View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18790_high_7 (Length: 448)
Name: NF18790_high_7
Description: NF18790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18790_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 50 - 431
Target Start/End: Original strand, 34590783 - 34591164
Alignment:
| Q |
50 |
aaatgatgaaaggcaacctgaaattgatgagcaaaaaatgttgtagtatctgattctgaaaatagcaatgatgaaaattaggatttggggaaaaggctaa |
149 |
Q |
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| T |
34590783 |
aaataatgaaaggcaacctgaaattgatgagcaaaaaatgttatagcatctgattctgaaaatagcaatgatgaaaattaggatttggggaaaaggctaa |
34590882 |
T |
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| Q |
150 |
gcagaagccctgcatatctggatgattatgacactacaaaagctactaaagcacaatctctccataatcttgttgtattcagctccagtgaagatccaac |
249 |
Q |
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| T |
34590883 |
gcagaagccctgcatatctggatgattatgacactacaaaagctactaaagcacaatctctccataatcttgttgtattcagctccagtgaagatccaac |
34590982 |
T |
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| Q |
250 |
atcgtatgaataatttgctaagcatggtcatctaagaaacaacctataataactctttccactactaaggcagagtacatggcaactgctagcagtgtat |
349 |
Q |
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| T |
34590983 |
atcatatgaataatttgctaagcatggtcatctaagaaacaacctataataactctttccactactgaggcagagtacatggcaactgctagcagtgtat |
34591082 |
T |
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| Q |
350 |
gtcatgtagtatggttttaaggatcttagtttaaattcgaagtaattaaggggactgcatcaccattcactgtgacaatagt |
431 |
Q |
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| T |
34591083 |
gtcatgtagtatggttttaaggatcttagtttaaattggaagtaattaaggggactgcatcaccattcactgtgacaatagt |
34591164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 34590717 - 34590767
Alignment:
| Q |
5 |
gagcagcacagacaaggtaacctacaacgcaagcaatcatagtgaaaatga |
55 |
Q |
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| T |
34590717 |
gagcaacacaaacaaggtaacctacaacgcaagcaatcatagtgaaaatga |
34590767 |
T |
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