View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18790_high_15 (Length: 343)

Name: NF18790_high_15
Description: NF18790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18790_high_15
NF18790_high_15
[»] chr8 (33 HSPs)
chr8 (19-203)||(14747761-14747946)
chr8 (203-322)||(13225067-13225185)
chr8 (202-325)||(41681132-41681254)
chr8 (202-328)||(19176712-19176837)
chr8 (197-328)||(11656448-11656578)
chr8 (202-272)||(33742920-33742990)
chr8 (203-322)||(44831246-44831364)
chr8 (202-318)||(19176288-19176403)
chr8 (203-328)||(9930079-9930203)
chr8 (202-271)||(34541026-34541095)
chr8 (204-322)||(41681562-41681679)
chr8 (205-322)||(31133648-31133764)
chr8 (203-322)||(11656885-11657003)
chr8 (202-326)||(12571861-12571984)
chr8 (207-323)||(33328161-33328276)
chr8 (207-322)||(9928912-9929026)
chr8 (133-195)||(30686541-30686603)
chr8 (202-328)||(31133218-31133343)
chr8 (195-272)||(11336999-11337076)
chr8 (202-328)||(44831667-44831792)
chr8 (204-272)||(9178112-9178180)
chr8 (207-322)||(12572279-12572393)
chr8 (208-272)||(13224645-13224708)
chr8 (206-328)||(33328562-33328683)
chr8 (203-272)||(8074028-8074097)
chr8 (201-269)||(4629794-4629862)
chr8 (202-237)||(9177665-9177700)
chr8 (198-228)||(10046659-10046689)
chr8 (203-249)||(10919686-10919732)
chr8 (207-272)||(4630263-4630328)
chr8 (154-195)||(30686728-30686769)
chr8 (291-328)||(33743341-33743378)
chr8 (202-254)||(35427308-35427360)
[»] scaffold0295 (2 HSPs)
scaffold0295 (202-328)||(4791-4916)
scaffold0295 (206-272)||(5268-5334)
[»] chr7 (26 HSPs)
chr7 (202-328)||(19830418-19830543)
chr7 (197-322)||(38859069-38859193)
chr7 (204-328)||(19590525-19590648)
chr7 (196-322)||(19590953-19591078)
chr7 (203-328)||(37786766-37786890)
chr7 (207-328)||(29100273-29100393)
chr7 (202-328)||(35289323-35289448)
chr7 (203-271)||(19830897-19830965)
chr7 (204-328)||(32005036-32005159)
chr7 (202-272)||(34533789-34533859)
chr7 (201-328)||(34534213-34534339)
chr7 (202-328)||(2659262-2659387)
chr7 (203-328)||(38858642-38858766)
chr7 (202-269)||(2658837-2658904)
chr7 (202-272)||(32004612-32004682)
chr7 (204-321)||(35288903-35289019)
chr7 (197-322)||(37787195-37787319)
chr7 (202-272)||(4478177-4478247)
chr7 (202-272)||(38160949-38161019)
chr7 (207-328)||(4641443-4641563)
chr7 (202-322)||(23952728-23952848)
chr7 (217-322)||(29099863-29099967)
chr7 (202-328)||(28583437-28583562)
chr7 (207-272)||(4641921-4641983)
chr7 (210-328)||(23953151-23953268)
chr7 (205-272)||(28584399-28584466)
[»] chr2 (36 HSPs)
chr2 (202-328)||(22374318-22374443)
chr2 (204-328)||(28616613-28616736)
chr2 (200-322)||(22374753-22374874)
chr2 (202-328)||(26538501-26538626)
chr2 (203-328)||(40027139-40027263)
chr2 (202-328)||(11090519-11090644)
chr2 (203-328)||(26538096-26538220)
chr2 (202-272)||(11090997-11091067)
chr2 (202-328)||(239351-239475)
chr2 (202-328)||(1978106-1978231)
chr2 (206-271)||(40815347-40815412)
chr2 (202-328)||(40815767-40815892)
chr2 (203-328)||(20444748-20444872)
chr2 (202-322)||(1978537-1978656)
chr2 (203-322)||(18450829-18450947)
chr2 (202-272)||(18451308-18451378)
chr2 (202-272)||(20440508-20440578)
chr2 (207-328)||(14432145-14432265)
chr2 (204-328)||(43058333-43058456)
chr2 (207-322)||(40027568-40027682)
chr2 (202-272)||(43058809-43058879)
chr2 (203-272)||(28617091-28617160)
chr2 (193-322)||(28847123-28847251)
chr2 (204-328)||(35779708-35779831)
chr2 (196-272)||(35781140-35781216)
chr2 (205-272)||(239829-239896)
chr2 (202-322)||(7446774-7446893)
chr2 (210-325)||(3025472-3025586)
chr2 (206-272)||(14432618-14432684)
chr2 (203-272)||(7446341-7446410)
chr2 (207-272)||(8425358-8425423)
chr2 (204-322)||(3025891-3026006)
chr2 (206-272)||(8972239-8972305)
chr2 (206-271)||(15551501-15551566)
chr2 (207-269)||(8425840-8425902)
chr2 (203-255)||(42192738-42192790)
[»] scaffold0273 (1 HSPs)
scaffold0273 (201-328)||(4629-4755)
[»] chr6 (34 HSPs)
chr6 (202-328)||(2319670-2319795)
chr6 (204-328)||(10900352-10900475)
chr6 (202-322)||(12935155-12935274)
chr6 (202-328)||(20741098-20741223)
chr6 (203-328)||(15828063-15828187)
chr6 (202-328)||(18257135-18257260)
chr6 (204-328)||(11277004-11277127)
chr6 (202-322)||(11445415-11445534)
chr6 (202-322)||(22219781-22219900)
chr6 (202-322)||(23075556-23075675)
chr6 (202-272)||(1149463-1149533)
chr6 (207-322)||(10899942-10900056)
chr6 (202-328)||(11444985-11445110)
chr6 (203-269)||(23073998-23074064)
chr6 (205-328)||(31470738-31470860)
chr6 (202-328)||(12935579-12935704)
chr6 (204-328)||(1149854-1149977)
chr6 (204-322)||(18257565-18257682)
chr6 (207-272)||(18504922-18504987)
chr6 (203-272)||(20741581-20741650)
chr6 (203-272)||(31470314-31470383)
chr6 (207-324)||(2322644-2322760)
chr6 (205-328)||(18505341-18505463)
chr6 (202-325)||(28472635-28472757)
chr6 (202-325)||(29859824-29859946)
chr6 (205-271)||(15827639-15827705)
chr6 (206-272)||(29033436-29033502)
chr6 (204-328)||(4811372-4811495)
chr6 (206-272)||(29035114-29035180)
chr6 (202-325)||(18296143-18296265)
chr6 (207-328)||(3835148-3835268)
chr6 (204-272)||(4811733-4811801)
chr6 (203-272)||(11276589-11276658)
chr6 (204-260)||(22534214-22534270)
[»] chr5 (39 HSPs)
chr5 (202-328)||(2865177-2865302)
chr5 (202-324)||(18183395-18183516)
chr5 (204-328)||(5819351-5819474)
chr5 (201-328)||(24362258-24362384)
chr5 (204-328)||(8647438-8647561)
chr5 (204-328)||(19359136-19359259)
chr5 (202-322)||(19359564-19359683)
chr5 (99-194)||(27056558-27056653)
chr5 (202-328)||(164613-164738)
chr5 (203-328)||(29455164-29455288)
chr5 (197-322)||(8647866-8647990)
chr5 (202-322)||(18182968-18183087)
chr5 (202-272)||(5818927-5818997)
chr5 (202-272)||(15372350-15372420)
chr5 (202-325)||(15708969-15709091)
chr5 (202-272)||(24331557-24331627)
chr5 (202-328)||(8460928-8461053)
chr5 (203-272)||(8461408-8461477)
chr5 (204-271)||(164191-164258)
chr5 (202-272)||(14215720-14215790)
chr5 (206-322)||(2864756-2864871)
chr5 (205-272)||(4222199-4222266)
chr5 (204-271)||(7349495-7349562)
chr5 (206-272)||(14215243-14215309)
chr5 (203-322)||(29454739-29454857)
chr5 (202-269)||(14464000-14464067)
chr5 (203-269)||(16018588-16018654)
chr5 (204-325)||(4219663-4219783)
chr5 (203-272)||(25000566-25000635)
chr5 (204-272)||(7348559-7348627)
chr5 (205-272)||(6018315-6018382)
chr5 (202-269)||(16019067-16019134)
chr5 (210-328)||(24361843-24361960)
chr5 (282-328)||(25000167-25000213)
chr5 (204-322)||(15709397-15709513)
chr5 (204-272)||(4623148-4623216)
chr5 (193-257)||(4967264-4967327)
chr5 (206-272)||(15371873-15371938)
chr5 (210-272)||(24325218-24325280)
[»] chr3 (47 HSPs)
chr3 (202-328)||(31779074-31779199)
chr3 (202-322)||(4275792-4275911)
chr3 (202-328)||(20840558-20840683)
chr3 (203-325)||(27393660-27393781)
chr3 (204-328)||(39555999-39556122)
chr3 (202-328)||(5136978-5137103)
chr3 (202-328)||(48452987-48453112)
chr3 (204-272)||(32535440-32535508)
chr3 (207-328)||(41046703-41046823)
chr3 (197-322)||(43973868-43973992)
chr3 (202-322)||(17464489-17464608)
chr3 (203-322)||(30098191-30098309)
chr3 (202-325)||(30104480-30104602)
chr3 (203-322)||(20840989-20841107)
chr3 (202-328)||(24300978-24301103)
chr3 (204-326)||(29801356-29801477)
chr3 (204-322)||(37727358-37727475)
chr3 (203-272)||(39555577-39555646)
chr3 (203-328)||(23644461-23644585)
chr3 (204-328)||(43973441-43973564)
chr3 (202-272)||(29801893-29801963)
chr3 (203-322)||(31778652-31778770)
chr3 (202-272)||(37222048-37222118)
chr3 (204-269)||(25853234-25853299)
chr3 (203-328)||(37726928-37727052)
chr3 (207-328)||(25612399-25612519)
chr3 (202-269)||(5137461-5137528)
chr3 (208-328)||(22425235-22425354)
chr3 (206-328)||(25853649-25853770)
chr3 (207-322)||(32534962-32535076)
chr3 (203-328)||(17464913-17465038)
chr3 (202-328)||(26837778-26837902)
chr3 (203-272)||(27394054-27394123)
chr3 (204-272)||(23644942-23645010)
chr3 (205-272)||(51473429-51473496)
chr3 (195-322)||(22424805-22424931)
chr3 (204-270)||(23228486-23228552)
chr3 (194-272)||(37220547-37220625)
chr3 (202-271)||(51474812-51474881)
chr3 (202-322)||(26837358-26837477)
chr3 (202-245)||(45965936-45965979)
chr3 (207-322)||(26274570-26274684)
chr3 (204-265)||(50116893-50116954)
chr3 (205-272)||(32697177-32697244)
chr3 (202-272)||(26275043-26275113)
chr3 (207-272)||(24300560-24300624)
chr3 (202-255)||(52375826-52375879)
[»] chr1 (37 HSPs)
chr1 (202-328)||(18984117-18984242)
chr1 (203-328)||(5540240-5540364)
chr1 (203-328)||(29869619-29869743)
chr1 (203-328)||(50970700-50970824)
chr1 (204-328)||(29306953-29307076)
chr1 (205-322)||(8678542-8678658)
chr1 (203-325)||(15646620-15646741)
chr1 (202-322)||(15173522-15173640)
chr1 (206-322)||(17433643-17433758)
chr1 (202-322)||(50970276-50970395)
chr1 (202-272)||(15646190-15646260)
chr1 (203-322)||(18984547-18984665)
chr1 (206-272)||(33144396-33144462)
chr1 (202-328)||(9018971-9019096)
chr1 (202-328)||(26859481-26859606)
chr1 (204-322)||(29307370-29307487)
chr1 (204-322)||(29870047-29870164)
chr1 (205-322)||(5539817-5539933)
chr1 (204-272)||(8679018-8679086)
chr1 (203-271)||(39154498-39154566)
chr1 (205-272)||(4636448-4636515)
chr1 (202-322)||(9019391-9019510)
chr1 (194-322)||(26859049-26859176)
chr1 (207-328)||(5963000-5963120)
chr1 (207-328)||(15173099-15173219)
chr1 (212-272)||(33143925-33143985)
chr1 (206-272)||(21856044-21856110)
chr1 (197-328)||(39154012-39154142)
chr1 (203-272)||(52268289-52268358)
chr1 (204-272)||(21856520-21856588)
chr1 (204-328)||(17433216-17433339)
chr1 (206-269)||(47826966-47827029)
chr1 (202-272)||(2733434-2733504)
chr1 (200-272)||(5962574-5962646)
chr1 (230-272)||(47827065-47827107)
chr1 (206-272)||(52269225-52269291)
chr1 (64-152)||(12850838-12850927)
[»] chr4 (48 HSPs)
chr4 (202-321)||(23494872-23494990)
chr4 (202-322)||(15523233-15523352)
chr4 (197-328)||(25937663-25937793)
chr4 (203-272)||(16318253-16318322)
chr4 (204-322)||(25447247-25447364)
chr4 (202-328)||(25447658-25447783)
chr4 (204-322)||(45082852-45082969)
chr4 (206-328)||(46193827-46193948)
chr4 (204-328)||(11153569-11153692)
chr4 (203-322)||(11153145-11153263)
chr4 (203-322)||(25938099-25938217)
chr4 (204-322)||(46193405-46193522)
chr4 (202-328)||(12234327-12234452)
chr4 (204-322)||(12234757-12234874)
chr4 (207-272)||(18751602-18751667)
chr4 (204-322)||(22434179-22434296)
chr4 (206-328)||(23494445-23494566)
chr4 (206-328)||(33109686-33109807)
chr4 (202-322)||(20470939-20471058)
chr4 (206-272)||(18763997-18764063)
chr4 (207-322)||(48526609-48526723)
chr4 (199-269)||(54995547-54995617)
chr4 (203-328)||(15523656-15523780)
chr4 (206-328)||(38962241-38962362)
chr4 (202-271)||(51021273-51021342)
chr4 (202-322)||(33109892-33110011)
chr4 (202-322)||(54995067-54995186)
chr4 (206-328)||(4219559-4219680)
chr4 (202-272)||(4220036-4220106)
chr4 (206-271)||(2118295-2118360)
chr4 (203-272)||(10258364-10258433)
chr4 (203-325)||(48526195-48526316)
chr4 (202-328)||(51020795-51020920)
chr4 (205-272)||(20958336-20958403)
chr4 (202-268)||(22434657-22434723)
chr4 (204-269)||(35363081-35363146)
chr4 (202-325)||(45082430-45082551)
chr4 (203-328)||(22170359-22170482)
chr4 (196-245)||(48293586-48293635)
chr4 (222-325)||(43243705-43243807)
chr4 (205-272)||(44890518-44890585)
chr4 (207-325)||(2118720-2118837)
chr4 (202-271)||(48708293-48708362)
chr4 (211-271)||(20957196-20957256)
chr4 (205-272)||(44892625-44892692)
chr4 (204-271)||(48295021-48295088)
chr4 (222-272)||(43281267-43281317)
chr4 (202-255)||(33689827-33689880)
[»] scaffold0951 (2 HSPs)
scaffold0951 (202-328)||(1665-1790)
scaffold0951 (202-322)||(2095-2214)
[»] scaffold0417 (2 HSPs)
scaffold0417 (193-322)||(11051-11179)
scaffold0417 (223-272)||(10640-10689)
[»] scaffold0432 (2 HSPs)
scaffold0432 (207-325)||(10297-10414)
scaffold0432 (207-267)||(9935-9995)
[»] scaffold0019 (1 HSPs)
scaffold0019 (202-328)||(134095-134220)
[»] scaffold0176 (2 HSPs)
scaffold0176 (204-272)||(19098-19166)
scaffold0176 (203-271)||(18834-18902)
[»] scaffold0007 (2 HSPs)
scaffold0007 (207-320)||(64735-64847)
scaffold0007 (203-328)||(64301-64425)
[»] scaffold1223 (2 HSPs)
scaffold1223 (206-328)||(755-875)
scaffold1223 (204-322)||(1169-1286)
[»] scaffold0113 (1 HSPs)
scaffold0113 (203-272)||(28720-28789)
[»] scaffold1585 (1 HSPs)
scaffold1585 (205-272)||(568-635)
[»] scaffold0057 (2 HSPs)
scaffold0057 (202-269)||(61026-61093)
scaffold0057 (207-269)||(61938-62000)
[»] scaffold0027 (2 HSPs)
scaffold0027 (202-272)||(42635-42705)
scaffold0027 (207-322)||(42172-42286)
[»] scaffold0076 (1 HSPs)
scaffold0076 (207-271)||(8487-8551)


Alignment Details
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 14747946 - 14747761
Alignment:
Q  19 gatcagagtgaatgtggtttgcatgcttcttcgcacaacatgtatctctaattccagaagagaac-ttcatttgagaataagggatggttcatctttaaa 117  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  14747946 gatcagagtgactgtggtttgcatgcttcttcgcacaacatgtgtctctaattccagaagagaaccttcatttgagaataagggatggttcacctttaaa 14747847  T
Q  118 acatgtttggtaagctcttttgagttgttgcttttgtttcttcgtcaaatatggtgtaaaaggcacttctaccccattatattgta 203  Q
     |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14747846 tcatgtttggtaagctcttttgagttgttgcttttatttcttcatcaaatatggtgtaaaaggcacttctaccccattatattgta 14747761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 203 - 322
Target Start/End: Complemental strand, 13225185 - 13225067
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattttt 302  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||        ||||||||  ||||| ||||||    
T  13225185 aggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcttgcccttttaaaacag-aacaaaacggtccttcaattatcattttt 13225087  T
Q  303 gttgcattttttgtcctacc 322  Q
    ||||||||||| ||||||||    
T  13225086 gttgcatttttcgtcctacc 13225067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 202 - 325
Target Start/End: Original strand, 41681132 - 41681254
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||        ||||||||  ||||| |||||    
T  41681132 taggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaacag-aacaaaacggtccttcaattatcatttt 41681230  T
Q  302 tgttgcattttttgtcctaccccc 325  Q
    |||||||||||| |||||||||||    
T  41681231 tgttgcatttttcgtcctaccccc 41681254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 202 - 328
Target Start/End: Complemental strand, 19176837 - 19176712
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| ||||||||||||||||  |||||||| ||||||||||||||||        ||||||||  ||||| |||||    
T  19176837 taggcttaattacacttttggtcctcgtgttttggcctactcacgtaactggtcctgcccttttaaaacag-aacaaaacggtccttcaattatcatttt 19176739  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    |||||||||||| ||||||||||||||    
T  19176738 tgttgcatttttcgtcctaccccccat 19176712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 197 - 328
Target Start/End: Original strand, 11656448 - 11656578
Alignment:
Q  197 tattgtaggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattata 296  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||| |        ||||||||  ||||      
T  11656448 tattttaggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcatgcccttttaaaactg-aacaaaacggtccttcaattacc 11656546  T
Q  297 atttttgttgcattttttgtcctaccccccat 328  Q
    ||||||||||||||||| ||||||||||||||    
T  11656547 atttttgttgcatttttcgtcctaccccccat 11656578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 202 - 272
Target Start/End: Original strand, 33742920 - 33742990
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||    
T  33742920 taggcttaattacacttttggtcctcgtgttttgacctactcacgaaactggtcttgcccttttaaaacag 33742990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 203 - 322
Target Start/End: Original strand, 44831246 - 44831364
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattttt 302  Q
    |||||||||||||||||||||||||  |||||||||||||||| ||| ||||| ||||||||||||||||        |||||||| |||||| ||||||    
T  44831246 aggcttaattacacttttggtcctcatgttttggcctactcacgaaattggtcctgcccttttaaaacag-aacaaaacggtccttccattatcattttt 44831344  T
Q  303 gttgcattttttgtcctacc 322  Q
    ||||||||||| ||||||||    
T  44831345 gttgcatttttcgtcctacc 44831364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 202 - 318
Target Start/End: Original strand, 19176288 - 19176403
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||| ||| ||||||||||||||||        ||||||||  ||||| |||||    
T  19176288 taggcttaattacacttttggtcctcgtgttttggcctactcacgaaactagtcctgcccttttaaaacag-aacaaaacggtccttcaattatcatttt 19176386  T
Q  302 tgttgcattttttgtcc 318  Q
    |||||||||||| ||||    
T  19176387 tgttgcatttttcgtcc 19176403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 9930203 - 9930079
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattttt 302  Q
    ||||||||||||||||||||||||||  ||||||||||||||| ||||||||| ||||||||||||| ||         |||||||  | ||| ||||||    
T  9930203 aggcttaattacacttttggtcctcgtattttggcctactcacgaaactggtcctgcccttttaaaatagaacaaaat-ggtccttcaactatcattttt 9930105  T
Q  303 gttgcattttttgtcctaccccccat 328  Q
    ||||||||||| ||||||||||||||    
T  9930104 gttgcatttttcgtcctaccccccat 9930079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 202 - 271
Target Start/End: Complemental strand, 34541095 - 34541026
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaaca 271  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||| |||||||||||    
T  34541095 taggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgctcttttaaaaca 34541026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 204 - 322
Target Start/End: Complemental strand, 41681679 - 41681562
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    ||||||||||||||||||||||||| ||||||||||| |||| ||||||||| | ||||||||||||||        ||||||||  ||||| |||||||    
T  41681679 ggcttaattacacttttggtcctcgtgttttggcctaatcacgaaactggtcctacccttttaaaacag-aacaaaacggtccttcaattatcatttttg 41681581  T
Q  304 ttgcattttttgtcctacc 322  Q
    |||||||||| ||||||||    
T  41681580 ttgcatttttcgtcctacc 41681562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 205 - 322
Target Start/End: Complemental strand, 31133764 - 31133648
Alignment:
Q  205 gcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgt 304  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||| || ||||||||||||||||        ||||||||  ||||| ||||||||    
T  31133764 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactgatcctgcccttttaaaacag-aacaaaacggtccttcaattattatttttgt 31133666  T
Q  305 tgcattttttgtcctacc 322  Q
    ||||||||| ||| ||||    
T  31133665 tgcatttttcgtcatacc 31133648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 203 - 322
Target Start/End: Complemental strand, 11657003 - 11656885
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattttt 302  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||  | |||||||||||||         |||||||  ||||| ||||||    
T  11657003 aggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcccggccttttaaaacagaacaaaat-ggtccttcaattatcattttt 11656905  T
Q  303 gttgcattttttgtcctacc 322  Q
    ||||||||||| ||||||||    
T  11656904 gttgcatttttcgtcctacc 11656885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 202 - 326
Target Start/End: Original strand, 12571861 - 12571984
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||  | ||||||||||||||        ||||| ||  ||||| |||||    
T  12571861 taggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggttctacccttttaaaacag-aacaaaacggtcattcaattatcatttt 12571959  T
Q  302 tgttgcattttttgtcctacccccc 326  Q
