View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1878_low_22 (Length: 237)
Name: NF1878_low_22
Description: NF1878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1878_low_22 |
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| [»] scaffold1004 (1 HSPs) |
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| [»] scaffold0760 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 12217657 - 12217438
Alignment:
| Q |
1 |
tgcaatataattcaaagtaggcaatatcttgaacattcgaatggaagggttccacaaaacagccgatccttgacgcatggtgagacaaaggatgccggca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12217657 |
tgcaatataattcaaagtaggcaatatcttgaacattcgaatggaagggttccacaaaacagccgatccttgacgcatggtgagacaaaggatgccggca |
12217558 |
T |
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| Q |
101 |
caagagcacaccgctaaaggtgcgccatatgtacttttgagactgatagggtaagtgagttgtgtctgcgtgacactagaatttgagaaaacagaatgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12217557 |
caagagcacaccgctaaaggtgcgccatatgtacttttgagactgatagggtaagtgagttgtgtctgcgtgacactagaatttgagaaaacagaatgga |
12217458 |
T |
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| Q |
201 |
tagggaaatcatacataaaa |
220 |
Q |
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|||||||||||||||||||| |
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| T |
12217457 |
tagggaaatcatacataaaa |
12217438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 7428029 - 7428239
Alignment:
| Q |
10 |
attcaaagtaggcaatatcttgaacattcgaatggaagggttccacaaaacagccgatccttgacgcatggtgagacaaaggatgccggcacaagagcac |
109 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7428029 |
attcaaagtaggcaatatcttgaacattccaatgaaagggttccacaaaacagcagatccttgacgcatggtgagacaaaggatgccggcgcaagagcac |
7428128 |
T |
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| Q |
110 |
accgctaaaggtgcgccatatgtacttttgagactgatagggtaagtgagttgtgtctgcgtgacactagaatttgagaaaacagaatggatagggaaat |
209 |
Q |
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| T |
7428129 |
accgctaaaggtgcaccatatgtacttttgagactgatagggtaagtgagttgtgtctgcgtgacactagaagttgagaaaacagaatggatagggaaat |
7428228 |
T |
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| Q |
210 |
catacataaaa |
220 |
Q |
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|||||| |||| |
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| T |
7428229 |
catacacaaaa |
7428239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 771956 - 772006
Alignment:
| Q |
13 |
caaagtaggcaatatcttgaacattcgaatggaagggttccacaaaacagc |
63 |
Q |
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||||| ||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
771956 |
caaaggaggcaatatcttgaatttttgaatggaagggttccacaaaacagc |
772006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 2455467 - 2455417
Alignment:
| Q |
13 |
caaagtaggcaatatcttgaacattcgaatggaagggttccacaaaacagc |
63 |
Q |
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||||| ||||||||||||||| || |||||||||||||||||||||||| |
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| T |
2455467 |
caaaggaggcaatatcttgaattctccaatggaagggttccacaaaacagc |
2455417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 13497827 - 13497787
Alignment:
| Q |
19 |
aggcaatatcttgaacattcgaatggaagggttccacaaaa |
59 |
Q |
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| T |
13497827 |
aggcaatatcttgaattttctaatggaagggttccacaaaa |
13497787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1004 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold1004
Description:
Target: scaffold1004; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 1773 - 1679
Alignment:
| Q |
13 |
caaagtaggcaatatcttgaacattcgaatggaagggttccacaaaacagccgatccttgacgcatggtgagacaaaggatgccggcacaagagc |
107 |
Q |
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||||| |||||| |||||||| ||| |||||||||||||||||||||||| | || | | ||||||| ||||||||||||| ||||||||| |
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| T |
1773 |
caaaggaggcaaaatcttgaatgttctaatggaagggttccacaaaacagcaggaccattatttatggtgaaacaaaggatgccgtcacaagagc |
1679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0760 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0760
Description:
Target: scaffold0760; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 4268 - 4176
Alignment:
| Q |
13 |
caaagtaggcaatatcttgaacattcgaatggaagggttccacaaaacagccgatccttgacgcatggtgagacaaaggatgccggcacaaga |
105 |
Q |
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||||| |||||| |||||||| ||| |||||||||||||||||||||||| | || | | ||||||| ||||||||||||| ||||||| |
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| T |
4268 |
caaaggaggcaaaatcttgaatgttctaatggaagggttccacaaaacagcaggaccattatttatggtgaaacaaaggatgccgtcacaaga |
4176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 24417913 - 24418011
Alignment:
| Q |
13 |
caaagtaggcaatatcttgaacattcgaatggaagggttccacaaaacagccgatccttgacgcatggtgagacaaaggatgccggcacaagagcacac |
111 |
Q |
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||||| |||||| |||||||| ||| ||| |||||||||||||||| ||| || || | | |||||||| ||||||||||||| ||||||||||| |
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| T |
24417913 |
caaaggaggcaagatcttgaatgttctaatcgaagggttccacaaaatagcagaaccgtcagccatggtgaaacaaaggatgccgttgcaagagcacac |
24418011 |
T |
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