View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1878_low_8 (Length: 414)

Name: NF1878_low_8
Description: NF1878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1878_low_8
NF1878_low_8
[»] chr8 (3 HSPs)
chr8 (1-414)||(36465199-36465594)
chr8 (264-414)||(36474377-36474548)
chr8 (8-101)||(26617448-26617541)
[»] chr4 (3 HSPs)
chr4 (8-103)||(36895140-36895235)
chr4 (8-103)||(34390529-34390623)
chr4 (47-108)||(5614603-5614664)
[»] chr1 (2 HSPs)
chr1 (8-99)||(23085635-23085726)
chr1 (8-99)||(23722671-23722762)
[»] chr3 (1 HSPs)
chr3 (8-103)||(27156890-27156985)
[»] chr2 (1 HSPs)
chr2 (11-103)||(7305808-7305900)
[»] chr7 (1 HSPs)
chr7 (8-100)||(31047513-31047605)


Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 36465594 - 36465199
Alignment:
Q  1 atgaaatacatgaagaataatttcatccccattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||               
T  36465594 atgaaatacatgaagaataatttcatccccattaccacaacacaaacaagtgggagagatccctacaccccatttactccttcaaaaat----------- 36465506  T
Q  101 cgcacatgtgctagcaataaataaaagtttgaatgtgatatggttcatgccatttccaaagtgttttccaatctccctctgttgtcggaaaattctttaa 200  Q
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36465505 -------gtgctggcaataaataaaagtttgaatgtgatatggttcatgccatttccaaagtgttttccaatctccctctgttgtcggaaaattctttaa 36465413  T
Q  201 agatcattatcaaggacttttatacttgtcacctcattgtatatgctgaatatcaaacctcaactttctaaccaatataacacgtgctacatgttgtctt 300  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36465412 agatcattatcaaggacttttatacttctcacctcattgtatatgctgaatatcaaacctcaactttctaaccaatataacacgtgctacatgttgtctt 36465313  T
Q  301 agtgtgtgtcctatttttaaagtatcatttcactattaaaatagataacatggatttttgtttgtttggtgaaggcatgattacaggtggggcaggagca 400  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36465312 agtgtgtgtcctatttttaaagtatcatttctctattaaaatagataacatggatttttgtttgtttggtgaaggcatgattacaggtggagcaggagca 36465213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 414
Target Start/End: Complemental strand, 36474548 - 36474377
Alignment:
Q  264 ctttctaaccaatataacacgtgctacatgttgtcttagtgt---gtgtcctattttt---aaagtatcatttcactattaaaatagataacatggatt- 356  Q
    ||||||||||||||||||| |||||| |||||||||||||||    | |  |||||||   ||||||||||||| |||||||||||  ||| |||||||     
T  36474548 ctttctaaccaatataacatgtgctatatgttgtcttagtgtttcttataatatttttgtcaaagtatcatttctctattaaaatacgtaatatggattg 36474449  T
Q  357 ------------tttgtttgtttg--gtgaaggcatgattacaggtggggcaggagcaactgttttatacaa 414  Q
                ||||||||||||  |||||| ||||||||| ||||| |||||||||||||||||||||||    
T  36474448 aatgcatatgtgtttgtttgtttggtgtgaagtcatgattactggtggagcaggagcaactgttttatacaa 36474377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 26617448 - 26617541
Alignment:
Q  8 acatgaagaataatttcatccccattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaatgc 101  Q
    |||||||||||| |||||||  |||| |||||||||   ||||| |||||||| ||| |||||||| ||||||||   ||||| ||||||||||    
T  26617448 acatgaagaatagtttcatcttcatttccacaacacgggcaagtaggagagattccaccaccccatctactcctttggaaatttgtaagaatgc 26617541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 36895140 - 36895235
Alignment:
Q  8 acatgaagaataatttcatccccattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaatgcgc 103  Q
    ||||||| || |||||||||  |||| |||||||||   ||||| |||||||| ||| ||||||||||||||||||  ||||| ||||||||||||    
T  36895140 acatgaaaaacaatttcatcttcatttccacaacacgggcaagtaggagagattccaccaccccatttactccttcggaaatttgtaagaatgcgc 36895235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 34390529 - 34390623
Alignment:
Q  8 acatgaagaataatttcatccccattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaatgcgc 103  Q
    |||||||||| | |||||||  |||| ||||||||||  ||||| |||||||| ||| ||||| ||||||||||||  ||||| ||||||||||||    
T  34390529 acatgaagaacagtttcatcttcatttccacaacacaggcaagtaggagagattccaccaccc-atttactccttcggaaatttgtaagaatgcgc 34390623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 5614664 - 5614603
Alignment:
Q  47 caagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaatgcgcacatg 108  Q
    ||||| |||||||| ||| || ||||| ||||||||||| |||| |||||||||||| ||||    
T  5614664 caagtaggagagattccaccatcccatctactccttcaataatttgtaagaatgcgcccatg 5614603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 23085635 - 23085726
Alignment:
Q  8 acatgaagaataatttcatccccattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaat 99  Q
    |||||||||| |||||||||  |||| ||| |||||   ||||| |||||||| ||| |||||||||||||||||| |||||| ||||||||    
T  23085635 acatgaagaacaatttcatcttcatttccataacacgtgcaagtaggagagattccaccaccccatttactccttcgaaaatttgtaagaat 23085726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 23722762 - 23722671
Alignment:
Q  8 acatgaagaataatttcatccccattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaat 99  Q
    |||||||||| |||||||||  |||| |||||||||  |||||| |||||||| ||| |||||||||||||||||   ||||| ||||||||    
T  23722762 acatgaagaacaatttcatcttcatttccacaacacggacaagtaggagagattccaccaccccatttactccttttgaaatttgtaagaat 23722671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 27156890 - 27156985
Alignment:
Q  8 acatgaagaataatttcatccccattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaatgcgc 103  Q
    |||||||||| | |||||||  |||| |||||||||   ||||| |||||||| ||| ||||||||||||||||||  ||||| ||||| ||||||    
T  27156890 acatgaagaacagtttcatcttcatttccacaacacgggcaagtaggagagattccaccaccccatttactccttcggaaatttgtaagtatgcgc 27156985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 7305808 - 7305900
Alignment:
Q  11 tgaagaataatttcatccccattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaatgcgc 103  Q
    ||||||| | |||||||  |||| |||||||||   ||||| |||||||| ||| || ||| |||||| ||||||||||| ||||||||||||    
T  7305808 tgaagaacagtttcatcttcatttccacaacacgggcaagtaggagagattccaccatcccgtttacttcttcaaaaatttgtaagaatgcgc 7305900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 31047605 - 31047513
Alignment:
Q  8 acatgaagaataatttcatccccattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaatg 100  Q
    |||||||||| |||||||||  |||||||||||||   | ||||||| || |||||||||| |||| |||| |||| ||| || |||| ||||    
T  31047605 acatgaagaacaatttcatcatcattaccacaacattgataagtgggtgaaatcccaacactccatctacttcttcgaaagttagtaataatg 31047513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University