    |||||||||||| |||||| |||||    
T  12571960 tgttgcatttttcgtcctaaccccc 12571984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 207 - 323
Target Start/End: Original strand, 33328161 - 33328276
Alignment:
Q  207 ttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgttg 306  Q
    |||||||||||||||||||||| |||||||||||||||| |||||| || ||||||||||||||||        ||||||||  | ||| ||||||||||    
T  33328161 ttaattacacttttggtcctcgtgttttggcctactcacgaaactgatcatgcccttttaaaacag-aacaaaacggtccttcaagtatcatttttgttg 33328259  T
Q  307 cattttttgtcctaccc 323  Q
    ||||||| |||||||||    
T  33328260 catttttcgtcctaccc 33328276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 207 - 322
Target Start/End: Original strand, 9928912 - 9929026
Alignment:
Q  207 ttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgttg 306  Q
    |||||||||||||||||||||| ||||||  |||||||| ||||||||| ||||||||||||||||        ||||||||  ||||| ||||||||||    
T  9928912 ttaattacacttttggtcctcgtgttttgatctactcacgaaactggtcctgcccttttaaaacag-aacaaaacggtccttcaattatcatttttgttg 9929010  T
Q  307 cattttttgtcctacc 322  Q
    ||||||| ||||||||    
T  9929011 catttttcgtcctacc 9929026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 30686603 - 30686541
Alignment:
Q  133 tcttttgagttgttgcttttgtttcttcgtcaaatatggtgtaaaaggcacttctaccccatt 195  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||    
T  30686603 tcttttgagttgtttcttttgtttcttcgtcaagtatggtgtaaaaggcacttctgccccatt 30686541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 202 - 328
Target Start/End: Original strand, 31133218 - 31133343
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| |||||| ||||||||| |||||||||  ||||||||||||||         | ||||||  | ||| |||||    
T  31133218 taggcttaattacacttttggtcctcgtgttttgccctactcacgaaactggtcccgcccttttaaaaca-aaacaaaacagtccttcaagtatcatttt 31133316  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    |||||||||||| ||||||||||||||    
T  31133317 tgttgcatttttcgtcctaccccccat 31133343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 195 - 272
Target Start/End: Complemental strand, 11337076 - 11336999
Alignment:
Q  195 tatattgtaggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||||||||||||||||||||||| ||| |||||||| ||||||| ||| |||||  |||||||||||||||    
T  11337076 tatattgtaggcttaattacacttttggtcttcgtgttttggcttactcacgaaattggtcccgcccttttaaaacag 11336999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 328
Target Start/End: Complemental strand, 44831792 - 44831667
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    |||||||||| |||||||||||||||| |||||||| ||||||| ||||||||| ||| ||||||||||||        ||||  ||  ||||| |||||    
T  44831792 taggcttaataacacttttggtcctcgtgttttggcatactcacgaaactggtcctgctcttttaaaacag-aacaaaacggttattcaattatcatttt 44831694  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    |||||||||||| ||||||||||||||    
T  44831693 tgttgcatttttggtcctaccccccat 44831667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 9178180 - 9178112
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||| || |||||| |||||||||    
T  9178180 ggcttaattacacttttggtcctcgtgttttggcctactcacgaaactgatcatgccctcttaaaacag 9178112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 207 - 322
Target Start/End: Complemental strand, 12572393 - 12572279
Alignment:
Q  207 ttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgttg 306  Q
    |||||||||||||||||||||| ||||||| |||||||| ||||| ||| ||| ||||||||||||        ||||||||  ||||| ||||||||||    
T  12572393 ttaattacacttttggtcctcgtgttttggtctactcacgaaactagtcatgctcttttaaaacag-aacaaaacggtccttcaattatcatttttgttg 12572295  T
Q  307 cattttttgtcctacc 322  Q
    ||||||| ||||||||    
T  12572294 catttttcgtcctacc 12572279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 13224645 - 13224708
Alignment:
Q  208 taattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||||||||| ||| |||||||||||||||| ||||||||| ||||||||||||||||    
T  13224645 taattacacttttggtcttcgtgttttggcctactcacgaaactggtc-tgcccttttaaaacag 13224708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 206 - 328
Target Start/End: Complemental strand, 33328683 - 33328562
Alignment:
Q  206 cttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgtt 305  Q
    |||||||| |||||||||||||| ||||| |||||||||| ||||| ||| ||| |||||||||||         ||||||||  ||||| |||||||||    
T  33328683 cttaattagacttttggtcctcgtgttttagcctactcacgaaactagtcatgctcttttaaaaca-taacaaaacggtccttcaattatcatttttgtt 33328585  T
Q  306 gcattttttgtcctaccccccat 328  Q
    |||||||| |||| ||| |||||    
T  33328584 gcatttttcgtcccacctcccat 33328562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 8074097 - 8074028
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||| ||| |||||||||||||| ||||||||||| |||| ||| || || || |||||||||||||    
T  8074097 aggcttagttatacttttggtcctcgtgttttggcctattcacgaaaatgatcatgtccttttaaaacag 8074028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 4629794 - 4629862
Alignment:
Q  201 gtaggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaa 269  Q
    |||||||||||| |||||||  | |||| |||||||| || |||| ||||||||| |||||||||||||    
T  4629794 gtaggcttaattgcacttttaattctcgtgttttggcatattcacgaaactggtcctgcccttttaaaa 4629862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 237
Target Start/End: Original strand, 9177665 - 9177700
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggc 237  Q
    ||||||||||||||||||||||||||| ||||||||    
T  9177665 taggcttaattacacttttggtcctcgtgttttggc 9177700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 228
Target Start/End: Original strand, 10046659 - 10046689
Alignment:
Q  198 attgtaggcttaattacacttttggtcctcg 228  Q
    |||||||||||||||||||||||||||||||    
T  10046659 attgtaggcttaattacacttttggtcctcg 10046689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 10919732 - 10919686
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaa 249  Q
    ||||||||||| |||||||||||||| |||||| |||||||| ||||    
T  10919732 aggcttaattatacttttggtcctcgtgttttgacctactcataaaa 10919686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 4630328 - 4630263
Alignment:
Q  207 ttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||||||| || ||| ||||||| |||||||| ||| ||||| |||  |||||||||||    
T  4630328 ttaattacacttttgatcatcgtgttttgggctactcacgaaattggtcctgcatttttaaaacag 4630263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 30686769 - 30686728
Alignment:
Q  154 tttcttcgtcaaatatggtgtaaaaggcacttctaccccatt 195  Q
    ||||||| |||| ||||||||||||||||||||| |||||||    
T  30686769 tttcttcatcaagtatggtgtaaaaggcacttctgccccatt 30686728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 328
Target Start/End: Complemental strand, 33743378 - 33743341
Alignment:
Q  291 attataatttttgttgcattttttgtcctaccccccat 328  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  33743378 attatcatttttgttgcatttttcgtcctaccccccat 33743341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 35427360 - 35427308
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggt 254  Q
    |||||||||||||||||||||||||||  ||||| || |||||| ||| ||||    
T  35427360 taggcttaattacacttttggtcctcgcattttgaccaactcacgaaaatggt 35427308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 202 - 328
Target Start/End: Original strand, 4791 - 4916
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||        ||||||||  ||||| |||||    
T  4791 taggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcatgcccttttaaaacag-aacaaaacggtccttcaattatcatttt 4889  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    |||||||||||| ||||||||||||||    
T  4890 tgttgcatttttcgtcctaccccccat 4916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 206 - 272
Target Start/End: Complemental strand, 5334 - 5268
Alignment:
Q  206 cttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||||||||||||||| ||||||||||| |||| |||||||||||| |||||||||||||    
T  5334 cttaattacacttttggtcctcgtgttttggcctagtcacgaaactggtcttgtccttttaaaacag 5268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 202 - 328
Target Start/End: Original strand, 19830418 - 19830543
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    |||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||        ||||||||  ||||| |||||    
T  19830418 taggtttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcttgcccttttaaaacag-aacaaaacggtccttcaattatcatttt 19830516  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    |||||||||||| ||||||||||||||    
T  19830517 tgttgcatttttcgtcctaccccccat 19830543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 197 - 322
Target Start/End: Complemental strand, 38859193 - 38859069
Alignment:
Q  197 tattgtaggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattata 296  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||| ||| ||||| ||||||||||||||||        |||||||| ||||||     
T  38859193 tattttaggcttaattacacttttggtcctcgtgttttggcctactcacgaaattggtcctgcccttttaaaacag-aacaaaacggtccttccattatc 38859095  T
Q  297 atttttgttgcattttttgtcctacc 322  Q
    ||||||||||||||||| ||||||||    
T  38859094 atttttgttgcatttttcgtcctacc 38859069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 204 - 328
Target Start/End: Original strand, 19590525 - 19590648
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||        ||||||||  ||||| |||||||    
T  19590525 ggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaacag-aacaaaacggtccttcaattatcatttttg 19590623  T
Q  304 ttgcattttttgtcctaccccccat 328  Q
    ||||||||||  |||||||||||||    
T  19590624 ttgcatttttcatcctaccccccat 19590648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 196 - 322
Target Start/End: Complemental strand, 19591078 - 19590953
Alignment:
Q  196 atattgtaggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattat 295  Q
    ||||| |||||||||||||||||||||| |||| |||||||||||||||| ||||||||| ||||||||||||||||        ||||||||  |||||    
T  19591078 atattttaggcttaattacacttttggtactcgtgttttggcctactcacgaaactggtcctgcccttttaaaacag-aacaaaacggtccttcaattat 19590980  T
Q  296 aatttttgttgcattttttgtcctacc 322  Q
     ||||||||||||||||| ||||||||    
T  19590979 catttttgttgcatttttcgtcctacc 19590953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 37786766 - 37786890
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattttt 302  Q
    |||||||||||||||||||||||||| ||||||||||||| || ||||||||| |||||||||||||||         ||||||||  ||||| ||||||    
T  37786766 aggcttaattacacttttggtcctcgtgttttggcctacttacgaaactggtcctgcccttttaaaaca-taacaaaacggtccttcaattatcattttt 37786864  T
Q  303 gttgcattttttgtcctaccccccat 328  Q
    ||||||||||| ||||||||||||||    
T  37786865 gttgcatttttcgtcctaccccccat 37786890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 207 - 328
Target Start/End: Complemental strand, 29100393 - 29100273
Alignment:
Q  207 ttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgttg 306  Q
    |||||||||||||||||||||| ||||||| |||||||||||| ||||| ||||||||||||||||        ||||| ||  ||||| ||||||||||    
T  29100393 ttaattacacttttggtcctcgtgttttggtctactcacaaaattggtcctgcccttttaaaacag-aacaaaacggtctttcaattatcatttttgttg 29100295  T
Q  307 cattttttgtcctaccccccat 328  Q
    ||||||||||||||||||||||    
T  29100294 cattttttgtcctaccccccat 29100273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 202 - 328
Target Start/End: Complemental strand, 35289448 - 35289323
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    |||||||||||||||||||| |||||| |||||||||||||||| ||||||||| ||||||||||||||||        ||||||||  ||||| |||||    
T  35289448 taggcttaattacacttttgatcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaacag-aacaaaacggtccttcaattatcatttt 35289350  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
     ||||||||||| ||| ||||||||||    
T  35289349 ggttgcatttttcgtcataccccccat 35289323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 19830965 - 19830897
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaaca 271  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||    
T  19830965 aggcttaattacacttttggtcctcgtgttttggcctactcacaaaactggtcctgtccttttaaaaca 19830897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 204 - 328
Target Start/End: Complemental strand, 32005159 - 32005036
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    ||||||||||||||||||||||||  |||||||| ||||||| ||||||||| ||||||||||||| ||        ||||||||| ||||| |||||||    
T  32005159 ggcttaattacacttttggtcctcatgttttggcatactcacgaaactggtcatgcccttttaaaatag-aacaaaacggtcctttaattatcatttttg 32005061  T
Q  304 ttgcattttttgtcctaccccccat 328  Q
    |||||||||| ||||||| ||||||    
T  32005060 ttgcatttttcgtcctactccccat 32005036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 202 - 272
Target Start/End: Original strand, 34533789 - 34533859
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||| ||||||||||||    
T  34533789 taggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcatgctcttttaaaacag 34533859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 328
Target Start/End: Complemental strand, 34534339 - 34534213
Alignment:
Q  201 gtaggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattt 300  Q
    ||||||||||||| ||||||||| |||| |||||||||||||||| |||||| || ||||| ||||||||||        ||||||||  ||||| ||||    
T  34534339 gtaggcttaattatacttttggttctcgtgttttggcctactcacgaaactgatcctgcccatttaaaacag-aacaaaacggtccttcaattatcattt 34534241  T
Q  301 ttgttgcattttttgtcctaccccccat 328  Q
    ||||||||||||| ||||||||||||||    
T  34534240 ttgttgcatttttcgtcctaccccccat 34534213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 202 - 328
Target Start/End: Complemental strand, 2659387 - 2659262
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    |||||||||||||| |||||||||||| ||||||||||| |||  ||||||||||||||||||||||||||        ||||| ||  ||||| |||||    
T  2659387 taggcttaattacaattttggtcctcgcgttttggcctattcatgaaactggtcttgcccttttaaaacag-aacaaaacggtcattcaattatcatttt 2659289  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    ||||||||||||  |||||||||||||    
T  2659288 tgttgcatttttcatcctaccccccat 2659262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 38858642 - 38858766
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattttt 302  Q
    ||||||||| |||||||||||||||| |||||||| ||||||| ||||||||| ||| ||||||||||||        ||||| ||  ||||| ||||||    
T  38858642 aggcttaataacacttttggtcctcgtgttttggcatactcacgaaactggtcctgctcttttaaaacag-aacaaaacggtcattcaattatcattttt 38858740  T
Q  303 gttgcattttttgtcctaccccccat 328  Q
    ||||||||||| ||||||||||||||    
T  38858741 gttgcatttttggtcctaccccccat 38858766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 202 - 269
Target Start/End: Original strand, 2658837 - 2658904
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaa 269  Q
    ||||||||||||||||||| ||||||| |||||||||||||||| ||||||||| |||||||||||||    
T  2658837 taggcttaattacactttttgtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaa 2658904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 202 - 272
Target Start/End: Original strand, 32004612 - 32004682
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||| || || ||||||||||||||||    
T  32004612 taggcttaattacacttttggtcctcgtgttttggcctactcacgaaattgatcctgcccttttaaaacag 32004682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 204 - 321
Target Start/End: Original strand, 35288903 - 35289019
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    ||||||||||||||||||||| |||  ||||||||||||||| ||||||||| ||||||||||||||||         |||||||  ||||| |||||||    
T  35288903 ggcttaattacacttttggtcatcgtattttggcctactcacgaaactggtcctgcccttttaaaacagaacaaaat-ggtccttcaattatcatttttg 35289001  T
Q  304 ttgcattttttgtcctac 321  Q
    |||||||||| |||||||    
T  35289002 ttgcatttttcgtcctac 35289019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 197 - 322
Target Start/End: Complemental strand, 37787319 - 37787195
Alignment:
Q  197 tattgtaggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattata 296  Q
    |||| |||||||||||| |||||||||||||| |||||||||||||||| ||||||||| ||| |||||||| |||        |||| |||  |||||     
T  37787319 tattttaggcttaattatacttttggtcctcgtgttttggcctactcacgaaactggtcctgctcttttaaatcag-aacaaaacggttcttcaattatc 37787221  T
Q  297 atttttgttgcattttttgtcctacc 322  Q
    ||||||||||||||||| ||||||||    
T  37787220 atttttgttgcatttttcgtcctacc 37787195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 202 - 272
Target Start/End: Complemental strand, 4478247 - 4478177
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||| |||| |||||||||| |||||| |||||||||||||||| ||||||||| ||||||||||||||||    
T  4478247 taggtttaagtacacttttgatcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaacag 4478177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 202 - 272
Target Start/End: Original strand, 38160949 - 38161019
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||| |  || ||||||||||||||||    
T  38160949 taggcttaattacacttttggtcctcgggttttggcctactcacgaaaataatcctgcccttttaaaacag 38161019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 207 - 328
Target Start/End: Original strand, 4641443 - 4641563
Alignment:
Q  207 ttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgttg 306  Q
    |||||||||||||||||||||| |||||||| ||||||| ||||||||| ||| ||||| |||||         ||||| ||  ||||| ||||||||||    
T  4641443 ttaattacacttttggtcctcgtgttttggcttactcacgaaactggtcctgctcttttgaaaca-taacaaaacggtcattcaattatcatttttgttg 4641541  T
Q  307 cattttttgtcctaccccccat 328  Q
    ||||||| ||||||||||||||    
T  4641542 catttttcgtcctaccccccat 4641563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 322
Target Start/End: Original strand, 23952728 - 23952848
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttg-gcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattt 300  Q
    ||||||||||||||||||||||||||| ||||||  ||||||||| ||| ||||| ||||||||||||||||        ||||||||  ||||| ||||    
T  23952728 taggcttaattacacttttggtcctcgtgttttgaccctactcacgaaattggtcatgcccttttaaaacag-aacaaaacggtccttcaattatcattt 23952826  T
Q  301 ttgttgcattttttgtcctacc 322  Q
    | ||||||||||| ||||||||    
T  23952827 tggttgcatttttcgtcctacc 23952848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 322
Target Start/End: Original strand, 29099863 - 29099967
Alignment:
Q  217 ttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgttgcattttttgt 316  Q
    |||||||||||| |||||||||||||||| |||||| || ||||||||||||||||        ||||||||  ||||| ||||||||||||||||| ||    
T  29099863 ttttggtcctcgtgttttggcctactcacgaaactgatcctgcccttttaaaacag-aacaaaacggtccttcaattatcatttttgttgcatttttcgt 29099961  T
Q  317 cctacc 322  Q
    ||||||    
T  29099962 cctacc 29099967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 328
Target Start/End: Original strand, 28583437 - 28583562
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| |||||||||||||||  | | ||||  |||||||||||||||         | ||||||  ||||| |||||    
T  28583437 taggcttaattacacttttggtcctcgtgttttggcctactcatgagattggttctgcccttttaaaaca-taataaaactgtccttcaattatcatttt 28583535  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    | |||||||||| ||||||||||||||    
T  28583536 tattgcatttttcgtcctaccccccat 28583562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 4641983 - 4641921
Alignment:
Q  207 ttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||||||||||||||| ||||||||||||||||   ||||||| || |||||||||||||    
