View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18790_high_22 (Length: 240)

Name: NF18790_high_22
Description: NF18790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18790_high_22
NF18790_high_22
[»] scaffold0182 (1 HSPs)
scaffold0182 (18-231)||(25484-25697)
[»] chr7 (19 HSPs)
chr7 (22-179)||(21764225-21764382)
chr7 (19-125)||(21652286-21652392)
chr7 (18-127)||(21623408-21623517)
chr7 (18-127)||(21788444-21788553)
chr7 (18-157)||(21785591-21785730)
chr7 (22-157)||(21807993-21808128)
chr7 (18-127)||(21992397-21992506)
chr7 (22-169)||(21628298-21628445)
chr7 (18-157)||(21726081-21726220)
chr7 (18-157)||(21772146-21772285)
chr7 (18-127)||(21745747-21745856)
chr7 (18-127)||(21792226-21792335)
chr7 (22-157)||(15713808-15713943)
chr7 (18-161)||(21681831-21681974)
chr7 (18-84)||(21714441-21714507)
chr7 (22-127)||(21664313-21664421)
chr7 (18-169)||(21704816-21704967)
chr7 (27-127)||(21646958-21647058)
chr7 (22-127)||(21689628-21689733)
[»] chr1 (1 HSPs)
chr1 (18-78)||(18192063-18192123)


Alignment Details
Target: scaffold0182 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 25697 - 25484
Alignment:
Q  18 agaacatccatccacgaacaacatcaacgacagcttttcttcaagggtaccaaagccttcaagagactttgtagttaaagttaaaacatcctcgctaaaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25697 agaacatccatccacgaacaacatcaacgacagcttttcttcaagggtaccaaagccttcaagagactttttagttaaagttaaaacatcctcgctaaaa 25598  T
Q  118 tgacccttcaaattattgatgtcttcagcaatctttttgtatagtttctctgctttaagtgcaaagttttctgcattaagtgcagtgttttctggttcaa 217  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||    
T  25597 tgacccttcaaattattgatgtcttcatcaatctttttgtatagtttctctgctttaagtgcaaagttttctgcattaagtgcagtgttttctgcatgaa 25498  T
Q  218 gtggagtgttttct 231  Q
    ||| ||||||||||    
T  25497 gtgcagtgttttct 25484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 179
Target Start/End: Complemental strand, 21764382 - 21764225
Alignment:
Q  22 catccatccacgaacaacatcaacgacagcttttcttcaagggtaccaaagccttcaagagactttgtagttaaagttaaaacatcctcgctaaaatgac 121  Q
    ||||||||||||||||||||| |||||| ||||||||||||| ||  |||||||||||||||||||  |||||||||||||||||| ||||||||| |||    
T  21764382 catccatccacgaacaacatccacgacaacttttcttcaaggctatgaaagccttcaagagactttccagttaaagttaaaacatcatcgctaaaacgac 21764283  T
Q  122 ccttcaaattattgatgtcttcagcaatctttttgtatagtttctctgctttaagtgc 179  Q
    ||||||  | || |||||  ||||||||||||| || ||||| |||||  ||||||||    
T  21764282 ccttcagttcatcgatgttatcagcaatcttttggtgtagttcctctggattaagtgc 21764225  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 21652392 - 21652286
Alignment:
Q  19 gaacatccatccacgaacaacatcaacgacagcttttcttcaagggtaccaaagccttcaagagactttgtagttaaagttaaaacatcctcgctaaaat 118  Q
    |||||||||||||||||||||||| |||||| ||||||||||||| || |||||||||||||||||||   |||||||||||||||||| ||||||||||    
T  21652392 gaacatccatccacgaacaacatccacgacaacttttcttcaaggctatcaaagccttcaagagacttgccagttaaagttaaaacatcgtcgctaaaat 21652293  T
Q  119 gaccctt 125  Q
    |||||||    
T  21652292 gaccctt 21652286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 21623517 - 21623408
Alignment:
Q  18 agaacatccatccacgaacaacatcaacgacagcttttcttcaagggtaccaaagccttcaagagactttgtagttaaagttaaaacatcctcgctaaaa 117  Q
    ||||||||||||||||||||||||| ||||||||||||||| || | |||||||||||||||||||||||   ||||||||||||||||| || ||||||    
