View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18790_high_17 (Length: 333)
Name: NF18790_high_17
Description: NF18790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18790_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 185 - 323
Target Start/End: Complemental strand, 3851540 - 3851402
Alignment:
| Q |
185 |
ttacatatatttcaagtcctatgaaagtgaagactagtgcttcaaattttagagcacttgtgcaagagctcacaggtcaagactcaaatgttgctgatat |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3851540 |
ttacatatatttcaagtcctatgaaagtgaagactagtgcttcaaattttagagcacttgtgcaagagctcacaggtcaagactcaaatgttgctgatat |
3851441 |
T |
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| Q |
285 |
gtttgtggaagttaatgattttgttcatgttgatgatgt |
323 |
Q |
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| T |
3851440 |
gtttgtggaagttaatgattttgttcatgttgatgatgt |
3851402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 3851704 - 3851579
Alignment:
| Q |
21 |
atattcatcaaacaatcaaaaacactaatattttgaatctcttgttcnnnnnnnnnnnnnnnnnnnnnnngagatgatgaaaagtgagataaacatgctt |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3851704 |
atattcatcaaacaatcaaaaacactaatattttgaatctcttgttctttcttttttttgttctttttttgagatgatgaaaagtgagataaacatgctt |
3851605 |
T |
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| Q |
121 |
ggtgttaacaaccatgtgatgaaggg |
146 |
Q |
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| T |
3851604 |
ggtgttaacaatcatgttatgaaggg |
3851579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 185 - 281
Target Start/End: Original strand, 14917390 - 14917486
Alignment:
| Q |
185 |
ttacatatatttcaagtcctatgaaagtgaagactagtgcttcaaattttagagcacttgtgcaagagctcacaggtcaagactcaaatgttgctga |
281 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||||||||| ||||| || |||||||| || || || |||||||| ||||||||||| |
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| T |
14917390 |
ttacatatatttcaagtccagtgaaagtgaagactaatgcttcaaatttcagagccctagtgcaagaactaactggccaagactccaatgttgctga |
14917486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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