T  4641983 ttaattacacttttggtcctcgtgttttggcctactcac---actggtcctgtccttttaaaacag 4641921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 328
Target Start/End: Complemental strand, 23953268 - 23953151
Alignment:
Q  210 attacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgttgcat 309  Q
    |||||| |||||||||||| ||||||  |||||||| |||||||||  ||||||| |||||||        ||||||||  ||||| |||||||||||||    
T  23953268 attacatttttggtcctcgtgttttgatctactcacgaaactggtcccgccctttcaaaacag-aacaaaacggtccttcaattatcatttttgttgcat 23953170  T
Q  310 tttttgtcctaccccccat 328  Q
    |||| ||| ||||||||||    
T  23953169 ttttcgtcataccccccat 23953151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 28584466 - 28584399
Alignment:
Q  205 gcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||||||||| ||||||| | ||||||||| |||| ||| ||||| || |||||||||||||    
T  28584466 gcttaattacacttttcgtcctcgtgctttggcctattcacgaaattggtcatgtccttttaaaacag 28584399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 202 - 328
Target Start/End: Original strand, 22374318 - 22374443
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||        ||||||||  ||||| |||||    
T  22374318 taggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcatgcccttttaaaacag-aacaaaacggtccttcaattatcatttt 22374416  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    |||||||||||| ||||||||||||||    
T  22374417 tgttgcatttttcgtcctaccccccat 22374443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 204 - 328
Target Start/End: Original strand, 28616613 - 28616736
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||        ||||||||  ||||| |||||||    
T  28616613 ggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcttgcccttttaaaacag-aacaaaacggtccttcaattatcatttttg 28616711  T
Q  304 ttgcattttttgtcctaccccccat 328  Q
    ||||| |||| ||||||||||||||    
T  28616712 ttgcaattttcgtcctaccccccat 28616736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 200 - 322
Target Start/End: Complemental strand, 22374874 - 22374753
Alignment:
Q  200 tgtaggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatt 299  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||        ||||||||  ||||| |||    
T  22374874 tgtaggcttaattacacttttggtcctcgtgttttggcctactcacgaaattggtcttgcccttttaaaacag-aacaaaacggtccttcaattatcatt 22374776  T
Q  300 tttgttgcattttttgtcctacc 322  Q
    |||||||||||||| ||||||||    
T  22374775 tttgttgcatttttcgtcctacc 22374753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 202 - 328
Target Start/End: Complemental strand, 26538626 - 26538501
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||| |||||||||        ||||||||  ||||| |||||    
T  26538626 taggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgccctcttaaaacag-aacaaaacggtccttcaattatcatttt 26538528  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    |||||||||||| ||||||||||||||    
T  26538527 tgttgcatttttcgtcctaccccccat 26538501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 40027139 - 40027263
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattttt 302  Q
    |||||||||||||||||||||| ||| |||||||||||||||| ||||||||| ||||||||||||||||        ||||||||  ||||| ||||||    
T  40027139 aggcttaattacacttttggtcatcgtgttttggcctactcacgaaactggtcatgcccttttaaaacag-aacaaaacggtccttcaattatcattttt 40027237  T
Q  303 gttgcattttttgtcctaccccccat 328  Q
    ||||||||||||||||||||| ||||    
T  40027238 gttgcattttttgtcctaccctccat 40027263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 202 - 328
Target Start/End: Original strand, 11090519 - 11090644
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    |||| |||||||||||||||||||||| |||||||||||||||| ||||| ||| ||||||||||||||||        ||||||||  ||||| |||||    
T  11090519 taggtttaattacacttttggtcctcgtgttttggcctactcacgaaacttgtcctgcccttttaaaacag-aacaaaacggtccttcaattatcatttt 11090617  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    |||||||||||| ||||||||||||||    
T  11090618 tgttgcatttttcgtcctaccccccat 11090644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 26538096 - 26538220
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattttt 302  Q
    |||||||||||||||||||||||||| |||||||| ||||||| ||||||||  ||||||||||||||||        ||||||||  ||||| ||||||    
T  26538096 aggcttaattacacttttggtcctcgtgttttggcttactcacgaaactggttctgcccttttaaaacag-aacaaagcggtccttcaattatcattttt 26538194  T
Q  303 gttgcattttttgtcctaccccccat 328  Q
    ||||||||||| ||||||||||||||    
T  26538195 gttgcatttttcgtcctaccccccat 26538220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 202 - 272
Target Start/End: Complemental strand, 11091067 - 11090997
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||    
T  11091067 taggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcatgcccttttaaaacag 11090997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 202 - 328
Target Start/End: Original strand, 239351 - 239475
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||| ||| |||||||||||||||| ||||||||| || |||||||||||||        ||||||||  ||||| |||||    
T  239351 taggcttaattacacttttggtcatcgtgttttggcctactcacgaaactggtcctg-ccttttaaaacag-aacaaaacggtccttcaattatcatttt 239448  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    |||||||||||| ||||||||||||||    
T  239449 tgttgcatttttcgtcctaccccccat 239475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 202 - 328
Target Start/End: Original strand, 1978106 - 1978231
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    |||||||||||||| |||||||||| | |||||||||||||||| ||||||||| ||||||||||||||||        ||||||||  ||||| |||||    
T  1978106 taggcttaattacatttttggtccttgtgttttggcctactcacgaaactggtcctgcccttttaaaacag-aacaaaacggtccttcaattatcatttt 1978204  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    ||||||||||||||||||  |||||||    
T  1978205 tgttgcattttttgtcctgtcccccat 1978231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 40815347 - 40815412
Alignment:
Q  206 cttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaaca 271  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  40815347 cttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcttgcccttttaaaaca 40815412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 202 - 328
Target Start/End: Complemental strand, 40815892 - 40815767
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    |||| |||||||||||||||||||||| |||||||||||||||| ||||||||  ||||||||||||||||        ||| ||||  ||||| |||||    
T  40815892 taggtttaattacacttttggtcctcgtgttttggcctactcacgaaactggtaatgcccttttaaaacag-aacaaaacggcccttcaattatcatttt 40815794  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    |||||||||||| ||||||||||||||    
T  40815793 tgttgcatttttcgtcctaccccccat 40815767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 20444748 - 20444872
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattttt 302  Q
    |||||||||||||||||||||||||| ||||||||| |||||| ||||||||| ||||||||||||||||        ||||||||   |||| ||||||    
T  20444748 aggcttaattacacttttggtcctcgtgttttggccaactcacgaaactggtcctgcccttttaaaacag-aacaaaacggtccttcagttatcattttt 20444846  T
Q  303 gttgcattttttgtcctaccccccat 328  Q
    |||||| |||| ||||||||||||||    
T  20444847 gttgcagttttcgtcctaccccccat 20444872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 202 - 322
Target Start/End: Complemental strand, 1978656 - 1978537
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||| | |||||||||||||||| ||| ||||| ||||||||||||||||        | ||||||  ||||| |||||    
T  1978656 taggcttaattacacttttggtccttgtgttttggcctactcacgaaattggtcctgcccttttaaaacag-aacaaaacagtccttcaattatcatttt 1978558  T
Q  302 tgttgcattttttgtcctacc 322  Q
    |||||||||||||||||||||    
T  1978557 tgttgcattttttgtcctacc 1978537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 203 - 322
Target Start/End: Original strand, 18450829 - 18450947
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattttt 302  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||  |||||||||||||||        ||||||||  ||||| ||||||    
T  18450829 aggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtccagcccttttaaaacag-aacaaaacggtccttcaattatcattttt 18450927  T
Q  303 gttgcattttttgtcctacc 322  Q
     |||||||||| ||||||||    
T  18450928 tttgcatttttagtcctacc 18450947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 202 - 272
Target Start/End: Complemental strand, 18451378 - 18451308
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||||||||||||||||||| ||||||||||||| || ||||||||| ||||||||||||||||    
T  18451378 taggcttaattacacttttggtcctcgtgttttggcctacttacgaaactggtcctgcccttttaaaacag 18451308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 202 - 272
Target Start/End: Complemental strand, 20440578 - 20440508
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||||||||||||||||||| ||||||||| |||||| ||||||||| ||||||||||||||||    
T  20440578 taggcttaattacacttttggtcctcgtgttttggccaactcacgaaactggtcctgcccttttaaaacag 20440508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 207 - 328
Target Start/End: Original strand, 14432145 - 14432265
Alignment:
Q  207 ttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgttg 306  Q
    |||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||| |         ||||||||  | ||| ||||||||||    
T  14432145 ttaattacacttttggtcctcgtgttttggcctactcatgaaactggtcttgcccttttaaaata-taacaaaacggtccttcaactatcatttttgttg 14432243  T
Q  307 cattttttgtcctaccccccat 328  Q
    ||||||| ||||||||||||||    
T  14432244 catttttggtcctaccccccat 14432265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 204 - 328
Target Start/End: Original strand, 43058333 - 43058456
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    |||||||||||||||||| |||||| ||||||||| |||||| ||||||||| |||| |||||||||||        ||||||||  ||||| |||||||    
T  43058333 ggcttaattacacttttgatcctcgtgttttggccaactcactaaactggtcctgcctttttaaaacag-aacaaaacggtccttcaattatcatttttg 43058431  T
Q  304 ttgcattttttgtcctaccccccat 328  Q
    |||||||||| || |||||||||||    
T  43058432 ttgcatttttcgttctaccccccat 43058456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 207 - 322
Target Start/End: Complemental strand, 40027682 - 40027568
Alignment:
Q  207 ttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgttg 306  Q
    |||||||||||||||||||||| |||||||||||||||| ||| ||||| ||||||||||||||||        ||||| ||  ||||| ||||||||||    
T  40027682 ttaattacacttttggtcctcgtgttttggcctactcacgaaattggtcctgcccttttaaaacag-aacaaaacggtctttcaattatcatttttgttg 40027584  T
Q  307 cattttttgtcctacc 322  Q
    ||||||| ||||||||    
T  40027583 catttttcgtcctacc 40027568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 202 - 272
Target Start/End: Complemental strand, 43058879 - 43058809
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||||||||||||| |||||| |||||||||||||||| ||||||||| ||| ||||||||||||    
T  43058879 taggcttaattacacttttgatcctcgtgttttggcctactcacgaaactggtcctgctcttttaaaacag 43058809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 28617160 - 28617091
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||  || |||||||||||||    
T  28617160 aggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggttctgtccttttaaaacag 28617091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 322
Target Start/End: Complemental strand, 28847251 - 28847123
Alignment:
Q  193 attatattgtaggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcat 292  Q
    |||||| | |||||||||||||| |||||||||||| ||||||| |||||||| ||||||||| ||| |||||||||||         ||||||||  ||    
T  28847251 attataatataggcttaattacatttttggtcctcgtgttttggtctactcacgaaactggtcctgctcttttaaaaca-aaacaaaacggtccttcaat 28847153  T
Q  293 tataatttttgttgcattttttgtcctacc 322  Q
    ||| ||||||||||||||||| ||||||||    
T  28847152 tatcatttttgttgcatttttcgtcctacc 28847123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 204 - 328
Target Start/End: Original strand, 35779708 - 35779831
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    ||||||||||||||||||||||||| |||||| | ||||||| ||| ||||| |||| |||||||||||          ||||||  ||||| |||||||    
T  35779708 ggcttaattacacttttggtcctcgtgttttgacatactcacgaaaatggtcctgccattttaaaacagaacaaaat-tgtccttcaattatcatttttg 35779806  T
Q  304 ttgcattttttgtcctaccccccat 328  Q
    |||||||||||||||||||||||||    
T  35779807 ttgcattttttgtcctaccccccat 35779831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 196 - 272
Target Start/End: Complemental strand, 35781216 - 35781140
Alignment:
Q  196 atattgtaggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||| || ||||||||||||||||| |||||| |||||||||||||||| ||| ||||| ||||||||||||||||    
T  35781216 atattataagcttaattacacttttgatcctcgtgttttggcctactcacgaaaatggtcatgcccttttaaaacag 35781140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 239896 - 239829
Alignment:
Q  205 gcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||| |||||||||||||||||| |||||||||||||||| ||| ||||| ||||||||||||||||    
T  239896 gcttagttacacttttggtcctcgtgttttggcctactcacgaaattggtcctgcccttttaaaacag 239829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 322
Target Start/End: Complemental strand, 7446893 - 7446774
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    |||||||||||||| ||||| |||||| |||||| | ||||||| ||||||||| ||||||||||||||||        ||||||||  ||||| |||||    
T  7446893 taggcttaattacatttttgatcctcgtgttttgccttactcacgaaactggtcctgcccttttaaaacag-aacaaaacggtccttcaattatcatttt 7446795  T
Q  302 tgttgcattttttgtcctacc 322  Q
    |||||||||||| ||||||||    
T  7446794 tgttgcatttttcgtcctacc 7446774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 210 - 325
Target Start/End: Original strand, 3025472 - 3025586
Alignment:
Q  210 attacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgttgcat 309  Q
    |||||| |||||||||||| |||||||||||||||| ||||||||| ||| ||||||||||||        ||||||||  | ||| |||||||||||||    
T  3025472 attacatttttggtcctcgtgttttggcctactcacgaaactggtcctgctcttttaaaacag-aacaaaacggtccttcaagtatcatttttgttgcat 3025570  T
Q  310 tttttgtcctaccccc 325  Q
    |||| |||||||||||    
T  3025571 ttttcgtcctaccccc 3025586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 272
Target Start/End: Complemental strand, 14432684 - 14432618
Alignment:
Q  206 cttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||| |||||||||||| |||||||||||||||  ||||||||| |||| |||||||||||    
T  14432684 cttaattacatttttggtcctcgtgttttggcctactcatgaaactggtcatgccattttaaaacag 14432618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 7446341 - 7446410
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||||||||||| |||||| ||||||| |||||||  ||| ||||| ||||||||||||||||    
T  7446341 aggcttaattacacttttgatcctcgtgttttggtctactcatgaaattggtcctgcccttttaaaacag 7446410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 8425358 - 8425423
Alignment:
Q  207 ttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||||||||||||| | |||||||||||||||| ||| ||||||| || |||||||||||    
T  8425358 ttaattacacttttggtccttgtgttttggcctactcacgaaattggtcttacctttttaaaacag 8425423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 322
Target Start/End: Complemental strand, 3026006 - 3025891
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    |||||||||||| |||||||||||| |||||||| ||||||| ||| ||||  |||||||||||||||         ||||||||  ||||| |||||||    
T  3026006 ggcttaattaca-ttttggtcctcgtgttttggcttactcacgaaattggttctgcccttttaaaaca--aacaaaacggtccttcaattattatttttg 3025910  T
Q  304 ttgcattttttgtcctacc 322  Q
    |||||||||| ||||||||    
T  3025909 ttgcatttttcgtcctacc 3025891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 8972239 - 8972305
Alignment:
Q  206 cttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||||||||||||||| |||||||| | ||||| ||| ||||| |||||||| |||||||    
T  8972239 cttaattacacttttggtcctcgtgttttggcatgctcacgaaaatggtcatgccctttcaaaacag 8972305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 15551501 - 15551566
Alignment:
Q  206 cttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaaca 271  Q
    ||||||||||||||||||||||| |||||||  ||||||| ||| ||||| |||| ||||||||||    
T  15551501 cttaattacacttttggtcctcgtgttttggtttactcacgaaaatggtcatgcctttttaaaaca 15551566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 269
Target Start/End: Complemental strand, 8425902 - 8425840
Alignment:
Q  207 ttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaa 269  Q
    ||||||||||||||||| || | ||||||| |||||||| ||| ||||| |||||||||||||    
T  8425902 ttaattacacttttggttcttgtgttttggtctactcacgaaattggtcctgcccttttaaaa 8425840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 42192790 - 42192738
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtc 255  Q
    ||||||||||||||||||||||||||  ||||| || |||||| ||| |||||    
T  42192790 aggcttaattacacttttggtcctcgcattttgaccaactcacgaaaatggtc 42192738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 201 - 328
Target Start/End: Complemental strand, 4755 - 4629
Alignment:
Q  201 gtaggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattt 300  Q
    |||||||||||||||||||||||| ||| |||||||| ||||||| ||||||||| ||||||||||||||||        ||||||||| ||||| ||||    
T  4755 gtaggcttaattacacttttggtcttcgtgttttggcatactcacgaaactggtcctgcccttttaaaacag-aacaaaacggtcctttaattatcattt 4657  T
Q  301 ttgttgcattttttgtcctaccccccat 328  Q
    ||||||||||||| ||||||||||||||    
T  4656 ttgttgcatttttcgtcctaccccccat 4629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 202 - 328
Target Start/End: Original strand, 2319670 - 2319795
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    |||||||||||||| |||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||        ||||||||  ||||| |||||    
T  2319670 taggcttaattacatttttggtcctcgtgttttggcctactcacgaaactggtcatgcccttttaaaacag-aacaaaacggtccttcaattatcatttt 2319768  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    |||||||||||| ||||||||||||||    
T  2319769 tgttgcatttttcgtcctaccccccat 2319795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 204 - 328
Target Start/End: Complemental strand, 10900475 - 10900352
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    |||||||||||||||||||||||||  ||||||||||||||| ||||||||| ||||||||||||||||        ||||||||  ||||| |||||||    
T  10900475 ggcttaattacacttttggtcctcgtattttggcctactcacgaaactggtcatgcccttttaaaacag-aacaaaacggtccttcaattatcatttttg 10900377  T
Q  304 ttgcattttttgtcctaccccccat 328  Q
    |||||||||| ||||||||||||||    
T  10900376 ttgcatttttcgtcctaccccccat 10900352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 202 - 322
Target Start/End: Original strand, 12935155 - 12935274
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||        ||||||||  ||||| |||||    
T  12935155 taggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaacag-aacaaaacggtccttcaattatcatttt 12935253  T
Q  302 tgttgcattttttgtcctacc 322  Q
    |||||||||||| ||||||||    
T  12935254 tgttgcatttttcgtcctacc 12935274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 202 - 328
Target Start/End: Original strand, 20741098 - 20741223
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||         |||||||  | ||| |||||    
T  20741098 taggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaacagaacaaaat-ggtccttcaaatatcatttt 20741196  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    |||||||||||| ||||||||||||||    
T  20741197 tgttgcatttttcgtcctaccccccat 20741223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 15828187 - 15828063