T  21623517 agaacatccatccacgaacaacatccacgacagcttttctttaatgctaccaaagccttcaagagactttccggttaaagttaaaacatcgtcactaaaa 21623418  T
Q  118 tgacccttca 127  Q
    ||||||||||    
T  21623417 tgacccttca 21623408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 21788553 - 21788444
Alignment:
Q  18 agaacatccatccacgaacaacatcaacgacagcttttcttcaagggtaccaaagccttcaagagactttgtagttaaagttaaaacatcctcgctaaaa 117  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||| | ||||||||||||||||||||   |||||||||||||||||| |||| ||||    
T  21788553 agaacatccatccacgaacaacatccacgacagcttttcttcgaggcttccaaagccttcaagagacttgccagttaaagttaaaacatcgtcgccaaaa 21788454  T
Q  118 tgacccttca 127  Q
    ||||||||||    
T  21788453 tgacccttca 21788444  T

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Target: chr7; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 21785730 - 21785591
Alignment:
Q  18 agaacatccatccacgaacaacatcaacgacagcttttcttcaagggtaccaaagccttcaagagactttgtagttaaagttaaaacatcctcgctaaaa 117  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||| |||||||| ||||||||||||     ||||||||||||||||| |||||||||    
T  21785730 agaacatccatccacaaacaacatccacgacagcttttcttcaaggctaccaaagtcttcaagagactggccggttaaagttaaaacatcatcgctaaaa 21785631  T
Q  118 tgacccttcaaattattgatgtcttcagcaatctttttgt 157  Q
    ||||||||||  | ||| ||||  || |||||||||||||    
T  21785630 tgacccttcagttcattaatgttatcggcaatctttttgt 21785591  T

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Target: chr7; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 22 - 157
Target Start/End: Original strand, 21807993 - 21808128
Alignment:
Q  22 catccatccacgaacaacatcaacgacagcttttcttcaagggtaccaaagccttcaagagactttgtagttaaagttaaaacatcctcgctaaaatgac 121  Q
    ||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||     ||||||||||||||||| |||| ||||||||    
T  21807993 catccatccacgaacaacatccatgacagcttttcttcaaggctaccaaagccttcaagagactggccggttaaagttaaaacatcgtcgccaaaatgac 21808092  T
Q  122 ccttcaaattattgatgtcttcagcaatctttttgt 157  Q
    ||||||  | || |||||  ||||||||||||||||    
T  21808093 ccttcagttcatcgatgttatcagcaatctttttgt 21808128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 21992506 - 21992397
Alignment:
Q  18 agaacatccatccacgaacaacatcaacgacagcttttcttcaagggtaccaaagccttcaagagactttgtagttaaagttaaaacatcctcgctaaaa 117  Q
    ||||||||||||||||||||||||| | |||||||||||||| ||| | |||||||||||||||||||||  || ||||||||||||||| || ||||||    
T  21992506 agaacatccatccacgaacaacatccatgacagcttttcttcgaggcttccaaagccttcaagagactttccagctaaagttaaaacatcgtcactaaaa 21992407  T
Q  118 tgacccttca 127  Q
    ||||||||||    
T  21992406 tgacccttca 21992397  T

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Target: chr7; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 169
Target Start/End: Complemental strand, 21628445 - 21628298
Alignment:
Q  22 catccatccacgaacaacatcaacgacagcttttcttcaagggtaccaaagccttcaagagactttgtagttaaagttaaaacatcctcgctaaaatgac 121  Q
    ||||||||||||||||||||| ||||||||||||||||||||   |||||||||| |||||| |||   |||||| |||||||||| ||||||||| |||    
T  21628445 catccatccacgaacaacatccacgacagcttttcttcaaggcatccaaagccttgaagagagtttcccgttaaatttaaaacatcgtcgctaaaacgac 21628346  T
Q  122 ccttcaaattattgatgtcttcagcaatctttttgtatagtttctctg 169  Q
