View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18790_high_11 (Length: 392)
Name: NF18790_high_11
Description: NF18790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18790_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 16 - 385
Target Start/End: Original strand, 40045276 - 40045645
Alignment:
| Q |
16 |
caggtttgttaccagcaagtgttctcacagggttggttaatgtatcaaagttagagctagatacaaaatcagaaataacatggaattgaagtagttcaag |
115 |
Q |
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| T |
40045276 |
caggtttgttaccagcaagtgttctcacagggttggttaatgtatcaaagttagagctagatacaaaatcagaaataacatggaattgaagtagttcaag |
40045375 |
T |
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| Q |
116 |
nnnnnnnncattggagagtgagttgaggaaccctggtttgagttctgagaaagctgaatcgtcgggtgcgaggatcgttaagccgccggattttatggtt |
215 |
Q |
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| T |
40045376 |
ttttttttcattggagagtgagttgaggaaccctggtttgagttctgagaaagctgaatcgtcgggtgcgaggatcgttaagccgccggattttatggtt |
40045475 |
T |
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| Q |
216 |
aggagctgtgagttgagctggttgattagttgagttgttttcatgagacggaggaaaatgttgaatgaattggcttgttttaggatttgaactatgtctg |
315 |
Q |
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| T |
40045476 |
aggagctgtgagttgagctggttgattagttgagttgttttcatgagacggaggaaaatgttgaatgaattggcttgttttaggatttgaactatgtctg |
40045575 |
T |
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| Q |
316 |
ttgtgggggtgggagtttcaggggtagtattgtcatttggtggaaatgtggggactaaggattttcttgg |
385 |
Q |
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| T |
40045576 |
ttgtgggggtgggagtttcaggggtagtattgtcatttggtggaaatgtggggactaagggttttgttgg |
40045645 |
T |
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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 22059591 - 22059518
Alignment:
| Q |
27 |
ccagcaagtgttctcacagggttggttaatgtatcaaagttagagctagatacaaaatcagaaataacatggaa |
100 |
Q |
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| T |
22059591 |
ccagcaagtgttctcacagggttggttagagtatcgaagttagagctagatacatagtctgaaataacatggaa |
22059518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 22075592 - 22075668
Alignment:
| Q |
27 |
ccagcaagtgttctcacagggttggttaatgtatcaaagttagagctagatacaaaatcagaaataacatggaattg |
103 |
Q |
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| T |
22075592 |
ccagcaagtgttctcacagggtttgtcaatgtgtcgaagttagagctagatacatagtctgaaataacatggaattg |
22075668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 19403330 - 19403257
Alignment:
| Q |
27 |
ccagcaagtgttctcacagggttggttaatgtatcaaagttagagctagatacaaaatcagaaataacatggaa |
100 |
Q |
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| T |
19403330 |
ccagcaagtgttctcacagggtttgtcaaagtatcgaaattagagctagatacgtagtctgaaataacgtggaa |
19403257 |
T |
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