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattttt 302  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||| | |||||||||||||         ||||||||  ||||| ||||||    
T  15828187 aggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcatacccttttaaaaca-aaacaaaacggtccttcaattatcattttt 15828089  T
Q  303 gttgcattttttgtcctaccccccat 328  Q
    ||||||||||| ||||||||||||||    
T  15828088 gttgcatttttcgtcctaccccccat 15828063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 202 - 328
Target Start/End: Original strand, 18257135 - 18257260
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| |||||||| ||||||| ||||||||| ||||||||||||||||        ||||||||  ||||| |||||    
T  18257135 taggcttaattacacttttggtcctcgtgttttggcatactcacgaaactggtcctgcccttttaaaacag-aacaaaacggtccttcaattatcatttt 18257233  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    |||||||||||| ||| ||||||||||    
T  18257234 tgttgcatttttcgtcataccccccat 18257260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 204 - 328
Target Start/End: Complemental strand, 11277127 - 11277004
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    ||||||||||||||||||||||||| |||||||| ||||||| ||||||||| ||||||||||||||||        |||| |||  ||||| |||||||    
T  11277127 ggcttaattacacttttggtcctcgtgttttggcttactcacgaaactggtcctgcccttttaaaacag-aacaaaacggttcttcaattatcatttttg 11277029  T
Q  304 ttgcattttttgtcctaccccccat 328  Q
    |||||||||| ||||||||||||||    
T  11277028 ttgcatttttcgtcctaccccccat 11277004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 202 - 322
Target Start/End: Complemental strand, 11445534 - 11445415
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||| |||||||||||        ||||||||  ||||| |||||    
T  11445534 taggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcctttttaaaacag-aacaaaacggtccttcaattatcatttt 11445436  T
Q  302 tgttgcattttttgtcctacc 322  Q
    |||||||||||| ||||||||    
T  11445435 tgttgcatttttcgtcctacc 11445415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 202 - 322
Target Start/End: Complemental strand, 22219900 - 22219781
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||        ||||||||  ||||| |||||    
T  22219900 taggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaacag-aacaaaacggtccttcaattatcatttt 22219802  T
Q  302 tgttgcattttttgtcctacc 322  Q
    |||||||||||| || |||||    
T  22219801 tgttgcatttttcgttctacc 22219781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 202 - 322
Target Start/End: Complemental strand, 23075675 - 23075556
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||        ||||||||  ||||| |||||    
T  23075675 taggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcatgcccttttaaaacag-aacaaaacggtccttcaattatcatttt 23075577  T
Q  302 tgttgcattttttgtcctacc 322  Q
    |||||||||||| || |||||    
T  23075576 tgttgcatttttcgttctacc 23075556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 202 - 272
Target Start/End: Original strand, 1149463 - 1149533
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||||||||||||| |||||| |||||||||||||||| ||||||||| ||||||||||||||||    
T  1149463 taggcttaattacacttttgatcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaacag 1149533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 207 - 322
Target Start/End: Original strand, 10899942 - 10900056
Alignment:
Q  207 ttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgttg 306  Q
    |||||||||||||||||| ||| |||||||||||||||| ||||||||| ||||||||||||||||        ||||||||  ||||| ||||||||||    
T  10899942 ttaattacacttttggtcatcgtgttttggcctactcacgaaactggtcctgcccttttaaaacag-aacaaaacggtccttcaattatcatttttgttg 10900040  T
Q  307 cattttttgtcctacc 322  Q
    ||||||| ||||||||    
T  10900041 catttttcgtcctacc 10900056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 202 - 328
Target Start/End: Original strand, 11444985 - 11445110
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| |||||||||||||||| || |||||| ||||| ||||||||||         |||||||  ||||| |||||    
T  11444985 taggcttaattacacttttggtcctcgtgttttggcctactcacgaagctggtcctgcccctttaaaacagaataaaat-ggtccttcaattatcatttt 11445083  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    |||||||||||| ||||||||| ||||    
T  11445084 tgttgcatttttcgtcctaccctccat 11445110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 203 - 269
Target Start/End: Original strand, 23073998 - 23074064
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaa 269  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||    
T  23073998 aggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaa 23074064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 205 - 328
Target Start/End: Complemental strand, 31470860 - 31470738
Alignment:
Q  205 gcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgt 304  Q
    |||||||||||||||||||||| | ||||| |||||||||| ||||||||  ||||||||||||||||        ||||||||  ||||| ||||||||    
T  31470860 gcttaattacacttttggtccttgtgttttagcctactcacgaaactggttctgcccttttaaaacag-aacaaaacggtccttcaattatcatttttgt 31470762  T
Q  305 tgcattttttgtcctaccccccat 328  Q
    ||||||||| ||||||||||||||    
T  31470761 tgcatttttcgtcctaccccccat 31470738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 202 - 328
Target Start/End: Complemental strand, 12935704 - 12935579
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| |||||||| ||||||| ||||||||| |||| || ||||||||        ||||||||  ||||| |||||    
T  12935704 taggcttaattacacttttggtcctcgtgttttggcgtactcacgaaactggtcctgcctttataaaacag-aacaaaacggtccttcaattatcatttt 12935606  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    |||| ||||||| ||||||||||||||    
T  12935605 tgttacatttttcgtcctaccccccat 12935579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 204 - 328
Target Start/End: Complemental strand, 1149977 - 1149854
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    ||||||||||||||||||||||||| ||||| |||||||||  ||||||||| ||||||||||||| ||        ||||||||  ||||  |||||||    
T  1149977 ggcttaattacacttttggtcctcgtgttttagcctactcatgaaactggtcatgcccttttaaaatag-aacaaaacggtccttcaattaccatttttg 1149879  T
Q  304 ttgcattttttgtcctaccccccat 328  Q
    |||||||||| ||||||||||||||    
T  1149878 ttgcatttttcgtcctaccccccat 1149854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 204 - 322
Target Start/End: Complemental strand, 18257682 - 18257565
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    |||||||||| |||||||||||||| |||||| ||||||||| ||||||||| ||||||||||||||||        ||||||||  ||||| |||||||    
T  18257682 ggcttaattatacttttggtcctcgtgttttgacctactcacgaaactggtcctgcccttttaaaacag-aacaaaacggtccttcaattattatttttg 18257584  T
Q  304 ttgcattttttgtcctacc 322  Q
    || ||||||| ||||||||    
T  18257583 ttacatttttcgtcctacc 18257565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 18504922 - 18504987
Alignment:
Q  207 ttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||| |||| |||||||||||    
T  18504922 ttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcctttttaaaacag 18504987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 20741650 - 20741581
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||||||| |||||||||| |||||||||||||||| |||||| || ||||||||||||||||    
T  20741650 aggcttaattacactcttggtcctcgtgttttggcctactcacgaaactgatcctgcccttttaaaacag 20741581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 31470314 - 31470383
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||||||||||| |||||| |||||||||||||||| ||||||||| ||| ||||||||||||    
T  31470314 aggcttaattacacttttgatcctcgtgttttggcctactcacgaaactggtcatgctcttttaaaacag 31470383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 207 - 324
Target Start/End: Complemental strand, 2322760 - 2322644
Alignment:
Q  207 ttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgttg 306  Q
    |||||||||||||||||| ||| ||||||| |||||||| ||||| |||||||| |||||||||||        ||||||||  ||||| ||||||||||    
T  2322760 ttaattacacttttggtcttcgtgttttggtctactcacgaaactagtcttgcctttttaaaacag-aacaaaacggtccttcaattatcatttttgttg 2322662  T
Q  307 cattttttgtcctacccc 324  Q
    ||||||| ||||||||||    
T  2322661 catttttcgtcctacccc 2322644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 328
Target Start/End: Complemental strand, 18505463 - 18505341
Alignment:
Q  205 gcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgt 304  Q
    ||||||||| |||||||||||||| ||||||| |||||||| |||||| || |||||||||||||||         | ||||||  ||||| ||||||||    
T  18505463 gcttaattatacttttggtcctcgtgttttggtctactcacgaaactgatcctgcccttttaaaaca-taacaaaacagtccttcaattatcatttttgt 18505365  T
Q  305 tgcattttttgtcctaccccccat 328  Q
    ||||||||| ||||||||||||||    
T  18505364 tgcatttttcgtcctaccccccat 18505341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 325
Target Start/End: Original strand, 28472635 - 28472757
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| ||||||||| |||||| ||| ||||| |||| |||||||||||         |||| ||  ||||| |||||    
T  28472635 taggcttaattacacttttggtcctcgtgttttggccaactcacgaaagtggtcctgccattttaaaacagaacaaaat-ggtcattcaattatcatttt 28472733  T
Q  302 tgttgcattttttgtcctaccccc 325  Q
    |||||||||||| |||||||||||    
T  28472734 tgttgcatttttcgtcctaccccc 28472757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 325
Target Start/End: Original strand, 29859824 - 29859946
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| ||||||||| |||||| ||| ||||| |||| |||||||||||         |||| ||  ||||| |||||    
T  29859824 taggcttaattacacttttggtcctcgtgttttggccaactcacgaaagtggtcctgccattttaaaacagaacaaaat-ggtcattcaattatcatttt 29859922  T
Q  302 tgttgcattttttgtcctaccccc 325  Q
    |||||||||||| |||||||||||    
T  29859923 tgttgcatttttcgtcctaccccc 29859946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 271
Target Start/End: Original strand, 15827639 - 15827705
Alignment:
Q  205 gcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaaca 271  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||||||  || ||||||||||||    
T  15827639 gcttaattacacttttggtcctcgtgttttggcttactcacgaaactggttctgtccttttaaaaca 15827705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 29033436 - 29033502
Alignment:
Q  206 cttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||||||||||||||||  ||||||||| ||||| ||| ||||| ||||||||||||||||    
T  29033436 cttaattacacttttggtcctcgtattttggcctgctcacgaaattggtcctgcccttttaaaacag 29033502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 328
Target Start/End: Original strand, 4811372 - 4811495
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    ||||||||||||||||||||||  |  |||||| |||||||| ||||||||| ||||||||||||| ||        ||||||||  ||||| |||||||    
T  4811372 ggcttaattacacttttggtcccagtattttggtctactcacgaaactggtcatgcccttttaaaatag-aataaaacggtccttcaattatcatttttg 4811470  T
Q  304 ttgcattttttgtcctaccccccat 328  Q
    || ||||||| ||| ||||||||||    
T  4811471 tttcatttttcgtcttaccccccat 4811495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 206 - 272
Target Start/End: Complemental strand, 29035180 - 29035114
Alignment:
Q  206 cttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||||||| ||||||| ||||| |||||||||| ||| ||||  ||||||||||||||||    
T  29035180 cttaattacacttttcgtcctcgtgttttagcctactcacgaaattggttatgcccttttaaaacag 29035114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 325
Target Start/End: Original strand, 18296143 - 18296265
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    |||||||||||| | |||| ||||||| |||||| | ||||||||||| || | |||||||||||||||||        | ||||||   |||| |||||    
T  18296143 taggcttaattataattttagtcctcgtgttttgacttactcacaaaattgatattgcccttttaaaacagaacaaaacc-gtccttcatttatcatttt 18296241  T
Q  302 tgttgcattttttgtcctaccccc 325  Q
    |||||||||||| |||||||||||    
T  18296242 tgttgcatttttcgtcctaccccc 18296265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 328
Target Start/End: Complemental strand, 3835268 - 3835148
Alignment:
Q  207 ttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgttg 306  Q
    |||||||||||||||||||  | |||||| ||||||||| ||| ||||| ||||  ||||||||||         | |||||| ||||| |||||||| |    
T  3835268 ttaattacacttttggtccatgtgttttgacctactcacgaaaatggtcctgcctctttaaaacagaacaaaattg-tcctttaattatcatttttgtgg 3835170  T
Q  307 cattttttgtcctaccccccat 328  Q
    ||||||| ||||||||||||||    
T  3835169 catttttcgtcctaccccccat 3835148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 4811801 - 4811733
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||| ||||||| |||||| |||||||||||||||  |||||| || |||  |||||||||||    
T  4811801 ggcttaattatacttttgatcctcgtgttttggcctactcatgaaactgatcatgcatttttaaaacag 4811733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 11276589 - 11276658
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||||||| ||| |||| || ||||||| |||||||  |||||| || | ||||||||||||||    
T  11276589 aggcttaattacacgtttagtccgcgtgttttggtctactcatgaaactgatcctacccttttaaaacag 11276658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 260
Target Start/End: Complemental strand, 22534270 - 22534214
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcc 260  Q
    |||||||||||||||||||||||||  ||||| || |||||| ||| ||||| ||||    
T  22534270 ggcttaattacacttttggtcctcgtattttgaccaactcacgaaaatggtcctgcc 22534214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 39)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 202 - 328
Target Start/End: Complemental strand, 2865302 - 2865177
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||        ||||||||  ||||| |||||    
T  2865302 taggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaacag-aacaaaacggtccttcaattatcatttt 2865204  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    |||| ||||||| ||||||||||||||    
T  2865203 tgtttcatttttcgtcctaccccccat 2865177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 202 - 324
Target Start/End: Complemental strand, 18183516 - 18183395
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||        ||||||||  ||||| |||||    
T  18183516 taggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaacag-aacaaaacggtccttcaattatcatttt 18183418  T
Q  302 tgttgcattttttgtcctacccc 324  Q
    |||||||||||| ||||||||||    
T  18183417 tgttgcatttttcgtcctacccc 18183395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 204 - 328
Target Start/End: Complemental strand, 5819474 - 5819351
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||        ||||| ||  ||||| |||||||    
T  5819474 ggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaacag-aacaaaacggtcattcaattatcatttttg 5819376  T
Q  304 ttgcattttttgtcctaccccccat 328  Q
    |||||||||| ||||||||||||||    
T  5819375 ttgcatttttcgtcctaccccccat 5819351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 201 - 328
Target Start/End: Complemental strand, 24362384 - 24362258
Alignment:
Q  201 gtaggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattt 300  Q
    ||||||||||||||||||||||||||||  ||||||||||||||| ||||||||| ||||||||||||||||        ||||||||  | ||| ||||    
T  24362384 gtaggcttaattacacttttggtcctcgtattttggcctactcacgaaactggtcctgcccttttaaaacag-aataaaacggtccttcaagtatcattt 24362286  T
Q  301 ttgttgcattttttgtcctaccccccat 328  Q
    ||||||||||||| ||||||||||||||    
T  24362285 ttgttgcatttttcgtcctaccccccat 24362258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 204 - 328
Target Start/End: Original strand, 8647438 - 8647561
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||| |||||||||||         |||||||  ||||| |||||||    
T  8647438 ggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgccgttttaaaacagaacaaaat-ggtccttcaattatcatttttg 8647536  T
Q  304 ttgcattttttgtcctaccccccat 328  Q
    |||||||||| ||||||||||||||    
T  8647537 ttgcatttttcgtcctaccccccat 8647561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 204 - 328
Target Start/End: Original strand, 19359136 - 19359259
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    ||||||||||||||||||||||||  |||||||||||||||| ||||||||| ||||||||||||| ||        ||||||||  ||||| |||||||    
T  19359136 ggcttaattacacttttggtcctcttgttttggcctactcacgaaactggtcctgcccttttaaaatag-aacaaaacggtccttcaattatcatttttg 19359234  T
Q  304 ttgcattttttgtcctaccccccat 328  Q
    |||||||||| ||||||||||||||    
T  19359235 ttgcatttttcgtcctaccccccat 19359259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 202 - 322
Target Start/End: Complemental strand, 19359683 - 19359564
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||        ||||||||  ||||| |||||    
T  19359683 taggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaacag-aacaaaacggtccttcaattatcatttt 19359585  T
Q  302 tgttgcattttttgtcctacc 322  Q
    ||||| |||||| ||||||||    
T  19359584 tgttggatttttcgtcctacc 19359564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 99 - 194
Target Start/End: Complemental strand, 27056653 - 27056558
Alignment:
Q  99 gggatggttcatctttaaaacatgtttggtaagctcttttgagttgttgcttttgtttcttcgtcaaatatggtgtaaaaggcacttctaccccat 194  Q
    ||||||||||||| ||| ||||||||||||| |||||||| |||||||||| ||||||||| ||||| |||||||||||||| |||||| ||||||    
T  27056653 gggatggttcatccttataacatgtttggtatgctcttttaagttgttgctattgtttctttgtcaagtatggtgtaaaaggaacttctgccccat 27056558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 202 - 328
Target Start/End: Complemental strand, 164738 - 164613
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    |||||||||||| | ||||| |||||  ||||||||| |||||| ||||||||||||||||||||||||||        ||||||||  ||||| |||||    
T  164738 taggcttaattataattttgatcctcatgttttggccaactcactaaactggtcttgcccttttaaaacag-aacaaaacggtccttcaattatcatttt 164640  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    |||||||||||||||||||||||||||    
T  164639 tgttgcattttttgtcctaccccccat 164613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 29455288 - 29455164
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattttt 302  Q
    |||||||||||||| ||||||||||| ||||||| |||||||| ||||||||| ||||||||||||||||         |||||||  ||||| ||||||    
T  29455288 aggcttaattacacctttggtcctcgtgttttggtctactcacgaaactggtcctgcccttttaaaacagaacaaaat-ggtccttcaattatcattttt 29455190  T
Q  303 gttgcattttttgtcctaccccccat 328  Q
    ||||||||||| ||||||||||||||    
T  29455189 gttgcatttttcgtcctaccccccat 29455164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 197 - 322
Target Start/End: Complemental strand, 8647990 - 8647866
Alignment:
Q  197 tattgtaggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattata 296  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||| |||||| || ||||||||||||||||        ||||||||  |||||     
T  8647990 tattttaggcttaattacacttttggtcctcgtgttttggcctactcacgaaactgatcctgcccttttaaaacag-aacaaaacggtccttcaattatc 8647892  T
Q  297 atttttgttgcattttttgtcctacc 322  Q
    ||||||||||||||||| ||| ||||    
T  8647891 atttttgttgcatttttcgtcatacc 8647866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 202 - 322
Target Start/End: Original strand, 18182968 - 18183087
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    |||| |||||||||||||||||| ||| |||||||||||||||| ||||||||| ||||||||||||||||        ||||||||  ||||| |||||    
T  18182968 taggtttaattacacttttggtcatcgtgttttggcctactcacgaaactggtcatgcccttttaaaacag-aacaaaacggtccttcaattatcatttt 18183066  T
Q  302 tgttgcattttttgtcctacc 322  Q
    |||||||||||| ||||||||    
T  18183067 tgttgcatttttcgtcctacc 18183087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 202 - 272
