View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18790_low_1 (Length: 811)

Name: NF18790_low_1
Description: NF18790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18790_low_1
NF18790_low_1
[»] chr2 (3 HSPs)
chr2 (192-805)||(21259995-21260608)
chr2 (190-380)||(21264574-21264764)
chr2 (562-778)||(32225035-32225248)
[»] chr1 (3 HSPs)
chr1 (192-805)||(47800566-47801180)
chr1 (190-376)||(47805146-47805332)
chr1 (641-700)||(34171985-34172044)
[»] chr3 (3 HSPs)
chr3 (191-805)||(6843115-6843729)
chr3 (193-376)||(6847720-6847903)
chr3 (641-700)||(5865001-5865060)
[»] scaffold0043 (1 HSPs)
scaffold0043 (580-747)||(55859-56026)
[»] chr7 (1 HSPs)
chr7 (651-778)||(38461969-38462096)
[»] chr6 (1 HSPs)
chr6 (614-701)||(526733-526820)
[»] chr5 (1 HSPs)
chr5 (641-700)||(15669568-15669627)


Alignment Details
Target: chr2 (Bit Score: 566; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 192 - 805
Target Start/End: Original strand, 21259995 - 21260608
Alignment:
Q  192 tgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaatagg 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21259995 tgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaatagg 21260094  T
Q  292 tttttcacttgtatatatagaatacctttacactcttgtaataaagatttggaaagaaataaaatgcgacctactctatcagtttgacatggtatcagag 391  Q
    ||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  21260095 ttttttacttgtatatatagaatacctttacactcttgtaatgtagatttggaaagaaataaaatgagacctactgtatcagtttgacatggtatcagag 21260194  T
Q  392 ctttcgatccaaaacctaatataactctgaaaccctaaaaattcacctccttccatggccgactctgattctaatacggaagacacatcatcgtcctcca 491  Q
    |||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21260195 cttctgatccaaaacctaatataactctgaaaccctaaaaatccacctccttccatggccgactctgattctaatacggaagacacatcatcgtcctcca 21260294  T
Q  492 tcctagctgaattgacggcgaaaatgacagaagttttgaaccgagctgcagccccgtcacaagttaatgttaattctgatcatacggtggtggcaccaat 591  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21260295 tcctagctgaattgacggcgaaaatgacggaagttttgaaccgagctgcagccccgtcacaagttaatgttaattctgatcatacggtggtggcaccaat 21260394  T
Q  592 cggcatcaaattagacggcagcaactacccactttggtcccaggttgtcgagatgtatatctcaggcaaagacaagctgggttatatcaatggagatctt 691  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21260395 cggcatcaaattagacggcagcaactacccactttggtcccaggttgtcgagatgtatatctcaggcaaagacaagctgggttatatcaatggagatctt 21260494  T
Q  692 cctcaacctcctcaaactgaccctacttttcgacgttggcgggctgacaacgcgattgtaaaaggatggctgattaactctatggacacctccctcatca 791  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21260495 cctcaacctcctcaaactgaccctacttttcgacgttggcggactgacaacgcgattgtaaaaggatggctgattaactctatggacacctccctcatca 21260594  T
Q  792 gtaatattcttcga 805  Q
    ||||| || |||||    
T  21260595 gtaattttattcga 21260608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 190 - 380
Target Start/End: Original strand, 21264574 - 21264764
Alignment:
Q  190 agtgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaata 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21264574 agtgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaata 21264673  T
Q  290 ggtttttcacttgtatatatagaatacctttacactcttgtaataaagatttggaaagaaataaaatgcgacctactctatcagtttgaca 380  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||| |||||||||||||    
T  21264674 ggttttttacttgtatatatagaatacctttacactcttgtaatgtagatttggaaagaaataaaatgagacctactgtatcagtttgaca 21264764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 562 - 778
Target Start/End: Complemental strand, 32225248 - 32225035
Alignment:
Q  562 taattctgatcatacggtggtggcaccaatcggcatcaaattagacggcagcaactacccactttggtcccaggttgtcgagatgtatatctcaggcaaa 661  Q
