| | |||||||||||||||| | ||||||| |||||||| ||  |||||||||||||||    
T  1274443 agagaggaagtaaaaaggtaatgtgagtatgaaagataaagttgtcacaaaagttgtca-aaaatggttgttcaaatatcatttctct 1274357  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 35075561 - 35075648
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||||||| ||||||   ||||| ||||| ||||| |||||||||||||  ||||||| |||||| | ||  |||||||||||||||    
T  35075561 agagagaaaataaaaatataatgtgagtatgagagaaaaagttgtcacatcagttgtcaaaaaatgattgttcaaatatcatttctct 35075648  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 21922150 - 21922216
Alignment:
Q  32 atgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    |||| ||||| ||||| |||||||||||| | |||||||||||||||  ||  ||||||||||||||    
T  21922150 atgtgagtatgagagagaaagttgtcacaaacgttgtcacaaaatggatgttcaaatatcatttctc 21922216  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 28306118 - 28306203
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    ||||||||||||| ||   ||||| ||||| |||||||||||||||||| | ||||| | |||||||| ||  ||||||||||||||    
T  28306118 agagagaaagtaagaagataatgtgagtatgagagataaagttgtcacaaaagttgt-aaaaaatggttgttcaaatatcatttctc 28306203  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 35634822 - 35634907
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    ||||||||| ||||||   ||||||||||||||||| |||||||| ||| | ||||||| |||||| | ||  ||||||||||||||    
T  35634822 agagagaaactaaaaagataatgtaagtataagagagaaagttgtaacaaaagttgtca-aaaatgattgttcaaatatcatttctc 35634907  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 13089786 - 13089854
Alignment:
Q  31 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||| ||||| | ||| |||||||||||| | ||||||| |||||||| ||  |||||||||||||||    
T  13089786 aatgtgagtatgaaagagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctct 13089854  T

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Target: scaffold0085 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 22841 - 22922
Alignment:
Q  14 agagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcattt 95  Q
    ||||||| |||||||  ||||| ||||||||| |||||||||||| | | |||||||||||||| | ||  |||||||||||    
T  22841 agagaaattaaaaaaacaatgtgagtataagaaataaagttgtcataaaagttgtcacaaaatgattgttcaaatatcattt 22922  T

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Target: scaffold0432 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 6505 - 6593
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctcta 100  Q
    |||||||||||| || |  ||||| ||||| |||||||||||||||||| | ||||| | |||||| | ||  ||||||||||||||||    
T  6505 agagagaaagtagaagaacaatgtgagtatgagagataaagttgtcacaaaagttgttaaaaaatgattgttcaaatatcatttctcta 6593  T

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Target: scaffold0532 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 11049 - 10964
Alignment:
Q  12 agagagaaagtaaaaaacgaatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctc 98  Q
    ||||| |||||||||||  ||||| ||||| ||||| |||||||||||| | |||||| ||||||||  ||  ||||||||||||||    
T  11049 agagataaagtaaaaaat-aatgtgagtatgagagagaaagttgtcacaaaagttgtcccaaaatggatgttcaaatatcatttctc 10964  T

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Target: scaffold0034 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 101910 - 101978
Alignment:
Q  31 aatgtaagtataagagataaagttgtcacataggttgtcacaaaatggtagtcaaaatatcatttctct 99  Q
    ||||| ||||| ||||| |||||||||||| | ||||||| |||||||| ||  | |||||||||||||    
T  101910 aatgtgagtatgagagagaaagttgtcacaaaagttgtcaaaaaatggttgttcagatatcatttctct 101978  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 73081 - 73117
Alignment:
Q  64 gttgtcacaaaatggtagtcaaaatatcatttctcta 100  Q
    ||||||||||||| || ||||||||||||||||||||    
T  73081 gttgtcacaaaatagttgtcaaaatatcatttctcta 73117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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