Target Start/End: Original strand, 5818927 - 5818997
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||| |||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||    
T  5818927 taggtttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaacag 5818997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 202 - 272
Target Start/End: Complemental strand, 15372420 - 15372350
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||| |||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||    
T  15372420 taggtttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaacag 15372350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 202 - 325
Target Start/End: Original strand, 15708969 - 15709091
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||| | |||||||||||||||| ||||||||  ||||||||||||||||        ||||||||  ||||| |||||    
T  15708969 taggcttaattacacttttggtcctagtgttttggcctactcacgaaactggttatgcccttttaaaacag-aacaaaacggtccttcaattatcatttt 15709067  T
Q  302 tgttgcattttttgtcctaccccc 325  Q
    |||||||| ||| |||||||||||    
T  15709068 tgttgcatatttcgtcctaccccc 15709091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 202 - 272
Target Start/End: Original strand, 24331557 - 24331627
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||||||||||||||||||| ||||||  |||||||| ||||||||| ||||||||||||||||    
T  24331557 taggcttaattacacttttggtcctcgtgttttgatctactcacgaaactggtcctgcccttttaaaacag 24331627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 328
Target Start/End: Original strand, 8460928 - 8461053
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||| ||||||||||| |||  ||||||||||||||| ||||||||| ||||||||||||||||        ||||| ||  ||||| |||||    
T  8460928 taggcttaattccacttttggtcatcgtattttggcctactcacgaaactggtcctgcccttttaaaacag-aacaaaacggtcattcaattatcatttt 8461026  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    |||||||||||| ||| ||||||||||    
T  8461027 tgttgcatttttcgtcataccccccat 8461053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 8461477 - 8461408
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||| || ||| ||||||||||||    
T  8461477 aggcttaattacacttttggtcctcgtgttttggcctactcacgaaactgttcctgctcttttaaaacag 8461408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 204 - 271
Target Start/End: Original strand, 164191 - 164258
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaaca 271  Q
    ||||||||||||||||||||||||| |||||| ||||||||| ||||||||| |||||||||| ||||    
T  164191 ggcttaattacacttttggtcctcgtgttttgacctactcacgaaactggtcctgcccttttataaca 164258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 202 - 272
Target Start/End: Complemental strand, 14215790 - 14215720
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||||||| |||||||||||| |||||| ||||||||| |||||| || ||||||||||||||||    
T  14215790 taggcttaattacaattttggtcctcgtgttttgacctactcacgaaactgatcctgcccttttaaaacag 14215720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 322
Target Start/End: Original strand, 2864756 - 2864871
Alignment:
Q  206 cttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgtt 305  Q
    ||||||||||||||||||||| | |||||||||||||||| ||| || || |||||||||||||||         ||||||||  ||||| |||||||||    
T  2864756 cttaattacacttttggtccttgtgttttggcctactcacgaaattgatcatgcccttttaaaaca-taacaaaacggtccttcaattatcatttttgtt 2864854  T
Q  306 gcattttttgtcctacc 322  Q
    |||||||| ||||||||    
T  2864855 gcatttttcgtcctacc 2864871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 4222266 - 4222199
Alignment:
Q  205 gcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||||||||||||||||| ||||||| || ||||| ||| ||||| ||||||||||||||||    
T  4222266 gcttaattacacttttggtcctcgtgttttgggcttctcacgaaaatggtcatgcccttttaaaacag 4222199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 7349562 - 7349495
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaaca 271  Q
    ||||||||||||||||||||||||| ||||||| |||||||| ||| ||||| ||| |||||||||||    
T  7349562 ggcttaattacacttttggtcctcgtgttttggtctactcacgaaattggtcctgctcttttaaaaca 7349495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 14215243 - 14215309
Alignment:
Q  206 cttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||||||||||||||| |||||||| ||||||| ||||||||  | ||||||||||||||    
T  14215243 cttaattacacttttggtcctcgtgttttggcttactcacgaaactggttatacccttttaaaacag 14215309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 322
Target Start/End: Original strand, 29454739 - 29454857
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattttt 302  Q
    |||||||||| ||||||||||| | | |||||||||||||||| ||| ||||| ||||||||||||||||        ||||||||  ||||| ||||||    
T  29454739 aggcttaatttcacttttggtcattgtgttttggcctactcacgaaattggtcatgcccttttaaaacag-aacaaaacggtccttgaattatcattttt 29454837  T
Q  303 gttgcattttttgtcctacc 322  Q
    | ||||||||| ||||||||    
T  29454838 gctgcatttttcgtcctacc 29454857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 269
Target Start/End: Complemental strand, 14464067 - 14464000
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaa 269  Q
    ||||||||||||||||||| ||||||| |||||||||||||||| |||||  | ||| ||||||||||    
T  14464067 taggcttaattacacttttagtcctcgtgttttggcctactcacgaaactaattttgtccttttaaaa 14464000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 269
Target Start/End: Original strand, 16018588 - 16018654
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaa 269  Q
    |||||||||||||||||||||| ||| ||||||||||| |||| ||| || || |||||||||||||    
T  16018588 aggcttaattacacttttggtcttcgtgttttggcctattcacgaaattgatcatgcccttttaaaa 16018654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 325
Target Start/End: Original strand, 4219663 - 4219783
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    |||||||||||||||||| |||||| ||||||| ||| | |||||| ||||| |||| |||||||||||          |||||||  |||| |||||||    
T  4219663 ggcttaattacacttttgatcctcgtgttttgggctatttacaaaaatggtcatgcctttttaaaacagaacaaagt-tgtcctttagttatcatttttg 4219761  T
Q  304 ttgcattttttgtcctaccccc 325  Q
    |||||||||| |||||||||||    
T  4219762 ttgcatttttcgtcctaccccc 4219783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 25000635 - 25000566
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||||||||||||||| ||  |||||||||||||||| ||| ||||| ||  ||||||||||||    
T  25000635 aggcttaattacacttttggtcttcatgttttggcctactcacgaaattggtcatgttcttttaaaacag 25000566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 7348559 - 7348627
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||||| |||||||||||  ||||| | |||||||| ||| ||||| ||||||||||||||||    
T  7348559 ggcttaattacatttttggtcctcatgttttagtctactcacgaaattggtcgtgcccttttaaaacag 7348627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 6018315 - 6018382
Alignment:
Q  205 gcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||| ||||||| |||| ||||||  |||||||| ||||||||| || |||||||||||||    
T  6018315 gcttaattacatttttggttctcgtgttttgttctactcacgaaactggtcatgtccttttaaaacag 6018382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 269
Target Start/End: Complemental strand, 16019134 - 16019067
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaa 269  Q
    |||| |||||||||||||||||||||  |||||||| ||||||| ||| ||||| ||| |||||||||    
T  16019134 taggtttaattacacttttggtcctcatgttttggcatactcacgaaattggtcctgctcttttaaaa 16019067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 328
Target Start/End: Original strand, 24361843 - 24361960
Alignment:
Q  210 attacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgttgcat 309  Q
    |||||||||||||||| |  |||||||||||| ||| |||||| || ||||||| ||||||||         |||||||  | ||| |||||||||||||    
T  24361843 attacacttttggtccccatgttttggcctacccacgaaactgatcatgcccttgtaaaacagaacaaaat-ggtccttcaagtatcatttttgttgcat 24361941  T
Q  310 tttttgtcctaccccccat 328  Q
    |||| ||||||||||||||    
T  24361942 ttttcgtcctaccccccat 24361960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 328
Target Start/End: Original strand, 25000167 - 25000213
Alignment:
Q  282 ggtcctttcattataatttttgttgcattttttgtcctaccccccat 328  Q
    |||||||| ||||| |||||| |||||||||||||||||||||||||    
T  25000167 ggtcctttaattatcatttttattgcattttttgtcctaccccccat 25000213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 322
Target Start/End: Complemental strand, 15709513 - 15709397
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    ||||||||||||||||||||| | | |||||||||||||||  ||||| ||| ||||| ||||||||||        |||||||||  |||| |||| ||    
T  15709513 ggcttaattacacttttggtcattgtgttttggcctactcatgaaactagtcatgccc-tttaaaacag-aacaaaacggtcctttagttatcatttctg 15709416  T
Q  304 ttgcattttttgtcctacc 322  Q
    |||||||||| ||||||||    
T  15709415 ttgcatttttcgtcctacc 15709397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 4623148 - 4623216
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||||||||||||| ||| |||||| | ||||||| ||| ||||| ||||  ||||||||||    
T  4623148 ggcttaattacacttttggtcatcgtgttttgacttactcacgaaattggtcctgcctctttaaaacag 4623216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 257
Target Start/End: Complemental strand, 4967327 - 4967264
Alignment:
Q  193 attatattgtaggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtctt 257  Q
    |||||||| ||||||||||||||||||||||||||   ||||| || |||||||||| |||||||    
T  4967327 attatatt-taggcttaattacacttttggtcctcacattttgaccaactcacaaaaatggtctt 4967264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 15371873 - 15371938
Alignment:
Q  206 cttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||||||||| ||||||  |||||| ||||||||  || ||||| ||||||||||||||||    
T  15371873 cttaattacacttttgatcctcgtattttggtctactcac-gaattggtcctgcccttttaaaacag 15371938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 272
Target Start/End: Original strand, 24325218 - 24325280
Alignment:
Q  210 attacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||||||||| |  |||||||||||| ||| |||||| || ||||||| ||||||||    
T  24325218 attacacttttggtccccatgttttggcctacccacgaaactgatcatgcccttgtaaaacag 24325280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 47)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 202 - 328
Target Start/End: Complemental strand, 31779199 - 31779074
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||        ||||||||  ||||| |||||    
T  31779199 taggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaacag-aacaaaacggtccttcaattatcatttt 31779101  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    |||||||||||| |||| |||||||||    
T  31779100 tgttgcatttttcgtcccaccccccat 31779074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 202 - 322
Target Start/End: Complemental strand, 4275911 - 4275792
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||| ||||||||||||        ||||||||| ||||| |||||    
T  4275911 taggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcatgctcttttaaaacag-aacaaaacggtcctttaattatcatttt 4275813  T
Q  302 tgttgcattttttgtcctacc 322  Q
    |||||||||||| ||||||||    
T  4275812 tgttgcatttttcgtcctacc 4275792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 202 - 328
Target Start/End: Original strand, 20840558 - 20840683
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||| |||||||| ||        ||||||||  ||||| |||||    
T  20840558 taggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcctttttaaaatag-aacaaaacggtccttcaattatcatttt 20840656  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    |||||||||||| ||||||||||||||    
T  20840657 tgttgcatttttcgtcctaccccccat 20840683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 203 - 325
Target Start/End: Original strand, 27393660 - 27393781
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattttt 302  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||| |||||||||||        ||||||||  ||||| ||||||    
T  27393660 aggcttaattacacttttggtcctcgtgttttgacctactcacaaaactggtcctgccattttaaaacag-aacaaaacggtccttcaattatcattttt 27393758  T
Q  303 gttgcattttttgtcctaccccc 325  Q
    ||||||||||| |||||||||||    
T  27393759 gttgcatttttcgtcctaccccc 27393781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 204 - 328
Target Start/End: Complemental strand, 39556122 - 39555999
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||         |||||||  ||||| ||||| |    
T  39556122 ggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaacagaacaaaat-ggtccttcaattatcattttcg 39556024  T
Q  304 ttgcattttttgtcctaccccccat 328  Q
    |||||||||| ||||||||||||||    
T  39556023 ttgcatttttcgtcctaccccccat 39555999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 202 - 328
Target Start/End: Original strand, 5136978 - 5137103
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    |||| |||||||||||||||||||||| ||||||||| |||||| ||| ||||| ||||||||||||||||        ||||||||  ||||| |||||    
T  5136978 taggtttaattacacttttggtcctcgtgttttggccaactcacgaaattggtcatgcccttttaaaacag-aacaaaacggtccttcaattatcatttt 5137076  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    |||||||||||| ||||||||||||||    
T  5137077 tgttgcatttttcgtcctaccccccat 5137103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 202 - 328
Target Start/End: Original strand, 48452987 - 48453112
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||| ||||||||||||||| ||| |||||||||||||||| ||||||||| |||| |||||||||||        ||||||||  ||||| |||||    
T  48452987 taggcttgattacacttttggtcatcgtgttttggcctactcacgaaactggtcctgccattttaaaacag-aacaaaacggtccttcaattatcatttt 48453085  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    |||||||||||| ||||||||||||||    
T  48453086 tgttgcatttttcgtcctaccccccat 48453112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 32535508 - 32535440
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||    
T  32535508 ggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaacag 32535440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 207 - 328
Target Start/End: Original strand, 41046703 - 41046823
Alignment:
Q  207 ttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgttg 306  Q
    |||||||||||||||||||||| ||||||||||| | || ||||||||| ||||||||||||||||        ||||||||  ||||| ||||||||||    
T  41046703 ttaattacacttttggtcctcgtgttttggcctaattacgaaactggtcatgcccttttaaaacag-aacaaaacggtccttcaattatcatttttgttg 41046801  T
Q  307 cattttttgtcctaccccccat 328  Q
    ||||||| ||||||||||||||    
T  41046802 catttttcgtcctaccccccat 41046823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 197 - 322
Target Start/End: Complemental strand, 43973992 - 43973868
Alignment:
Q  197 tattgtaggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattata 296  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||  ||||||||||||||||        ||||| ||  |||||     
T  43973992 tattttaggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggttctgcccttttaaaacag-aacaaaacggtcattcaattatc 43973894  T
Q  297 atttttgttgcattttttgtcctacc 322  Q
    ||||||||||||||||| ||||||||    
T  43973893 atttttgttgcatttttcgtcctacc 43973868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 202 - 322
Target Start/End: Original strand, 17464489 - 17464608
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| ||||||||||| || | ||||||||| ||||||||||||||||        ||||||||  ||||| |||||    
T  17464489 taggcttaattacacttttggtcctcgtgttttggcctattcgcgaaactggtcatgcccttttaaaacag-aacaaaacggtccttcaattatcatttt 17464587  T
Q  302 tgttgcattttttgtcctacc 322  Q
    |||||||||||| ||||||||    
T  17464588 tgttgcatttttcgtcctacc 17464608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 322
Target Start/End: Complemental strand, 30098309 - 30098191
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattttt 302  Q
    |||||||||||||||||||||||||| |||||| | ||||||| ||||||||||||||||||||||||||         |||||||  ||||| ||||||    
T  30098309 aggcttaattacacttttggtcctcgtgttttgacatactcacgaaactggtcttgcccttttaaaacagaacaaaat-ggtccttcaattatcattttt 30098211  T
Q  303 gttgcattttttgtcctacc 322  Q
    ||||||||||| ||||||||    
T  30098210 gttgcatttttcgtcctacc 30098191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 202 - 325
Target Start/End: Original strand, 30104480 - 30104602
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| |||||| ||||||||| ||| ||||| |||||||||||||||         ||||||||  ||||| |||||    
T  30104480 taggcttaattacacttttggtcctcgtgttttgacctactcacgaaattggtcctgcccttttaaaaca-aaatagaacggtccttcaattatcatttt 30104578  T
Q  302 tgttgcattttttgtcctaccccc 325  Q
    |||||||||||| |||||||||||    
T  30104579 tgttgcatttttcgtcctaccccc 30104602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 203 - 322
Target Start/End: Complemental strand, 20841107 - 20840989
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattttt 302  Q
    ||||||||||||||||||||| |||| |||||||||||||||| ||||||||| |||| |||||||||||        ||||||||  ||||| ||||||    
T  20841107 aggcttaattacacttttggtgctcgtgttttggcctactcacgaaactggtcctgcctttttaaaacag-aacaaaacggtccttcaattatcattttt 20841009  T
Q  303 gttgcattttttgtcctacc 322  Q
    ||||||||||| ||||||||    
T  20841008 gttgcatttttcgtcctacc 20840989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 202 - 328
Target Start/End: Complemental strand, 24301103 - 24300978
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||| ||||| |||| ||||||||||         ||||||||  | ||| |||||    
T  24301103 taggcttaattacacttttggtcctcgtgttttggcctactcacgaaattggtcctgccattttaaaaca-aaacaaaacggtccttcgagtatcatttt 24301005  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    |||||||||||| ||||||||||||||    
T  24301004 tgttgcatttttcgtcctaccccccat 24300978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 204 - 326
Target Start/End: Original strand, 29801356 - 29801477
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    ||||||||||||||||||||| ||| |||||||| ||||||||||||||||| ||||||||||||||||        ||||||||  | ||| |||||||    
T  29801356 ggcttaattacacttttggtcatcgtgttttggcatactcacaaaactggtcctgcccttttaaaacag-aacaaaacggtccttcaagtatcatttttg 29801454  T
Q  304 ttgcattttttgtcctacccccc 326  Q
    |||||||||| ||| ||||||||    
T  29801455 ttgcatttttcgtcttacccccc 29801477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 204 - 322
Target Start/End: Complemental strand, 37727475 - 37727358
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    ||||||||||||||||||||||||  |||||||||||||||| ||||||||| ||| ||||||||||||        ||||||||  ||||| |||||||    
T  37727475 ggcttaattacacttttggtcctcatgttttggcctactcacgaaactggtcctgctcttttaaaacag-aacaaaacggtccttcaattatcatttttg 37727377  T
Q  304 ttgcattttttgtcctacc 322  Q
    |||||||||| ||||||||    
T  37727376 ttgcatttttcgtcctacc 37727358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 39555577 - 39555646
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||| |||||||||||    
T  39555577 aggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgccattttaaaacag 39555646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 23644461 - 23644585
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattttt 302  Q
    ||||||||||||||||||||||||||  ||||||||||||||| ||| ||||| |||| |||||||||||        | ||||||  ||||| ||||||    
T  23644461 aggcttaattacacttttggtcctcgtattttggcctactcacgaaattggtcctgccattttaaaacag-aacaaaacagtccttcaattatcattttt 23644559  T
Q  303 gttgcattttttgtcctaccccccat 328  Q
    ||||||||||| ||||||||||||||    
T  23644560 gttgcatttttcgtcctaccccccat 23644585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 204 - 328
