View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1878_low_4 (Length: 498)
Name: NF1878_low_4
Description: NF1878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1878_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 11 - 482
Target Start/End: Original strand, 25138511 - 25138980
Alignment:
| Q |
11 |
catagggcatcgaatacacatcaattcaaacatctcgtttttaaacaaaagggaattaagagatgaagcccccctcaaagatgctattatattttggcat |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
25138511 |
cataaggcatcgaatacacatcaattcaaacatctcgtttttaaacaaaagggaattaagagatgaagcccctctcaaagatgctattat--tttggcat |
25138608 |
T |
|
| Q |
111 |
ctacaaaagacaacaatttaggattgagacaaagtttccacatacatttgcacctttcgcagactttaagaaagggaattgaagataaacattttgttct |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25138609 |
ctacaaaagacaacaatttaggattgagacaaagtttccacatacatttgcacctttcgcagactttaagaaagggaattgaagataaacattttgttct |
25138708 |
T |
|
| Q |
211 |
tttacttcatgtcattgtccaacttctctatacatattcttcctcttttaccttctctatatattttcaaaaaattttcttccnnnnnnnnctcatgttt |
310 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
25138709 |
tttacttcatgtcattgtccaacttctctatacattttcttcctcttttaccttctctatatattttcaaatttttttcttccttttttttctcatgttt |
25138808 |
T |
|
| Q |
311 |
tgcatgaaagtaagggaaagtctaggatctaaaatctcttatatactctttttaaacgcgcataatattctgcnnnnnnnnnnnnnnngggatatatgct |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25138809 |
tgcatgaaagtaagggaaagtctaggatctaaaatctcttatatactctttttaaacgcgcataatattctgcttttttgtcttttttgggatatatgct |
25138908 |
T |
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| Q |
411 |
tttgatgaacttatcatttgaaagtgatgattagaatgagggatccaaggcactttcatgtgcttctatatg |
482 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25138909 |
tttgatgaacttatcatttgaaagtgatgattagaatgagggatccaaggcactttcatgtgcttctatatg |
25138980 |
T |
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