View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18790_high_2 (Length: 663)
Name: NF18790_high_2
Description: NF18790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18790_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 597; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 23 - 647
Target Start/End: Complemental strand, 48644854 - 48644230
Alignment:
| Q |
23 |
tttctaacacgtactgaacaatcatcgtatagaaacttgtgaacaatcctaagactctttgtcaaaacacattcctcccacgttttctccttaagcacca |
122 |
Q |
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| T |
48644854 |
tttctaacacgcactgaacaatcatcgtatagaaacttgtgaacaatcctaagactctttgtcaaaacacaatcctcccaagttttctccttaagcacca |
48644755 |
T |
|
| Q |
123 |
cctccgtagcatcaagacggtgcatgttcctcttccacataccataaagcctatgaatcttttgaacttgtctatttgcaagcttaatattatttatttt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48644754 |
cctccgtagcatcaagacggtgcatgttcctcttccacataccataaagcctatgaatcttttgaacttgtctatttgcaagcttaatattatttatttt |
48644655 |
T |
|
| Q |
223 |
aagagcatcaatagcaacttctagaagcttcttcatggttctttcatcaacttttccttctaactcagctctaaaaaattggtcaaattcaggtacacca |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48644654 |
aagagcatcaatagcaacttctagaagcttcttcatggttctttcatcaacttttccttctaactcagctctaaaaaattggtcaaattcaggtacacca |
48644555 |
T |
|
| Q |
323 |
atggctcttcgtatccctcttgtataatcatgattttctttgttaaatatttcacgaacttcatcaacttgacctgcttcaatcatccgatccacacgtg |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
48644554 |
atggctcttcgtatccctcttgtataatcatgattttctttgttaaatatttcacgaacttcgtcaacttgacctgcttcaatcatccgatccacacgtg |
48644455 |
T |
|
| Q |
423 |
tggataaagatgattggagcacttgacgtgaaacatcaacccaaagaaaacaacattcataccttgtatgaaactcatgatgatgattaaccaaagcttc |
522 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48644454 |
tggataaagatgattggagtacttgacgtgaaacatcaacccaaagaaaacaacattcataccttgtatgaaactcatgatgatgattaaccaaagcttc |
48644355 |
T |
|
| Q |
523 |
aatgtacgaatttgatccacctgctataataggtaacccatctctggcgacgatggagtcagtagccatcgtcgcctgttcacaaaactccttggatgtg |
622 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
48644354 |
aatgtacgaatttgatccacctgctataataggtaacccatctctagcgacgatggagccagtagccatcgtcgcctgttcacaaaactccttggatgtg |
48644255 |
T |
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| Q |
623 |
aaatctgaattaggatcaatggttc |
647 |
Q |
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| T |
48644254 |
aaatctgaattaggatcaatggttc |
48644230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 373 - 414
Target Start/End: Original strand, 7594406 - 7594447
Alignment:
| Q |
373 |
ttcacgaacttcatcaacttgacctgcttcaatcatccgatc |
414 |
Q |
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| T |
7594406 |
ttcacgaacttcatcaacttgaccagcttcaatcatacgatc |
7594447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 451 - 487
Target Start/End: Original strand, 7594484 - 7594520
Alignment:
| Q |
451 |
tgaaacatcaacccaaagaaaacaacattcatacctt |
487 |
Q |
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| T |
7594484 |
tgaaacatcaacccatagaaaacaacactcatacctt |
7594520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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