View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1878_low_9 (Length: 407)
Name: NF1878_low_9
Description: NF1878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1878_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 2 - 392
Target Start/End: Original strand, 37880816 - 37881206
Alignment:
| Q |
2 |
atataactgattcatatcccatactgtttttgtttccatcattatttaggcaatgaaacaattctgaatattgtttagaaatcaagtcctctccaaaata |
101 |
Q |
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| T |
37880816 |
atataactgattcatatcccatactgtttttgtttccatcattatttaggcaatgaaacaattctgaatattgtttagaaatcaagtcctctccaaaata |
37880915 |
T |
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| Q |
102 |
acaaggatttgtattttcagctgaacttgaacaactcatgtttccaaataagccattattcacattgtgagtttgagttggtatttgaaattgatcttga |
201 |
Q |
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| T |
37880916 |
acaaggatttgtattttcagctgaacttgaacaactcatgtttcctaataagccattattcacattgtgtgtttgagttggtatttgaaattgatcttga |
37881015 |
T |
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| Q |
202 |
ttgtaaacttgattttgcacttgttgttgagtaccattagcagcattattgatttgttgttgattatgcgaacccaaatttatgttgttgtttaataatg |
301 |
Q |
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| T |
37881016 |
ttgtaaacttgattttgcacttgttgttgagtaccattagcagcattattgatttgttgttgattatgcgaacccaaatttatgttgttgtttaataatg |
37881115 |
T |
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| Q |
302 |
tggcagttgcagctagctttaacaattcagggttcatgaaagcttgagcaccacctaataagttcagaaatgatgggttcattgggttggt |
392 |
Q |
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| T |
37881116 |
tggccgttgcagctagctttaacaattcagggttcatgaaagcttgagcaccacctaataagttcagaaatgatgggttcattgggttggt |
37881206 |
T |
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