Target Start/End: Original strand, 43973441 - 43973564
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    ||||||||||||||||||||||||| |||||| ||||||||| ||| || |  ||||||||||||||||        ||||||||  ||||| |||||||    
T  43973441 ggcttaattacacttttggtcctcgtgttttgtcctactcacgaaaatgattatgcccttttaaaacag-aacaaaacggtccttcaattatcatttttg 43973539  T
Q  304 ttgcattttttgtcctaccccccat 328  Q
    |||||||||| ||||||||||||||    
T  43973540 ttgcatttttcgtcctaccccccat 43973564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 202 - 272
Target Start/End: Complemental strand, 29801963 - 29801893
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||||||||||||| ||||||  ||||||||||||||| ||||||||| ||||||||||||||||    
T  29801963 taggcttaattacacttttgatcctcgtattttggcctactcacgaaactggtcctgcccttttaaaacag 29801893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 203 - 322
Target Start/End: Original strand, 31778652 - 31778770
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattttt 302  Q
    |||||||||||||||||||||||||| ||||||| |||||||  ||||||||| ||||||||||||||||        ||||||||   |||| ||||||    
T  31778652 aggcttaattacacttttggtcctcgtgttttggtctactcatgaaactggtcctgcccttttaaaacag-aacaaaacggtccttcgtttatcattttt 31778750  T
Q  303 gttgcattttttgtcctacc 322  Q
    ||||||||||| ||||||||    
T  31778751 gttgcatttttcgtcctacc 31778770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 202 - 272
Target Start/End: Complemental strand, 37222118 - 37222048
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| |||| |||||||||||    
T  37222118 taggcttaattacacttttggtcctcgtgttttgccctactcacaaaattggtcctgccattttaaaacag 37222048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 204 - 269
Target Start/End: Original strand, 25853234 - 25853299
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaa 269  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||| ||||| |||||||||||||    
T  25853234 ggcttaattacacttttggtcctcgtgttttggcctactcacgaaattggtcatgcccttttaaaa 25853299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 37726928 - 37727052
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattttt 302  Q
    |||||||||||||||||||||||||| ||||||| || || || ||||||||  |||||||||||||||         ||||||||  ||||| ||||||    
T  37726928 aggcttaattacacttttggtcctcgtgttttggtctgcttacgaaactggttctgcccttttaaaaca-taacaaaacggtccttcaattatcattttt 37727026  T
Q  303 gttgcattttttgtcctaccccccat 328  Q
    ||||||||||| ||||||||||||||    
T  37727027 gttgcatttttcgtcctaccccccat 37727052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 207 - 328
Target Start/End: Complemental strand, 25612519 - 25612399
Alignment:
Q  207 ttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgttg 306  Q
    |||||||||||||||||||||| |||||| ||||||||| ||| ||||| ||||||||||||| ||        | ||| ||| ||||| ||||||||||    
T  25612519 ttaattacacttttggtcctcgtgttttgacctactcacgaaattggtcctgcccttttaaaatag-aacaaaactgtcttttaattatcatttttgttg 25612421  T
Q  307 cattttttgtcctaccccccat 328  Q
    ||||||| ||||||||||||||    
T  25612420 catttttcgtcctaccccccat 25612399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 269
Target Start/End: Complemental strand, 5137528 - 5137461
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaa 269  Q
    ||||||||||||||||||||||||||| |||||||||||||||  ||||||||  |||||||||||||    
T  5137528 taggcttaattacacttttggtcctcgtgttttggcctactcatgaaactggttctgcccttttaaaa 5137461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 22425354 - 22425235
Alignment:
Q  208 taattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgttgc 307  Q
    ||||||||||||||||||||| |||| ||||||||||| || |||||| ||||||| ||||||||        |||| |||  ||||| |||||||||||    
T  22425354 taattacacttttggtcctcgtgtttcggcctactcacgaatctggtcatgcccttgtaaaacag-aacaaaacggtacttcaattatcatttttgttgc 22425256  T
Q  308 attttttgtcctaccccccat 328  Q
    |||||| ||||||||||||||    
T  22425255 atttttcgtcctaccccccat 22425235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 206 - 328
Target Start/End: Complemental strand, 25853770 - 25853649
Alignment:
Q  206 cttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgtt 305  Q
    |||||||||||||||| |||||| ||||||  |||||||| |||||||||||| | |||||||||||         |||||||  ||||| |||||||||    
T  25853770 cttaattacacttttgatcctcgtgttttgctctactcacgaaactggtcttgtcattttaaaacagaacaaaat-ggtccttcaattatcatttttgtt 25853672  T
Q  306 gcattttttgtcctaccccccat 328  Q
    |||||||| ||||||||||||||    
T  25853671 gcatttttcgtcctaccccccat 25853649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 207 - 322
Target Start/End: Original strand, 32534962 - 32535076
Alignment:
Q  207 ttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgttg 306  Q
    |||||||||||||||||||||| |||||||| ||||||| ||| ||||| |||| |||||||||||        ||||||||  ||||| ||||||||||    
T  32534962 ttaattacacttttggtcctcgtgttttggcatactcacgaaattggtcctgcctttttaaaacag-aacaaaacggtccttcaattatcatttttgttg 32535060  T
Q  307 cattttttgtcctacc 322  Q
    ||||||| ||||||||    
T  32535061 catttttcgtcctacc 32535076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 17465038 - 17464913
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattttt 302  Q
    ||||||||||||| |||||||||||| |||||||||||| ||  ||||||||||  ||||||||||| ||        ||||||||  ||||| ||||||    
T  17465038 aggcttaattacatttttggtcctcgtgttttggcctacgcatgaaactggtctgacccttttaaaatag-aacaaaacggtccttcaattatcattttt 17464940  T
Q  303 gttgca-ttttttgtcctaccccccat 328  Q
    |||||| ||||||||||||||||||||    
T  17464939 gttgcatttttttgtcctaccccccat 17464913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 202 - 328
Target Start/End: Complemental strand, 26837902 - 26837778
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| ||||||||||||| || ||||||||  ||||| ||||||| ||        ||||| ||  | ||| |||||    
T  26837902 taggcttaattacacttttggtcctcgtgttttggcctacttacgaaactggttctgccc-tttaaaatag-aacaaaacggtcattcaagtatcatttt 26837805  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    |||||||||||||||||||||||||||    
T  26837804 tgttgcattttttgtcctaccccccat 26837778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 27394123 - 27394054
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||  |||| |||| |||||||||||    
T  27394123 aggcttaattacacttttggtcctcgtgttttggcctactcacgaaataggtcctgcctttttaaaacag 27394054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 23645010 - 23644942
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||| |||||||||||||| |||||||||||||||| ||| ||||| | ||||||||||||||    
T  23645010 ggcttaattatacttttggtcctcgtgttttggcctactcacgaaattggtcctacccttttaaaacag 23644942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 51473429 - 51473496
Alignment:
Q  205 gcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||||||||||||||||| ||||||| ||| |||| ||| ||||| ||||||||||||||||    
T  51473429 gcttaattacacttttggtcctcgtgttttggtctattcacgaaattggtcctgcccttttaaaacag 51473496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 322
Target Start/End: Original strand, 22424805 - 22424931
Alignment:
Q  195 tatattgtaggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcatta 294  Q
    |||||| |||||||||||||||||||||| |||| ||||  ||||||| || ||||||||  || |||||||||||||        ||||||||  ||||    
T  22424805 tatattttaggcttaattacacttttggttctcgtgtttaagcctacttacgaaactggttctgtccttttaaaacag-aacaaaacggtccttcaatta 22424903  T
Q  295 taatttttgttgcattttttgtcctacc 322  Q
    | ||||||||||||||||| ||||||||    
T  22424904 tcatttttgttgcatttttcgtcctacc 22424931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 270
Target Start/End: Complemental strand, 23228552 - 23228486
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaac 270  Q
    |||||||||||||||||||||| || |||||||||||||||| ||| || || ||||||||||||||    
T  23228552 ggcttaattacacttttggtccccgtgttttggcctactcacgaaaatgatcatgcccttttaaaac 23228486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 272
Target Start/End: Original strand, 37220547 - 37220625
Alignment:
Q  194 ttatattgtaggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||| |||||||||||||||||||||||||||  ||||||||||||||||| |  | || ||| ||||||||||||    
T  37220547 ttatattataggcttaattacacttttggtcctcgtattttggcctactcacaatatcgatcatgctcttttaaaacag 37220625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 202 - 271
Target Start/End: Complemental strand, 51474881 - 51474812
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaaca 271  Q
    |||||||||||||||||||||| | || |||||||| ||||||| ||| ||||| |||||||||||||||    
T  51474881 taggcttaattacacttttggttcccgtgttttggcatactcacgaaattggtcatgcccttttaaaaca 51474812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 202 - 322
Target Start/End: Original strand, 26837358 - 26837477
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    |||| ||||||||| |||||||||| |  ||||||||||||||| ||| ||||| |||||||||| ||||         ||||||||  ||||| |||||    
T  26837358 taggtttaattacatttttggtccttgtattttggcctactcacgaaattggtcctgcccttttataaca-taacgaaacggtccttcaattatcatttt 26837456  T
Q  302 tgttgcattttttgtcctacc 322  Q
    |||||||||||| ||||||||    
T  26837457 tgttgcatttttcgtcctacc 26837477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 245
Target Start/End: Original strand, 45965936 - 45965979
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcac 245  Q
    ||||||||||||||||||||||||||| |||||||| |||||||    
T  45965936 taggcttaattacacttttggtcctcgtgttttggcatactcac 45965979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 322
Target Start/End: Original strand, 26274570 - 26274684
Alignment:
Q  207 ttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgttg 306  Q
    ||||||||| ||||| |||| |  |||||| |||||||| ||||||||| ||||||||||||||||        ||||||||  ||||| ||||||||||    
T  26274570 ttaattacatttttgatccttgtattttggactactcacgaaactggtcctgcccttttaaaacag-aacaaaacggtccttcaattatcatttttgttg 26274668  T
Q  307 cattttttgtcctacc 322  Q
    ||||||| ||| ||||    
T  26274669 catttttcgtcatacc 26274684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 265
Target Start/End: Complemental strand, 50116954 - 50116893
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgccctttt 265  Q
    |||||||||||||||||| |||||| |||||| | ||||||| ||| ||||| |||||||||    
T  50116954 ggcttaattacacttttgatcctcgtgttttgacttactcacgaaattggtcatgccctttt 50116893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 32697244 - 32697177
Alignment:
Q  205 gcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||| | |||||||||||| ||||| |||||||||| ||| | |||  |||||||||||||||    
T  32697244 gcttaattatatttttggtcctcgtgttttagcctactcacgaaattagtcacgcccttttaaaacag 32697177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 272
Target Start/End: Complemental strand, 26275113 - 26275043
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||| ||||||| | |||||| ||| | |||||| ||||||||| ||||||||| | ||||||||||||||    
T  26275113 taggtttaattataattttggcccttgtgttttgacctactcacgaaactggtcctacccttttaaaacag 26275043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 24300560 - 24300624
Alignment:
Q  207 ttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||| |||||||| ||| |||||||| || |||| ||||||||| || |||||||||||||    
T  24300560 ttaattacatttttggtc-tcgtgttttggcttattcacgaaactggtcctgtccttttaaaacag 24300624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 52375879 - 52375826
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtc 255  Q
    |||||||||||||||||||||||||||  ||||| || |||||| ||| |||||    
T  52375879 taggcttaattacacttttggtcctcgcattttgaccaactcacgaaaatggtc 52375826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 202 - 328
Target Start/End: Original strand, 18984117 - 18984242
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| ||||||| |||||||| ||||||||| ||||||||||||||||        ||||||||  ||||| |||||    
T  18984117 taggcttaattacacttttggtcctcgtgttttggtctactcacgaaactggtcctgcccttttaaaacag-aacaaaacggtccttcaattatcatttt 18984215  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    |||||||||||| ||||||||||||||    
T  18984216 tgttgcatttttcgtcctaccccccat 18984242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 5540364 - 5540240
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattttt 302  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||| || |||||||||||||        ||||||||  ||||| ||||||    
T  5540364 aggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgtccttttaaaacag-aagaaaacggtccttcaattatcattttt 5540266  T
Q  303 gttgcattttttgtcctaccccccat 328  Q
    ||||||||||| ||||||||||||||    
T  5540265 gttgcatttttcgtcctaccccccat 5540240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 29869619 - 29869743
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattttt 302  Q
    |||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||        ||||||||  ||||| ||||||    
T  29869619 aggcttaattacacttttggtcctcgtgttttggcatactcacgaaactggtcttgcccttttaaaacag-aacaaaacggtccttcaattattattttt 29869717  T
Q  303 gttgcattttttgtcctaccccccat 328  Q
    ||||||||||| ||||||| ||||||    
T  29869718 gttgcatttttcgtcctacaccccat 29869743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 50970824 - 50970700
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattttt 302  Q
    |||||||||||||||||||||||||| ||||||||||||| || ||||||||| ||||||||||||||||        ||||||||  ||||| ||||||    
T  50970824 aggcttaattacacttttggtcctcgtgttttggcctacttacgaaactggtcctgcccttttaaaacag-aacaaaacggtccttcaattatcattttt 50970726  T
Q  303 gttgcattttttgtcctaccccccat 328  Q
    ||||||||||| ||||||||||||||    
T  50970725 gttgcatttttcgtcctaccccccat 50970700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 204 - 328
Target Start/End: Original strand, 29306953 - 29307076
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    |||||||||||||||||| |||||| |||||||||||||||| ||||||||| || |||||||||||||        ||||||||  ||||| |||||||    
T  29306953 ggcttaattacacttttgatcctcgtgttttggcctactcacgaaactggtcatgtccttttaaaacag-aacaaaacggtccttcaattatcatttttg 29307051  T
Q  304 ttgcattttttgtcctaccccccat 328  Q
    |||||||||| ||||||||||||||    
T  29307052 ttgcatttttcgtcctaccccccat 29307076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 205 - 322
Target Start/End: Original strand, 8678542 - 8678658
Alignment:
Q  205 gcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgt 304  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||         ||||||||  ||||| ||||||||    
T  8678542 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaaca-aaacaaaacggtccttcaattatcatttttgt 8678640  T
Q  305 tgcattttttgtcctacc 322  Q
    ||||||||| ||||||||    
T  8678641 tgcatttttcgtcctacc 8678658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 203 - 325
Target Start/End: Complemental strand, 15646741 - 15646620
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattttt 302  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||| || | ||||||||||||||        ||||||||  ||||| ||||||    
T  15646741 aggcttaattacacttttggtcctcgtgttttggcctactcacgaaactgatcctacccttttaaaacag-aacaaaacggtccttcaattatcattttt 15646643  T
Q  303 gttgcattttttgtcctaccccc 325  Q
    ||||||||||| |||||||||||    
T  15646642 gttgcatttttcgtcctaccccc 15646620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 202 - 322
Target Start/End: Complemental strand, 15173640 - 15173522
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||         |||||||  ||||| |||||    
T  15173640 taggcttaattacacttttggtcctcgtgttttggcctactcacaaaactggtcctg-ccttttaaaacagaacaaaat-ggtccttcaattatcatttt 15173543  T
Q  302 tgttgcattttttgtcctacc 322  Q
    |||||||||||| ||||||||    
T  15173542 tgttgcatttttcgtcctacc 15173522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 206 - 322
Target Start/End: Complemental strand, 17433758 - 17433643
Alignment:
Q  206 cttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgtt 305  Q
    ||||||||||||||||||||||| ||| |||||||||||| ||||||||| ||||||||||||||||        ||||||||  ||||| |||||||||    
T  17433758 cttaattacacttttggtcctcgtgttctggcctactcacgaaactggtcatgcccttttaaaacag-aacaaaacggtccttcaattatcatttttgtt 17433660  T
Q  306 gcattttttgtcctacc 322  Q
    |||||||| ||||||||    
T  17433659 gcatttttcgtcctacc 17433643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 202 - 322
Target Start/End: Original strand, 50970276 - 50970395
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||| |||||||| |||        ||||||||  ||||| |||||    
T  50970276 taggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgctcttttaaatcag-aacaaaacggtccttcaattatcatttt 50970374  T
Q  302 tgttgcattttttgtcctacc 322  Q
    |||||||||||| ||||||||    
T  50970375 tgttgcatttttcgtcctacc 50970395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 202 - 272
Target Start/End: Original strand, 15646190 - 15646260
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||||| |||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||    
T  15646190 taggcttaattatacttttggtcctcgtgttttggcctactcacgaaactggtcatgcccttttaaaacag 15646260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 203 - 322
Target Start/End: Complemental strand, 18984665 - 18984547
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattttt 302  Q
    |||||||||||||||||||||||| | |||||||||||||||| ||| ||||| ||||||||||||||||        ||||||||  ||||| ||||||    
T  18984665 aggcttaattacacttttggtccttgtgttttggcctactcacgaaattggtcctgcccttttaaaacag-aacaaaacggtccttcaattatcattttt 18984567  T
Q  303 gttgcattttttgtcctacc 322  Q
    ||||||||||| ||||||||    
T  18984566 gttgcatttttcgtcctacc 18984547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 206 - 272
Target Start/End: Complemental strand, 33144462 - 33144396
Alignment:
Q  206 cttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||    
T  33144462 cttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaacag 33144396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 202 - 328
Target Start/End: Original strand, 9018971 - 9019096
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| ||||||||||||| || ||||||||  ||||||||||||||||        ||||| ||  | ||| |||||    
T  9018971 taggcttaattacacttttggtcctcgtgttttggcctactaacgaaactggttctgcccttttaaaacag-aacaaaacggtcattcaactatcatttt 9019069  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    |||||||||||| ||||||||||||||    
T  9019070 tgttgcatttttcgtcctaccccccat 9019096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 202 - 328
Target Start/End: Complemental strand, 26859606 - 26859481
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    |||||||||||||||||||| |||||| ||||||| |||||||| |||||  || ||||||||||||||||        ||||||||  ||||| |||||    
T  26859606 taggcttaattacacttttgatcctcgtgttttgggctactcacgaaactaatcctgcccttttaaaacag-aacaatacggtccttcaattatcatttt 26859508  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    |||||||||||| ||||||||||||||    
T  26859507 tgttgcatttttcgtcctaccccccat 26859481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 204 - 322
Target Start/End: Complemental strand, 29307487 - 29307370
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    ||||||||| ||||||||||||||| |||||| ||||||||| ||||||||| ||||||||||||||||        ||||||||  ||||| |||||||    
T  29307487 ggcttaattgcacttttggtcctcgtgttttgacctactcacgaaactggtcctgcccttttaaaacag-aacaaaacggtccttcaattatcatttttg 29307389  T
Q  304 ttgcattttttgtcctacc 322  Q
    |||||||||| ||||||||    