    |||||||||||||||||||| |   ||||| ||||||||||| || |||| |||||| || |||| |||  |||| ||||||||||||||||| ||||||    
T  32225248 taattctgatcatacggtggcg---ccaattggcatcaaattggatggcaacaactatcccctttagtcttaggtggtcgagatgtatatctctggcaaa 32225152  T
Q  662 gacaagctgggttatatcaatggagatcttcctcaacctcctcaaactgaccctacttttcgacgttggcgggctgacaacgcgattgtaaaaggatggc 761  Q
    ||||| || || || ||||||||||||||||| |||||||||||||| |||||||| |||| |||| ||||  |||| |||||||| || || ||||||     
T  32225151 gacaaactaggatacatcaatggagatcttccgcaacctcctcaaacagaccctacctttcaacgtcggcgaactgagaacgcgatcgttaagggatgga 32225052  T
Q  762 tgattaactctatggac 778  Q
    | || ||||| ||||||    
T  32225051 taatcaactccatggac 32225035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 543; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 192 - 805
Target Start/End: Original strand, 47800566 - 47801180
Alignment:
Q  192 tgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaatagg 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  47800566 tgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcaaaaataatttaccattatttcaatctagtaaaaatagg 47800665  T
Q  292 tttttcacttgtatatatagaatacctttacactcttgtaataaagatttggaaagaaataaaatgcgacctactctatcagtttgacatggtatca-ga 390  Q
    ||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||| ||||||||| ||||||||||| ||    
T  47800666 ttttttacttgtatatatagaatacctttacactcttgtaatgtagatttggaaagaaataaaatgagacctactgtatcagtttaacatggtatcaaga 47800765  T
Q  391 gctttcgatccaaaacctaatataactctgaaaccctaaaaattcacctccttccatggccgactctgattctaatacggaagacacatcatcgtcctcc 490  Q
    ||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47800766 gcttctgatccaaaacctaatataactctgaaaccctaaaaatccacctccttccatggccgactctgattctaatacggaagacacatcatcgtcctcc 47800865  T
Q  491 atcctagctgaattgacggcgaaaatgacagaagttttgaaccgagctgcagccccgtcacaagttaatgttaattctgatcatacggtggtggcaccaa 590  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  47800866 atcctagctgaattgacggcgaaaatgacggaagttttgaaccgagctgcagccccgtcacaagttaatgttagttctgatcatacggtggtggcaccaa 47800965  T
Q  591 tcggcatcaaattagacggcagcaactacccactttggtcccaggttgtcgagatgtatatctcaggcaaagacaagctgggttatatcaatggagatct 690  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47800966 tcggcatcaaattagacggcagcaactacccactttggtcccaggttgtcgagatgtatatctcaggcaaagacaagctgggttatatcaatggagatct 47801065  T
Q  691 tcctcaacctcctcaaactgaccctacttttcgacgttggcgggctgacaacgcgattgtaaaaggatggctgattaactctatggacacctccctcatc 790  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47801066 tcctcaacctcctcaaactgaccctacttttcgacgttggcggactgacaacgcgattgtaaaaggatggctgattaactctatggacacctccctcatc 47801165  T
Q  791 agtaatattcttcga 805  Q
    |||||| || |||||    
T  47801166 agtaattttattcga 47801180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 190 - 376
Target Start/End: Original strand, 47805146 - 47805332
Alignment:
Q  190 agtgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaata 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47805146 agtgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaata 47805245  T
Q  290 ggtttttcacttgtatatatagaatacctttacactcttgtaataaagatttggaaagaaataaaatgcgacctactctatcagttt 376  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||| |||||||||    
T  47805246 ggttttttacttgtatatatagaatacctttacactcttgtaatgtagatttggaaagaaataaaatgagacctactgtatcagttt 47805332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 641 - 700
Target Start/End: Complemental strand, 34172044 - 34171985
Alignment:
Q  641 gagatgtatatctcaggcaaagacaagctgggttatatcaatggagatcttcctcaacct 700  Q
    ||||||||||||||||| ||||||||| |||| || |||||||||||| |||| ||||||    
T  34172044 gagatgtatatctcaggaaaagacaagttggggtacatcaatggagatattccccaacct 34171985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 535; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 191 - 805