    ||||||  | ||  ||||  |||||||||||||||| ||||| |||||    
T  21628345 ccttcagttcatcaatgttatcagcaatctttttgtgtagttcctctg 21628298  T

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Target: chr7; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 21726220 - 21726081
Alignment:
Q  18 agaacatccatccacgaacaacatcaacgacagcttttcttcaagggtaccaaagccttcaagagactttgtagttaaagttaaaacatcctcgctaaaa 117  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||| ||||||||  | | ||| ||| ||||||||| |||  ||||    
T  21726220 agaacatccatccacgaacaacatccacgacagcttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaacatcgtcgtcaaaa 21726121  T
Q  118 tgacccttcaaattattgatgtcttcagcaatctttttgt 157  Q
    ||||||||||  | ||  ||||  ||||||||||||||||    
T  21726120 tgacccttcagttcatcaatgttatcagcaatctttttgt 21726081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 21772285 - 21772146
Alignment:
Q  18 agaacatccatccacgaacaacatcaacgacagcttttcttcaagggtaccaaagccttcaagagactttgtagttaaagttaaaacatcctcgctaaaa 117  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||| ||| ||||||| ||||||||  | | ||| ||||||||||||| |||  ||||    
T  21772285 agaacatccatccacgaacaacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagttaaaacatcatcgtcaaaa 21772186  T
Q  118 tgacccttcaaattattgatgtcttcagcaatctttttgt 157  Q
    ||||||||||  | ||  ||||  ||||||||||||||||    
T  21772185 tgacccttcagttcatcaatgttatcagcaatctttttgt 21772146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 21745856 - 21745747
Alignment:
Q  18 agaacatccatccacgaacaacatcaacgacagcttttcttcaagggtaccaaagccttcaagagactttgtagttaaagttaaaacatcctcgctaaaa 117  Q
    |||||||||||| ||||| |||||| ||||||||||||||||||||    ||||||||| |||||| |||  |||||||||||||||||| |||||||||    
T  21745856 agaacatccatctacgaataacatccacgacagcttttcttcaaggcattcaaagccttgaagagaatttccagttaaagttaaaacatcgtcgctaaaa 21745757  T
Q  118 tgacccttca 127  Q
     |||||||||    
T  21745756 cgacccttca 21745747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 21792335 - 21792226
Alignment:
Q  18 agaacatccatccacgaacaacatcaacgacagcttttcttcaagggtaccaaagccttcaagagactttgtagttaaagttaaaacatcctcgctaaaa 117  Q
    ||||||||||||||||||||| ||| | |||||||||||||| ||| |||||||||| |||||||||||    ||||||||||||||||| |||||||||    
T  21792335 agaacatccatccacgaacaatatccatgacagcttttcttcgaggctaccaaagccgtcaagagacttgcgggttaaagttaaaacatcatcgctaaaa 21792236  T
Q  118 tgacccttca 127  Q
     || ||||||    
T  21792235 cgatccttca 21792226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 15713943 - 15713808
Alignment:
Q  22 catccatccacgaacaacatcaacgacagcttttcttcaagggtaccaaagccttcaagagactttgtagttaaagttaaaacatcctcgctaaaatgac 121  Q
    ||||||||||||||||||||| | |||||||||||||| ||| ||||||| |||| ||| ||||||   ||||||||||||||||| || ||||||||||    
T  15713943 catccatccacgaacaacatccatgacagcttttcttctaggctaccaaatccttgaagtgactttccggttaaagttaaaacatcgtcactaaaatgac 15713844  T
Q  122 ccttcaaattattgatgtcttcagcaatctttttgt 157  Q
     |||||  | ||  ||||  ||||||||||||||||    
T  15713843 acttcagttcatcaatgttatcagcaatctttttgt 15713808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 21681974 - 21681831
Alignment:
Q  18 agaacatccatccacgaacaacatcaacgacagcttttcttcaagggtaccaaagccttcaagagactttgtagttaaagttaaaacatcctcgctaaaa 117  Q
