View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1878_low_3 (Length: 520)
Name: NF1878_low_3
Description: NF1878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1878_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 15 - 509
Target Start/End: Original strand, 38326307 - 38326801
Alignment:
| Q |
15 |
tgaatgacaagaatgaacttgaaatctgtagctgcgagaatcaaacaagatggatttataatggttctcaaatccttttgaatgattccaagaagtgctt |
114 |
Q |
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| T |
38326307 |
tgaatgacaagaatgaacttgaaatcggtagctgcgagaatcaaacaagatggatttataatggttctcaaatccttttgaatgattccaagaagtgctt |
38326406 |
T |
|
| Q |
115 |
aactgctattggtgaagggcttccagtagctatttctgatgattacgaaaacaagaacagttcatggaaatctgaatcactttcgagacttcatttggct |
214 |
Q |
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| T |
38326407 |
aactgctattggtgaagggcttccagtagctatttctgatgattacgaaaacaagaacagttcatggaaatctgaatcactttctagacttcatttggct |
38326506 |
T |
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| Q |
215 |
actgtggatcaaaatgggaaacatctttgcttgcataaggattataactcatctgttgttgtgacttcaaaatgtatctgcataaatgatgattctcttt |
314 |
Q |
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| T |
38326507 |
actgtggatcaaaatgggaaacatctttgcttgcataaggattataactcatcttttgttgtgacttcaaaatgtatctgcataaatgatgattctcttt |
38326606 |
T |
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| Q |
315 |
gtcttgatgatccacagagccaatggttccaacttgttgcaaccaatgtttagtttgagtagctagttgctctatcatattatctttatagtttgtctaa |
414 |
Q |
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| T |
38326607 |
gtcttgatgatccacagagccaatggttccaacttgttgcaaccaatgtttagtttgagtaactagttgctctatcatattatctttatagtttgtctaa |
38326706 |
T |
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| Q |
415 |
ttgaattgttttataattatagaacttttaatatgataatcttgttgcaatgttaatgttttgtaaccttctattgtatttaactgtagtttcat |
509 |
Q |
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| T |
38326707 |
ttgaattgttttataattatagaacttttaatatgataatcttgttgcaatgttaatgttttgtaaccttctattgtatttaagtgtagtttcat |
38326801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 153; Significance: 7e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 15 - 374
Target Start/End: Original strand, 10766160 - 10766522
Alignment:
| Q |
15 |
tgaatgacaagaatgaacttgaaatctgtagctgcgagaatcaaacaagatggatttataatggttctcaaatccttttgaatgattccaagaagtgctt |
114 |
Q |
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| T |
10766160 |
tgaatgaaaacaataagcttgaaattggtagctgtgagaatcaaaagaggtggacttataagggttctcaaatctttttgaaagagagtcaaaagtgctt |
10766259 |
T |
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| Q |
115 |
aactgctattggtgaagggcttccagtagctatttctgatgattacgaaaacaagaacagttcatggaaatctgaatcactttcgagacttcatttggct |
214 |
Q |
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| T |
10766260 |
aactgcttccggtgaagggcttccagtttccgtttctgatgattgcgaaagcaagaatagttcatggaaaactgcatcaccttctaaacttcatttggct |
10766359 |
T |
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| Q |
215 |
actgtggatcaaaatgggaaacatc---tttgcttgcataaggattataactcatctgttgttgtgacttcaaaatgtatctgcataaatgatgattctc |
311 |
Q |
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| T |
10766360 |
actgttaatcaagatggcaaacaacaactttgcttgcaaaaggatactaattcatctgctgttgtgacttcaaaatgtatctgcatacatgatgattctc |
10766459 |
T |
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| Q |
312 |
tttgtcttgatgatccacagagccaatggttccaacttgttgcaaccaatgtttagtttgagt |
374 |
Q |
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| T |
10766460 |
tttgtcttgatgatcctcagagccaatggtttcaacttgttgccaccaatgtttagtttgagt |
10766522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 15 - 349
Target Start/End: Original strand, 2105300 - 2105643
Alignment:
| Q |
15 |
tgaatgacaagaatgaacttgaaatctgtagctgcgagaatcaaacaagatggatttataatggttctcaaatccttttgaatgattcca---agaagtg |
111 |
Q |
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| T |
2105300 |
tgaatgacaaaaatgaacttgaatttggtaactttgagaatcaaaagagatggatttatgatggttctcaaatccttttga-tgacactacatagaagtg |
2105398 |
T |
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| Q |
112 |
cttaactgctattggtgaagggcttccagta-gctatttctgatgattacgaaaacaagaacagttcatggaaatctgaatcactttc---gagacttca |
207 |
Q |
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| T |
2105399 |
cttaactgctactggtgaatggctttcaagatgttgtttctgatgattgtcttaataagaacaattaatggaaatctgtatcactttctatgcttcttca |
2105498 |
T |
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| Q |
208 |
tttggctactgtggatcaaaatgggaaacatc-tttgcttgcataaggattataactcatctgttgttgtgacttcaaaatgtatctgcataaat----g |
302 |
Q |
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| T |
2105499 |
tttggctactatgaatcaaaacgggaaacaacttttacttgcataaggattccaactcatctgctgttgtaactacaaaatgtatctgcattaatgatgg |
2105598 |
T |
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| Q |
303 |
atgattctctttgtcttgatgatccacagagccaatggttccaactt |
349 |
Q |
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| T |
2105599 |
atgattctc--tgtcttgatgatccatagagccaatggttccaactt |
2105643 |
T |
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