View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1878_low_20 (Length: 253)
Name: NF1878_low_20
Description: NF1878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1878_low_20 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 12217992 - 12217757
Alignment:
| Q |
18 |
aacaagcaatccttcaatacccccaaagtaaacaaactcatctccaaaacaggcggcgaaatatattgatatgactccttctctaaatcaagagaaacaa |
117 |
Q |
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| T |
12217992 |
aacaagcaatccttcaaaacccccaaagtaaacaaactcatctccaaaacaggcggcgaaatatattgatatgactccttctctaaatcaagagaaacaa |
12217893 |
T |
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| Q |
118 |
taaaactacgaaaaccatcataaaccaaccaattaacggcaccacccacaaatactcctgatggacgatacaaggataaatttcgaaagtcttgtatttt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
12217892 |
taaaactacgaaaaccatcataaaccaaccaattaacggcaccacccacaaatactcctgatggacgatacaaggataaatttgggaagtcttgtatttt |
12217793 |
T |
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| Q |
218 |
tctccaagaatctgtacctagagtgtaaactctagt |
253 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
12217792 |
tctccaagaatctgtacctagagtgtaaactctagt |
12217757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 7427690 - 7427929
Alignment:
| Q |
17 |
gaacaagcaatccttcaatacccccaaagtaaacaaactcatctccaaaacaggcggcgaaatatattgatatgactccttctctaaatcaagagaaaca |
116 |
Q |
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| T |
7427690 |
gaacaagcaatccttcaaaacccccaaagtatacaaactcatttccgaaacaggctgcgaaatatattgatatgactccttctctaaatcaagagaaaca |
7427789 |
T |
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| Q |
117 |
ata---aaactacgaaaaccatcataaaccaaccaattaacggcaccacccacaaatactcctgatggacgatacaaggataaatttcgaaagtcttgta |
213 |
Q |
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| T |
7427790 |
ataataaaactacgaaaaccatcataaaccaaccaattaacagccccactcacaaatactcccgatggatgatacaaggataaatgtggaaagtcttgta |
7427889 |
T |
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| Q |
214 |
tttttctccaagaatctgtacctagagtgtaaactctagt |
253 |
Q |
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| T |
7427890 |
tttttctccaagaatctgtacctagagtgtaaactctagt |
7427929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 175
Target Start/End: Complemental strand, 2456141 - 2456049
Alignment:
| Q |
83 |
ttgatatgactccttctctaaatcaagagaaacaataaaactacgaaaaccatcataaaccaaccaattaacggcaccacccacaaatactcc |
175 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| |||| ||| |||||| |||||||||||| | | || |||||||||||| |
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| T |
2456141 |
ttgatatgactccttctccaaatcaagagaaacaataaaaatacgcaaaagatcatatgtcaaccaattaacagtgctactcacaaatactcc |
2456049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 2475006 - 2474970
Alignment:
| Q |
83 |
ttgatatgactccttctctaaatcaagagaaacaata |
119 |
Q |
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|||||||||||||||||||||||||||||||| |||| |
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| T |
2475006 |
ttgatatgactccttctctaaatcaagagaaagaata |
2474970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 2491982 - 2491946
Alignment:
| Q |
83 |
ttgatatgactccttctctaaatcaagagaaacaata |
119 |
Q |
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|||||||||||||||||||||||||||||||| |||| |
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| T |
2491982 |
ttgatatgactccttctctaaatcaagagaaagaata |
2491946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 114
Target Start/End: Original strand, 754760 - 754791
Alignment:
| Q |
83 |
ttgatatgactccttctctaaatcaagagaaa |
114 |
Q |
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| T |
754760 |
ttgatatgactccttctctaaatcaagagaaa |
754791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 120
Target Start/End: Complemental strand, 1437899 - 1437862
Alignment:
| Q |
83 |
ttgatatgactccttctctaaatcaagagaaacaataa |
120 |
Q |
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|||||| | ||||||||||||||||||||||||||||| |
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| T |
1437899 |
ttgatacgtctccttctctaaatcaagagaaacaataa |
1437862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 24723248 - 24723212
Alignment:
| Q |
83 |
ttgatatgactccttctctaaatcaagagaaacaata |
119 |
Q |
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|||||| ||||||||||| |||||||||||||||||| |
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| T |
24723248 |
ttgataagactccttctccaaatcaagagaaacaata |
24723212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 7160913 - 7160949
Alignment:
| Q |
85 |
gatatgactccttctctaaatcaagagaaacaataaa |
121 |
Q |
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|||| ||||||||||| |||||||||||||||||||| |
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| T |
7160913 |
gataagactccttctccaaatcaagagaaacaataaa |
7160949 |
T |
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