T  29307388 ttgcatttttcgtcctacc 29307370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 204 - 322
Target Start/End: Complemental strand, 29870164 - 29870047
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    ||||||||||||||||||||||||| |||||||||||||||  ||||||||| |||| |||||||||||        ||||||||  ||||| |||||||    
T  29870164 ggcttaattacacttttggtcctcgtgttttggcctactcatgaaactggtcctgccattttaaaacag-aacaaaacggtccttcaattatcatttttg 29870066  T
Q  304 ttgcattttttgtcctacc 322  Q
    |||||||||| ||||||||    
T  29870065 ttgcatttttcgtcctacc 29870047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 205 - 322
Target Start/End: Original strand, 5539817 - 5539933
Alignment:
Q  205 gcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgt 304  Q
    |||||||||||||||||||||||| |||||||||||||||| ||| ||||| ||||||||||||||||        ||||||||  ||||| ||||||||    
T  5539817 gcttaattacacttttggtcctcgtgttttggcctactcacgaaattggtcctgcccttttaaaacag-aacaaaacggtccttcaattatcatttttgt 5539915  T
Q  305 tgcattttttgtcctacc 322  Q
    || |||||| ||||||||    
T  5539916 tgtatttttcgtcctacc 5539933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 8679086 - 8679018
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||||||||||||||||| ||||||||||||||||  |||||||| ||||||||||||||||    
T  8679086 ggcttaattacacttttggtcctcgtgttttggcctactcacggaactggtcctgcccttttaaaacag 8679018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 39154566 - 39154498
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaaca 271  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||| |||||||||||    
T  39154566 aggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgctcttttaaaaca 39154498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 4636515 - 4636448
Alignment:
Q  205 gcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||| || ||||||||||||||||    
T  4636515 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactgatcctgcccttttaaaacag 4636448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 202 - 322
Target Start/End: Complemental strand, 9019510 - 9019391
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||||  |||| |||||||||||        ||||| ||  ||||| |||||    
T  9019510 taggcttaattacacttttggtcctcgtgttttgacctactcacaaaactggttctgccattttaaaacag-aacaaaacggtcattcaattatcatttt 9019412  T
Q  302 tgttgcattttttgtcctacc 322  Q
    |||||||||||| ||||||||    
T  9019411 tgttgcatttttcgtcctacc 9019391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 194 - 322
Target Start/End: Original strand, 26859049 - 26859176
Alignment:
Q  194 ttatattgtaggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcatt 293  Q
    ||||||| | ||||||||||||||||||||||| | ||||||||||||| || ||||||||| |||| |||||||||||        ||||||||  |||    
T  26859049 ttatatttttggcttaattacacttttggtccttgtgttttggcctactaacgaaactggtcctgccattttaaaacag-aacaaaacggtccttcaatt 26859147  T
Q  294 ataatttttgttgcattttttgtcctacc 322  Q
    || ||||||||||||||||| ||||||||    
T  26859148 atcatttttgttgcatttttcgtcctacc 26859176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 207 - 328
Target Start/End: Complemental strand, 5963120 - 5963000
Alignment:
Q  207 ttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgttg 306  Q
    |||||||||||||||||||||| |||||||||||||||| |||||| || ||||||||||||| ||        | ||| ||  ||||| ||||||||||    
T  5963120 ttaattacacttttggtcctcgtgttttggcctactcacgaaactgatcatgcccttttaaaatag-aacaaaacagtctttcaattatcatttttgttg 5963022  T
Q  307 cattttttgtcctaccccccat 328  Q
    ||||||| ||||||||||||||    
T  5963021 catttttcgtcctaccccccat 5963000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 207 - 328
Target Start/End: Original strand, 15173099 - 15173219
Alignment:
Q  207 ttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgttg 306  Q
    |||||||||||||||||||||| |||||||||||||||| ||||| ||| |||||||||||||  |        |||| |||  ||||| ||||||||||    
T  15173099 ttaattacacttttggtcctcgtgttttggcctactcacgaaactagtcctgcccttttaaaattg-aacaaaacggttcttcaattatcatttttgttg 15173197  T
Q  307 cattttttgtcctaccccccat 328  Q
    ||||||| ||||||||||||||    
T  15173198 catttttcgtcctaccccccat 15173219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 33143925 - 33143985
Alignment:
Q  212 tacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||    
T  33143925 tacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaacag 33143985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 21856044 - 21856110
Alignment:
Q  206 cttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||||||||||||||| ||||||  |||||||| ||||||||| ||||||||||||||||    
T  21856044 cttaattacacttttggtcctcgtgttttgatctactcacgaaactggtcctgcccttttaaaacag 21856110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 197 - 328
Target Start/End: Original strand, 39154012 - 39154142
Alignment:
Q  197 tattgtaggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattata 296  Q
    |||| ||| ||||||||||||||||||| ||  |||||||| ||||||| |||||| || ||||||||||||||||        |||||||   |||||     
T  39154012 tattatagacttaattacacttttggtcatcatgttttggcatactcacgaaactgatcatgcccttttaaaacag-aacaaaacggtcctgcaattatc 39154110  T
Q  297 atttttgttgcattttttgtcctaccccccat 328  Q
    ||||||||||||||||| ||||||||||||||    
T  39154111 atttttgttgcatttttcgtcctaccccccat 39154142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 52268289 - 52268358
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||||||||||||||||||  ||||||||| ||||| ||| ||||| ||||||||||||||||    
T  52268289 aggcttaattacacttttggtcctcgtattttggcctgctcacgaaattggtcctgcccttttaaaacag 52268358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 21856588 - 21856520
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||||||||||||||||| |||||||||||||||  |||||| || |||| |||||||||||    
T  21856588 ggcttaattacacttttggtcctcgtgttttggcctactcatgaaactgatcctgcctttttaaaacag 21856520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 204 - 328
Target Start/End: Original strand, 17433216 - 17433339
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    ||||||||||||||||||||||||  |||||||||||||||  ||||||  | ||||||||||||||||        ||||||||  | ||| |||||||    
T  17433216 ggcttaattacacttttggtcctcatgttttggcctactcatgaaactgaccatgcccttttaaaacag-aacaaaacggtccttcaagtatcatttttg 17433314  T
Q  304 ttgcattttttgtcctaccccccat 328  Q
    ||||||||||  |||||||||||||    
T  17433315 ttgcatttttcatcctaccccccat 17433339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 206 - 269
Target Start/End: Original strand, 47826966 - 47827029
Alignment:
Q  206 cttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaa 269  Q
    ||||||||||||||||||||||| ||||||| |||||||| ||| ||||| |||||||||||||    
T  47826966 cttaattacacttttggtcctcgtgttttggtctactcacgaaaatggtcatgcccttttaaaa 47827029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 272
Target Start/End: Complemental strand, 2733504 - 2733434
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||||| |||||||||||| | ||||||||||| || | ||| ||||| ||||||||||||||||    
T  2733504 taggcttaattatacttttggtccttgtgttttggcctattcgcgaaattggtcctgcccttttaaaacag 2733434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 5962574 - 5962646
Alignment:
Q  200 tgtaggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||| ||||||||||| |||||||||||| ||| ||| ||| |||| |||||||||  |||||||||||||||    
T  5962574 tgtaagcttaattacatttttggtcctcgtgttatggtctattcacgaaactggtccggcccttttaaaacag 5962646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 272
Target Start/End: Complemental strand, 47827107 - 47827065
Alignment:
Q  230 gttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||||||||| ||| ||||| ||||||||||||||||    
T  47827107 gttttggcctactcacgaaaatggtcatgcccttttaaaacag 47827065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 272
Target Start/End: Complemental strand, 52269291 - 52269225
Alignment:
Q  206 cttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||||||||||||||| |||||| | ||||||  |||  |||  ||||||||||||||||    
T  52269291 cttaattacacttttggtcctcgtgttttgacttactcatgaaatcggttctgcccttttaaaacag 52269225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 152
Target Start/End: Original strand, 12850838 - 12850927
Alignment:
Q  64 ctctaattccagaagagaac-ttcatttgagaataagggatggttcatctttaaaacatgtttggtaagctcttttgagttgttgctttt 152  Q
    |||||||||||| |||| || |||||||  ||||  ||||||||||||| ||  |||  ||||||||  |||||||||||||||||||||    
T  12850838 ctctaattccagtagaggaccttcattttggaatcggggatggttcatccttcgaacgagtttggtattctcttttgagttgttgctttt 12850927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 48)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 202 - 321
Target Start/End: Complemental strand, 23494990 - 23494872
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||        ||||||||  ||||| |||||    
T  23494990 taggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaacag-aacaaaacggtccttcaattatcatttt 23494892  T
Q  302 tgttgcattttttgtcctac 321  Q
    |||||||||||| |||||||    
T  23494891 tgttgcatttttcgtcctac 23494872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 202 - 322
Target Start/End: Original strand, 15523233 - 15523352
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||        ||||||||  ||||| |||||    
T  15523233 taggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaacag-aacaaaacggtccttcaattattatttt 15523331  T
Q  302 tgttgcattttttgtcctacc 322  Q
    | |||||||||| ||||||||    
T  15523332 ttttgcatttttcgtcctacc 15523352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 197 - 328
Target Start/End: Original strand, 25937663 - 25937793
Alignment:
Q  197 tattgtaggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattata 296  Q
    |||| |||||||||||||| |||||||||||| ||||| |||||||||| ||||||||| ||||||||||||||||        ||||||||  |||||     
T  25937663 tattttaggcttaattacatttttggtcctcgtgttttagcctactcacgaaactggtcctgcccttttaaaacag-aacaaaacggtccttcaattatc 25937761  T
Q  297 atttttgttgcattttttgtcctaccccccat 328  Q
    |||||||||||||||||||||||  |||||||    
T  25937762 atttttgttgcattttttgtcctgtcccccat 25937793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 16318322 - 16318253
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||    
T  16318322 aggcttaattacacttttggtcctcgtgttttggcctactcacaaaactgatcctgcccttttaaaacag 16318253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 204 - 322
Target Start/End: Original strand, 25447247 - 25447364
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    ||||||||||||||||||||||||| |||||||||||||||  ||||||||| ||||||||||||||||        ||||||||  ||||| |||||||    
T  25447247 ggcttaattacacttttggtcctcgtgttttggcctactcatgaaactggtcctgcccttttaaaacag-aacaaaacggtccttcaattatcatttttg 25447345  T
Q  304 ttgcattttttgtcctacc 322  Q
    |||||||||| ||||||||    
T  25447346 ttgcatttttcgtcctacc 25447364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 202 - 328
Target Start/End: Complemental strand, 25447783 - 25447658
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||| ||| |||||||||||||||| ||||||||| ||||||||||||||||        ||||| ||  ||||| |||||    
T  25447783 taggcttaattacacttttggtcttcgtgttttggcctactcacgaaactggtcctgcccttttaaaacag-aacaaaacggtctttcaattatcatttt 25447685  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    |||||||||||| ||||||||| ||||    
T  25447684 tgttgcatttttcgtcctaccctccat 25447658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 204 - 322
Target Start/End: Complemental strand, 45082969 - 45082852
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    ||||||||||||||||||||||||| |||||||| ||||||| ||||||||| ||||||||||||||||        ||||||||  ||||| |||||||    
T  45082969 ggcttaattacacttttggtcctcgtgttttggcttactcacgaaactggtcatgcccttttaaaacag-aacaaaacggtccttcaattatcatttttg 45082871  T
Q  304 ttgcattttttgtcctacc 322  Q
    |||||||||| ||||||||    
T  45082870 ttgcatttttcgtcctacc 45082852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 206 - 328
Target Start/End: Complemental strand, 46193948 - 46193827
Alignment:
Q  206 cttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgtt 305  Q
    ||||||||||||||||||||||| |||||||||||||||| ||| ||||| ||||||||||||||||        ||||||||  ||||| |||||| ||    
T  46193948 cttaattacacttttggtcctcgtgttttggcctactcacgaaattggtcctgcccttttaaaacag-aacaaaacggtccttcaattatcatttttatt 46193850  T
Q  306 gcattttttgtcctaccccccat 328  Q
    |||||||| ||||||||||||||    
T  46193849 gcatttttcgtcctaccccccat 46193827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 204 - 328
Target Start/End: Complemental strand, 11153692 - 11153569
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||| |||||||||||        || |||||  ||||| |||||||    
T  11153692 ggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgccattttaaaacag-aacaaaacgttccttcaattatcatttttg 11153594  T
Q  304 ttgcattttttgtcctaccccccat 328  Q
    |||||||||| ||||||||| ||||    
T  11153593 ttgcatttttcgtcctaccctccat 11153569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 203 - 322
Target Start/End: Original strand, 11153145 - 11153263
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattttt 302  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||||||||| ||        ||||||||  ||||| ||||||    
T  11153145 aggcttaattatacttttggtcctcgtgttttggcctactcacaaaattggtcatgcccttttaaaatag-aataaaacggtccttcaattatcattttt 11153243  T
Q  303 gttgcattttttgtcctacc 322  Q
    ||||||||||| ||||||||    
T  11153244 gttgcatttttcgtcctacc 11153263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 203 - 322
Target Start/End: Complemental strand, 25938217 - 25938099
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattttt 302  Q
    |||||||||||||||||||||||| | |||||||||||||||| ||| ||||| ||||||||||||||||        | ||||||  ||||| ||||||    
T  25938217 aggcttaattacacttttggtccttgtgttttggcctactcacgaaattggtcctgcccttttaaaacag-aacaaaacagtccttcaattatcattttt 25938119  T
Q  303 gttgcattttttgtcctacc 322  Q
    ||||||||||||||||||||    
T  25938118 gttgcattttttgtcctacc 25938099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 204 - 322
Target Start/End: Original strand, 46193405 - 46193522
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||| ||||| ||||||||||||||||         |||||||  ||||| |||||||    
T  46193405 ggcttaattacacttttggtcctcgtgttttggcctactcacgaaattggtcctgcccttttaaaacagaacaaaaa-ggtccttcaattatcatttttg 46193503  T
Q  304 ttgcattttttgtcctacc 322  Q
    |||||||||| ||||||||    
T  46193504 ttgcatttttcgtcctacc 46193522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 202 - 328
Target Start/End: Original strand, 12234327 - 12234452
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||  |||||||| || |||| ||||||||| ||||||||||||||||        ||||| ||  ||||| |||||    
T  12234327 taggcttaattacacttttggtcctcttgttttggcttattcacgaaactggtcctgcccttttaaaacag-aacaaaacggtcattcaattatcatttt 12234425  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    |||||||||||| ||||||||||||||    
T  12234426 tgttgcatttttcgtcctaccccccat 12234452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 204 - 322
Target Start/End: Complemental strand, 12234874 - 12234757
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    |||||||||| |||||||||||||| |||||||||||||||| |||||| || ||||||||||||||||        ||||||||  ||||| |||||||    
T  12234874 ggcttaattatacttttggtcctcgtgttttggcctactcacgaaactgatcatgcccttttaaaacag-aacaaaacggtccttcaattatcatttttg 12234776  T
Q  304 ttgcattttttgtcctacc 322  Q
    |||||||||| ||||||||    
T  12234775 ttgcatttttcgtcctacc 12234757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 18751602 - 18751667
Alignment:
Q  207 ttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||    
T  18751602 ttaattacacttttggtcctcgtgttttggcctactcataaaactggtcatgcccttttaaaacag 18751667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 204 - 322
Target Start/End: Original strand, 22434179 - 22434296
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    ||||||||||||||||||||||||| |||||||| ||||||| ||||||||| ||||||||||||||||        ||||||||  ||||| |||||||    
T  22434179 ggcttaattacacttttggtcctcgtgttttggcatactcacgaaactggtcctgcccttttaaaacag-aacaaaacggtccttcaattatcatttttg 22434277  T
Q  304 ttgcattttttgtcctacc 322  Q
    ||| |||||| ||||||||    
T  22434278 ttgtatttttcgtcctacc 22434296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 206 - 328
Target Start/End: Original strand, 23494445 - 23494566
Alignment:
Q  206 cttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgtt 305  Q
    |||||||||| |||||||||||| |||||||||||||||| ||||| ||| ||||||||||||||||        ||||||||  ||||| |||||| ||    
T  23494445 cttaattacatttttggtcctcgtgttttggcctactcacgaaactagtcctgcccttttaaaacag-aacaaagcggtccttcaattatcatttttatt 23494543  T
Q  306 gcattttttgtcctaccccccat 328  Q
    |||||||| ||||||||||||||    
T  23494544 gcatttttcgtcctaccccccat 23494566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 206 - 328
Target Start/End: Original strand, 33109686 - 33109807
Alignment:
Q  206 cttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgtt 305  Q
    |||||||||| |||||||||||| |||||||| ||||||| ||||||||| ||| ||||||||||||        ||||||||  ||||| |||||||||    
T  33109686 cttaattacatttttggtcctcgtgttttggcatactcacgaaactggtcctgctcttttaaaacag-aacaaaacggtccttcaattatcatttttgtt 33109784  T
Q  306 gcattttttgtcctaccccccat 328  Q
    |||||||| ||||||||||||||    
T  33109785 gcatttttcgtcctaccccccat 33109807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 202 - 322
Target Start/End: Complemental strand, 20471058 - 20470939
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| ||||||||||||| || ||||||||| | ||||||||||||||        ||||| ||  ||||| |||||    
T  20471058 taggcttaattacacttttggtcctcgtgttttggcctacttacgaaactggtcattcccttttaaaacag-aacaaaacggtcattcaattatcatttt 20470960  T
Q  302 tgttgcattttttgtcctacc 322  Q
    |||||||||||| ||||||||    
T  20470959 tgttgcatttttcgtcctacc 20470939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 206 - 272
Target Start/End: Complemental strand, 18764063 - 18763997
Alignment:
Q  206 cttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||| || |||||||||||||    
T  18764063 cttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcatgtccttttaaaacag 18763997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 207 - 322
Target Start/End: Complemental strand, 48526723 - 48526609
Alignment:
Q  207 ttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgttg 306  Q
    ||||||| |||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||        ||||||||  ||||| | ||||||||    
T  48526723 ttaattatacttttggtcctcgtgttttggtctactcacgaaactggtcttgcccttttaaaacag-aacaaaacggtccttcaattatcacttttgttg 48526625  T
Q  307 cattttttgtcctacc 322  Q
    ||||||| ||||||||    
T  48526624 catttttcgtcctacc 48526609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 199 - 269
Target Start/End: Complemental strand, 54995617 - 54995547
Alignment:
Q  199 ttgtaggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaa 269  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||| |||||| || |||||||||||||    
T  54995617 ttgtaggtttaattacacttttggtcctcgtgttttggcctactcacgaaactgatcatgcccttttaaaa 54995547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 15523780 - 15523656
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattttt 302  Q
    |||||||||||||||||||||| ||| ||||||| |||||||| ||||||||| |||||||||||||||          |||||||  | ||| ||||||    
