View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1878_low_2 (Length: 525)
Name: NF1878_low_2
Description: NF1878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1878_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 20 - 516
Target Start/End: Complemental strand, 5541846 - 5541350
Alignment:
| Q |
20 |
gattccccacacagcaatacggtatccggtcttcaccgagtatagaccattgcgcttctcttgccacaacactttgtcttcctgaatcgagccaaataag |
119 |
Q |
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| T |
5541846 |
gattccccacacagcaatacggtatccggtcttcaccgagtatagaccattgcgcttctcttgccacaacactttgtcttcctgaatcgagccaaataag |
5541747 |
T |
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| Q |
120 |
ggagtttccagaatagcacgcaccccttcaacagaaaacaaatcgactattttatcaacatctcttctctcattcaatcatcaaatcgggcaaaaacata |
219 |
Q |
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| T |
5541746 |
ggagtttccagaatagcacgcaccccttcaacagaaaacaaatcgactattttatcaacatctcttctctcattcaatcatcaaatcgggcaaaaacata |
5541647 |
T |
|
| Q |
220 |
tgatacacaccttgattttagggcgactattatagctttttcaagtgtgtatttacaattaaaattgtaacataattgaataaaatcttataagtaaacg |
319 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5541646 |
tgatacacaccttgattttagggcaactattatagctttttcaagtgtgtatttacaattaaaattgtaacataattgaataaaatcttataagtaaacg |
5541547 |
T |
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| Q |
320 |
agtttatttattgagtctaataaccaaccatattatagtgcatataaaggtttacaaaaacagcaaattgtattgtaccatctcattacatcattatatt |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5541546 |
agtttatttattgagtctaataaccaaccatattatagtgcatataaaggtttacaaaaacggcaaattgtattgtaccatctcattacatcattatatt |
5541447 |
T |
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| Q |
420 |
actttattgaacttgttttcactatgataatatattgaaatgtgattctctccaaaggtgtagtccagtacgtgttgggacactaaaggagtattat |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5541446 |
actttattgaacttgttttcactatgataatatattgaaatgtgattctctccaaaggtgtagtccagtacgtgttgggacactaaaggagtattat |
5541350 |
T |
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