    ||||||||||||||||||||||||| | || | ||||||||||||| ||  | |||||||||||||||     ||||||||||||||||| |||||||||    
T  21681974 agaacatccatccacgaacaacatccatgataacttttcttcaaggctatgatagccttcaagagactcgccggttaaagttaaaacatcgtcgctaaaa 21681875  T
Q  118 tgacccttcaaattattgatgtcttcagcaatctttttgtatag 161  Q
    || |||||||| | ||  ||||  |||||||| |||||||||||    
T  21681874 tggcccttcaattcatcaatgttatcagcaatttttttgtatag 21681831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 21714507 - 21714441
Alignment:
Q  18 agaacatccatccacgaacaacatcaacgacagcttttcttcaagggtaccaaagccttcaagagac 84  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||    
T  21714507 agaacatccatccacgaacaacatccacgatagcttttcttcaaggctaccaaagccttcaagagac 21714441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 21664421 - 21664313
Alignment:
Q  22 catccatccacgaacaacatcaacgacagcttttcttcaagggtaccaaagccttcaagagactttgtagttaaagttaaa---acatcctcgctaaaat 118  Q
    ||||||||||||||||| ||| |||||||||||||||||||| | ||||||||||||||||||||    ||||||||||||   ||||| |||  |||||    
T  21664421 catccatccacgaacaatatccacgacagcttttcttcaaggcttccaaagccttcaagagacttgccggttaaagttaaaattacatcatcgtcaaaat 21664322  T
Q  119 gacccttca 127  Q
    |||||||||    
T  21664321 gacccttca 21664313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 21704967 - 21704816
Alignment:
Q  18 agaacatccatccacgaacaacatcaacgacagcttttcttcaagggtaccaaagccttcaagagactttgtagttaaagttaaaacatcctcgctaaaa 117  Q
    |||||||||||||| |||||| ||| ||||||||||||| ||||||    ||||||||| |||||| |||   |||| |||||||||||| |||||||||    
T  21704967 agaacatccatccatgaacaatatccacgacagcttttcatcaaggcactcaaagccttgaagagagtttccggttagagttaaaacatcatcgctaaaa 21704868  T
Q  118 tgacccttcaaattattgatgtcttcagcaatctttttgtatagtttctctg 169  Q
     |||||||||  | ||  ||||  || ||||||||||||| ||||| |||||    
T  21704867 cgacccttcagttcatcaatgttatctgcaatctttttgtgtagttcctctg 21704816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 21647058 - 21646958
Alignment:
Q  27 atccacgaacaacatcaacgacagcttttcttcaagggtaccaaagccttcaagagactttgtagttaaagttaaaacatcctcgctaaaatgacccttc 126  Q
    |||||||||||| ||| |||||| ||||||||||||| |||  ||||||| |||||||||    || ||||||||||| || ||||||||||||||||||    
T  21647058 atccacgaacaatatccacgacaacttttcttcaaggctacggaagcctttaagagacttgccggtcaaagttaaaacgtcgtcgctaaaatgacccttc 21646959  T
Q  127 a 127  Q
    |    
T  21646958 a 21646958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 21689733 - 21689628
Alignment:
Q  22 catccatccacgaacaacatcaacgacagcttttcttcaagggtaccaaagccttcaagagactttgtagttaaagttaaaacatcctcgctaaaatgac 121  Q
    ||||||||||| ||||||||| |||| ||||||||||||||  || |||||||||| ||||| |||   || || ||||||||||| ||   ||||||||    
T  21689733 catccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttccggtcaatgttaaaacatcgtcatcaaaatgac 21689634  T
Q  122 ccttca 127  Q
    ||||||    
T  21689633 ccttca 21689628  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 18192063 - 18192123
Alignment:
Q  18 agaacatccatccacgaacaacatcaacgacagcttttcttcaagggtaccaaagccttca 78  Q
    ||||||||||||||| ||||||||| | || ||||||||||| | | || |||||||||||    
T  18192063 agaacatccatccacaaacaacatccatgatagcttttcttccaagttatcaaagccttca 18192123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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