T  15523780 aggcttaattacacttttggtcatcgtgttttgggctactcacgaaactggtcctgcccttttaaaaca-aaacaaaatggtccttcaagtatcattttt 15523682  T
Q  303 gttgcattttttgtcctaccccccat 328  Q
    ||||||||||| ||||||||||||||    
T  15523681 gttgcatttttcgtcctaccccccat 15523656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 206 - 328
Target Start/End: Complemental strand, 38962362 - 38962241
Alignment:
Q  206 cttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgtt 305  Q
    |||||||||| |||||||||||| ||||||| ||| |||| |||||||||  |||||||||||||||        ||||||||  ||||| |||||||||    
T  38962362 cttaattacatttttggtcctcgtgttttggtctattcacgaaactggtccggcccttttaaaacag-aacaaaacggtccttcaattatcatttttgtt 38962264  T
Q  306 gcattttttgtcctaccccccat 328  Q
    |||||||| ||||||||||||||    
T  38962263 gcatttttcgtcctaccccccat 38962241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 271
Target Start/End: Complemental strand, 51021342 - 51021273
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaaca 271  Q
    |||||||||||||||||||| |||||| |||||||||||||||| ||| ||||| |||||||||||||||    
T  51021342 taggcttaattacacttttgatcctcgtgttttggcctactcacgaaattggtcctgcccttttaaaaca 51021273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 202 - 322
Target Start/End: Complemental strand, 33110011 - 33109892
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||  |||||||||| ||||| ||| ||||| |||||||||||||||         ||||||||  ||||| |||||    
T  33110011 taggcttaattacacttttggtcctcatgttttggcctgctcacgaaattggtcctgcccttttaaaaca-taacaaaacggtccttcaattatcatttt 33109913  T
Q  302 tgttgcattttttgtcctacc 322  Q
    |||||||||||| ||||||||    
T  33109912 tgttgcatttttcgtcctacc 33109892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 322
Target Start/End: Original strand, 54995067 - 54995186
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    |||| |||||||||||||||||||||| || ||||||||||||| ||||| ||| | ||||||||||||||        ||||||||  ||||| |||||    
T  54995067 taggtttaattacacttttggtcctcgtgtattggcctactcacgaaactagtcctacccttttaaaacag-aacaaaacggtccttcaattatcatttt 54995165  T
Q  302 tgttgcattttttgtcctacc 322  Q
    |||||||||||| ||||||||    
T  54995166 tgttgcatttttcgtcctacc 54995186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 206 - 328
Target Start/End: Original strand, 4219559 - 4219680
Alignment:
Q  206 cttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgtt 305  Q
    |||||||||| |||||||||||| |||||||||||||||| ||||||||| |||| |||||||| |         | ||||||  ||||| |||||||||    
T  4219559 cttaattacatttttggtcctcgtgttttggcctactcacgaaactggtcctgccattttaaaata-aaacaaaacagtccttcaattatcatttttgtt 4219657  T
Q  306 gcattttttgtcctaccccccat 328  Q
    |||||||| ||||||||||||||    
T  4219658 gcatttttcgtcctaccccccat 4219680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 202 - 272
Target Start/End: Complemental strand, 4220106 - 4220036
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||| |||||||||||||||||||||| |||||||||||||||| |||||| || ||| ||||||||||||    
T  4220106 taggtttaattacacttttggtcctcgtgttttggcctactcacgaaactgatcctgctcttttaaaacag 4220036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 2118295 - 2118360
Alignment:
Q  206 cttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaaca 271  Q
    ||||||||||||||||||||| | |||||||||||||||| ||| ||||| |||||||||||||||    
T  2118295 cttaattacacttttggtccttgtgttttggcctactcacgaaattggtcctgcccttttaaaaca 2118360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 10258433 - 10258364
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||||||||||||||||||| ||| |||||||||||  ||| ||||| ||||||||||||||||    
T  10258433 aggcttaattacacttttggtcctcgtgttgtggcctactcaggaaattggtcctgcccttttaaaacag 10258364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 203 - 325
Target Start/End: Original strand, 48526195 - 48526316
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattttt 302  Q
    ||||||||||||||||||||| |||| |||||| ||||||||  |||||||   ||||||||||||||||        ||||||||  ||||| ||||||    
T  48526195 aggcttaattacacttttggttctcgtgttttgacctactcatgaaactggctctgcccttttaaaacag-aacaaaacggtccttcaattatcattttt 48526293  T
Q  303 gttgcattttttgtcctaccccc 325  Q
    ||||||||||| |||||||||||    
T  48526294 gttgcatttttcgtcctaccccc 48526316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 202 - 328
Target Start/End: Original strand, 51020795 - 51020920
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    |||||||||||||||||||| |||||  ||||||||  | |||| ||||||||| ||||||||||||||||        || |||||  ||||| |||||    
T  51020795 taggcttaattacacttttgatcctcatgttttggctaattcactaaactggtcctgcccttttaaaacag-aacaaaacgatccttcaattatcatttt 51020893  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    |||||||||||| ||||||||||||||    
T  51020894 tgttgcatttttcgtcctaccccccat 51020920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 20958403 - 20958336
Alignment:
Q  205 gcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||||||||| |||||||  ||||||||||||||| ||| ||||| ||||||||||||||||    
T  20958403 gcttaattacacttttagtcctcgtattttggcctactcacgaaaatggtcctgcccttttaaaacag 20958336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 268
Target Start/End: Complemental strand, 22434723 - 22434657
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaa 268  Q
    |||| ||||||||| |||||||||||| |||||||||||||||| ||||||||| |||| |||||||    
T  22434723 taggtttaattacatttttggtcctcgtgttttggcctactcacgaaactggtcctgccattttaaa 22434657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 35363146 - 35363081
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaa 269  Q
    |||||||||||||||||| |||||| |||||||||||||||| ||||||||  ||| |||||||||    
T  35363146 ggcttaattacacttttgatcctcgtgttttggcctactcacgaaactggttctgctcttttaaaa 35363081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 325
Target Start/End: Original strand, 45082430 - 45082551
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    |||| |||||||| ||||||||| ||| ||||||| |||||||| || ||||| |||||||||||||| ||        ||||||||  ||||| |||||    
T  45082430 taggtttaattacgcttttggtcatcgtgttttggtctactcacgaa-ctggttttgcccttttaaaatag-aacaaaacggtccttcaattatcatttt 45082527  T
Q  302 tgttgcattttttgtcctaccccc 325  Q
    |||||||||||| |||||||||||    
T  45082528 tgttgcatttttcgtcctaccccc 45082551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 22170482 - 22170359
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattttt 302  Q
    |||||||||||||||||||||||||| |||||| |||||| || ||| | ||| |||| ||||||||||         ||||| ||  ||||| ||||||    
T  22170482 aggcttaattacacttttggtcctcgtgttttgacctactgacgaaa-ttgtcctgcctttttaaaaca-aaacaaaacggtcattcaattatcattttt 22170385  T
Q  303 gttgcattttttgtcctaccccccat 328  Q
    ||||||||||| ||||||||||||||    
T  22170384 gttgcatttttcgtcctaccccccat 22170359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 48293586 - 48293635
Alignment:
Q  196 atattgtaggcttaattacacttttggtcctcgagttttggcctactcac 245  Q
    ||||| ||||||||||||||||||||||||||| |||||||| |||||||    
T  48293586 atattataggcttaattacacttttggtcctcgtgttttggcttactcac 48293635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 325
Target Start/End: Complemental strand, 43243807 - 43243705
Alignment:
Q  222 gtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgttgcattttttgtcctac 321  Q
    ||||||| |||||||||||||||| ||| ||||| ||||||||||||||||          || |||  ||||| |||||||||||||||||||||||||    
T  43243807 gtcctcgtgttttggcctactcacgaaaatggtcatgcccttttaaaacagaacaaaat-tgttcttcaattatcatttttgttgcattttttgtcctac 43243709  T
Q  322 cccc 325  Q
    ||||    
T  43243708 cccc 43243705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 44890518 - 44890585
Alignment:
Q  205 gcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||| |||||||||| | |||||| |||| |||| ||| ||||| ||||||||||||||||    
T  44890518 gcttaattacaattttggtccttgtgttttgacctattcacgaaaatggtcatgcccttttaaaacag 44890585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 325
Target Start/End: Complemental strand, 2118837 - 2118720
Alignment:
Q  207 ttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgttg 306  Q
    |||||||||||||||||| ||| |||||||||| ||||  ||||||||| |  ||||||||||||         ||||| ||  ||||| ||||||||||    
T  2118837 ttaattacacttttggtcttcgtgttttggcctgctcatgaaactggtcctatccttttaaaaca-taacaaaacggtcattcaattatcatttttgttg 2118739  T
Q  307 cattttttgtcctaccccc 325  Q
    ||||||| |||||||||||    
T  2118738 catttttcgtcctaccccc 2118720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 271
Target Start/End: Original strand, 48708293 - 48708362
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaaca 271  Q
    ||||||||||||||||||||||||  | |||||||||||  ||| ||| || || |||||||||||||||    
T  48708293 taggcttaattacacttttggtccatgtgttttggcctaaccacgaaaatgatcctgcccttttaaaaca 48708362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 20957196 - 20957256
Alignment:
Q  211 ttacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaaca 271  Q
    ||||| ||||||||||||||||||||| ||||||| ||| ||||| | | |||||||||||    
T  20957196 ttacatttttggtcctcgagttttggcttactcacgaaaatggtcatactcttttaaaaca 20957256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 44892692 - 44892625
Alignment:
Q  205 gcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||| | |||||||||||| |||||| ||||||||| ||| ||||  |||| |||||||||||    
T  44892692 gcttaattatatttttggtcctcgtgttttgacctactcacgaaaatggttctgccattttaaaacag 44892625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 48295088 - 48295021
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaaca 271  Q
    |||||||||||| |||||||| ||| ||||||  |||||||| ||| ||||||||||  |||||||||    
T  48295088 ggcttaattacatttttggtcatcgtgttttgatctactcacgaaattggtcttgcctctttaaaaca 48295021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 43281317 - 43281267
Alignment:
Q  222 gtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||| |||||||||||||||| ||| ||||| |||| |||||||||||    
T  43281317 gtcctcgtgttttggcctactcacgaaaatggtcatgccattttaaaacag 43281267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 33689827 - 33689880
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtc 255  Q
    ||||||||||||||||||||||||| |  ||||| || |||||||||| |||||    
T  33689827 taggcttaattacacttttggtccttgcattttgaccaactcacaaaattggtc 33689880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0951 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: scaffold0951
Description:

Target: scaffold0951; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 202 - 328
Target Start/End: Original strand, 1665 - 1790
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||  |||||||||||||||| ||||||||| ||||||||||||||||         | |||||  ||||| |||||    
T  1665 taggcttaattacacttttggtcctcctgttttggcctactcacgaaactggtcctgcccttttaaaacagaacaaaat-gttccttcaattatcatttt 1763  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    |||||||||||| ||||||||||||||    
T  1764 tgttgcatttttcgtcctaccccccat 1790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0951; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 202 - 322
Target Start/End: Complemental strand, 2214 - 2095
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| ||||||||||||| || ||||||||| ||||||||||||||||        ||||| ||  ||||| |||||    
T  2214 taggcttaattacacttttggtcctcgtgttttggcctacttacgaaactggtcctgcccttttaaaacag-aacaaaacggtcattcaattatcatttt 2116  T
Q  302 tgttgcattttttgtcctacc 322  Q
    |||||||||||| ||||||||    
T  2115 tgttgcatttttcgtcctacc 2095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 193 - 322
Target Start/End: Complemental strand, 11179 - 11051
Alignment:
Q  193 attatattgtaggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcat 292  Q
    |||||||||  ||||||||||||||||||||||||| ||||||||||||| || ||||||||| |||||||||||||||         ||||||||  ||    
T  11179 attatattgatggcttaattacacttttggtcctcgtgttttggcctacttacgaaactggtcctgcccttttaaaaca-taacaaaacggtccttcaat 11081  T
Q  293 tataatttttgttgcattttttgtcctacc 322  Q
    ||| ||||||||||||||||| ||||||||    
T  11080 tatcatttttgttgcatttttcgtcctacc 11051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 272
Target Start/End: Original strand, 10640 - 10689
Alignment:
Q  223 tcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||| |||||||||||||||  ||||||||| ||||||||||||||||    
T  10640 tcctcgtgttttggcctactcatgaaactggtcctgcccttttaaaacag 10689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 207 - 325
Target Start/End: Complemental strand, 10414 - 10297
Alignment:
Q  207 ttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgttg 306  Q
    |||||||||||||||||||||| ||||||| |||||||| |||||||| || ||||||||||||||        ||||||||  ||||| ||||||||||    
T  10414 ttaattacacttttggtcctcgtgttttggtctactcacgaaactggtgtttcccttttaaaacag-aacaaaacggtccttcaattatcatttttgttg 10316  T
Q  307 cattttttgtcctaccccc 325  Q
    ||||||| |||||||||||    
T  10315 catttttcgtcctaccccc 10297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 9935 - 9995
Alignment:
Q  207 ttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaa 267  Q
    ||||||||| |||||||||||| ||||| ||||| |||| |||||| ||||||||||||||    
T  9935 ttaattacatttttggtcctcgtgttttagcctattcacgaaactgatcttgcccttttaa 9995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 202 - 328
Target Start/End: Complemental strand, 134220 - 134095
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttt 301  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||| ||| ||||||||||| ||||        || |||||  ||||  |||||    
T  134220 taggcttaattacacttttggtcctcgtgttttggcctactcacgaaactagtcatgcccttttaatacag-aacaaaacgatccttcaattaacatttt 134122  T
Q  302 tgttgcattttttgtcctaccccccat 328  Q
    |||||||||||| ||||||||||||||    
T  134121 tgttgcatttttcgtcctaccccccat 134095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 19166 - 19098
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||| ||| ||||||||||||||||    
T  19166 ggcttaattacacttttggtcctcgtgttttggcctactcacgaaacttgtcctgcccttttaaaacag 19098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 18834 - 18902
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaaca 271  Q
    |||||| |||||||||||||||||   |||||||||||||||| |||||||||||||||||||||||||    
T  18834 aggcttcattacacttttggtccttctgttttggcctactcacgaaactggtcttgcccttttaaaaca 18902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 207 - 320
Target Start/End: Complemental strand, 64847 - 64735
Alignment:
Q  207 ttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgttg 306  Q
    |||||||||||||||||||||| |||||||| ||||||| |||||||||  |||||||||||||||        ||||||||| ||||| ||||||||||    
T  64847 ttaattacacttttggtcctcgtgttttggcatactcacgaaactggtcccgcccttttaaaacag-aacaaaacggtcctttaattatcatttttgttg 64749  T
Q  307 cattttttgtccta 320  Q
    ||||||| ||||||    
T  64748 catttttcgtccta 64735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 64301 - 64425
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataattttt 302  Q
    |||||||||||||||||||||||||| |||||| | ||||||| |||||| || || |||||||||||||        ||||||||  ||||| ||||||    
T  64301 aggcttaattacacttttggtcctcgtgttttgacatactcacgaaactgatcctgaccttttaaaacag-aacaaaacggtccttcaattatcattttt 64399  T
Q  303 gttgcattttttgtcctaccccccat 328  Q
    ||||||||||| ||| ||||||||||    
T  64400 gttgcatttttcgtcataccccccat 64425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1223 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold1223
Description:

Target: scaffold1223; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 206 - 328
Target Start/End: Original strand, 755 - 875
Alignment:
Q  206 cttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgtt 305  Q
    ||||||||||||||||||| ||| |||||||||||||||| | ||||||| ||||||||||||||||        ||||||||  ||||| | |||||||    
T  755 cttaattacacttttggtcttcgtgttttggcctactcacgatactggtcctgcccttttaaaacag-aacaaaacggtccttcaattatca-ttttgtt 852  T
Q  306 gcattttttgtcctaccccccat 328  Q
    |||||||| ||||||||||||||    
T  853 gcatttttcgtcctaccccccat 875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1223; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 204 - 322
Target Start/End: Complemental strand, 1286 - 1169
Alignment:
Q  204 ggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttg 303  Q
    ||||||||||||||||| ||||||| |||||||| ||||||| ||||||||| ||||||||||||||||        ||||||||  ||||| |||||||    
T  1286 ggcttaattacacttttagtcctcgtgttttggcttactcacgaaactggtcctgcccttttaaaacag-aacaaaacggtccttcaattatcatttttg 1188  T
Q  304 ttgcattttttgtcctacc 322  Q
    |||||| ||| ||||||||    
T  1187 ttgcatctttcgtcctacc 1169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 28789 - 28720
Alignment:
Q  203 aggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||| ||||||||||||||||| ||| ||||||||||||| || ||||||||| ||||||||||||||||    
T  28789 aggcataattacacttttggtcatcgtgttttggcctacttacgaaactggtcatgcccttttaaaacag 28720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1585 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold1585
Description:

Target: scaffold1585; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 568 - 635
Alignment:
Q  205 gcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    ||||||||||||||||| |||||| |||||||||||||||| ||| || || ||||||||||||||||    
T  568 gcttaattacacttttgatcctcgtgttttggcctactcacgaaaatgatcatgcccttttaaaacag 635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 269
Target Start/End: Original strand, 61026 - 61093
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaa 269  Q
    ||||||||| |||||||||| |||||| |||||||||||||||| ||| || || |||| ||||||||    
T  61026 taggcttaagtacacttttgatcctcgtgttttggcctactcacgaaaatgatcctgccattttaaaa 61093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 269
Target Start/End: Complemental strand, 62000 - 61938
Alignment:
Q  207 ttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaa 269  Q
    ||||||||||||||| |||||| ||||||| |||||||| ||| ||||| | |||||||||||    
T  62000 ttaattacacttttgatcctcgtgttttggtctactcacgaaaatggtcctacccttttaaaa 61938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 272
Target Start/End: Complemental strand, 42705 - 42635
Alignment:
Q  202 taggcttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacag 272  Q
    |||||||||||| |||||||| ||||| ||||||| |||||||  |||||| |  ||||||||||||||||    
T  42705 taggcttaattatacttttggncctcgtgttttggtctactcaggaaactgattctgcccttttaaaacag 42635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 322
Target Start/End: Original strand, 42172 - 42286
Alignment:
Q  207 ttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaacagnnnnnnnncggtcctttcattataatttttgttg 306  Q
    |||||||||||||| || |||| ||||||| ||| |||| |||||| || |||| |||||||||||        ||||| ||  ||||| ||||||||||    
T  42172 ttaattacacttttagttctcgtgttttggtctaatcacgaaactgatcctgccattttaaaacag-aacaaaacggtcattcaattatcatttttgttg 42270  T
Q  307 cattttttgtcctacc 322  Q
    ||||||||||| ||||    
T  42271 cattttttgtcatacc 42286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 271
Target Start/End: Complemental strand, 8551 - 8487
Alignment:
Q  207 ttaattacacttttggtcctcgagttttggcctactcacaaaactggtcttgcccttttaaaaca 271  Q
    |||||||||||||||||| ||  ||||||| ||||| || ||||||||| | |||||||||||||    
T  8551 ttaattacacttttggtcttcatgttttggtctacttacgaaactggtcctacccttttaaaaca 8487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University