Target Start/End: Original strand, 6843115 - 6843729
Alignment:
Q  191 gtgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaatag 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6843115 gtgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaatag 6843214  T
Q  291 gtttttcacttgtatatatagaatacctttacactcttgtaataaagatttggaaagaaataaaatgcgacctactctatcagtttgacatggtatcaga 390  Q
     ||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||| ||||||||| |||||||||||||    
T  6843215 attttttacttgtatatatagaatacctttacactcttgtaatgtagatttggaaagaaataaaatgagacctactgtatcagtttaacatggtatcaga 6843314  T
Q  391 gctttcgatccaaaacctaatataactctgaaaccctaaaaattcacctccttccatggccgactctgattctaatacggaagacacatcatcgtcctcc 490  Q
    ||||  ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6843315 gcttctgatccaaaacctaatataattctgaaaccctaaaaatccacctccttccatggccgactctgattctaatatggaagacacatcatcgtcctcc 6843414  T
Q  491 atcctagctgaattgacggcgaaaatgacagaagttttgaaccgagctgcagccccgtcacaagttaatgttaattctgatcatacggtggtggcaccaa 590  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6843415 atcctagctgaattgacggcgaaaatgacggaagttttgaaccaagctgcagccccgtcacaagttaatgttaattttgatcatacggtggtggcaccaa 6843514  T
Q  591 tcggcatcaaattagacggcagcaactacccactttggtcccaggttgtcgagatgtatatctcaggcaaagacaagctgggttatatcaatggagatct 690  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6843515 tcggcatcaaattagacggcagcaactacccactttggtcccaggttgtcgagatgtatatctcaggcacagacaagctgggttatatcaatggagatct 6843614  T
Q  691 tcctcaacctcctcaaactgaccctacttttcgacgttggcgggctgacaacgcgattgtaaaaggatggctgattaactctatggacacctccctcatc 790  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6843615 tcctcaacctcctcaaactgaccctacttttcgacgttggcggactgacaacacgattgtaaaaggatggctgattaactctatggacacctccctcatc 6843714  T
Q  791 agtaatattcttcga 805  Q
    |||||| || |||||    
T  6843715 agtaattttattcga 6843729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 193 - 376
Target Start/End: Original strand, 6847720 - 6847903
Alignment:
Q  193 gttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggt 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6847720 gttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggt 6847819  T
Q  293 ttttcacttgtatatatagaatacctttacactcttgtaataaagatttggaaagaaataaaatgcgacctactctatcagttt 376  Q
    |||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||| |||||||||    
T  6847820 tttttacttgtatatatagaatacctttacactcttgtaatgtagatttggaaagaaataaaatgagacctactgtatcagttt 6847903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 641 - 700
Target Start/End: Complemental strand, 5865060 - 5865001
Alignment:
Q  641 gagatgtatatctcaggcaaagacaagctgggttatatcaatggagatcttcctcaacct 700  Q
    ||||||||||||||||| ||||||||| |||| || |||||||||||| |||| ||||||    
T  5865060 gagatgtatatctcaggaaaagacaagttggggtacatcaatggagatattccccaacct 5865001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 100; Significance: 5e-49; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 580 - 747
Target Start/End: Original strand, 55859 - 56026
Alignment:
Q  580 ggtggcaccaatcggcatcaaattagacggcagcaactacccactttggtcccaggttgtcgagatgtatatctcaggcaaagacaagctgggttatatc 679  Q
    |||||| || || ||||||||||| || ||||||||||| || |||||||||||||| || |||||||||||||||||||||||||| ||||| || |||    
T  55859 ggtggcgccgattggcatcaaattggatggcagcaactatcccctttggtcccaggtggttgagatgtatatctcaggcaaagacaaactgggatacatc 55958  T
Q  680 aatggagatcttcctcaacctcctcaaactgaccctacttttcgacgttggcgggctgacaacgcgat 747  Q
    |||||||||||||| |||||||||||||| |||||||| ||||||| ||||||| |||||||||||||    
T  55959 aatggagatcttccgcaacctcctcaaacagaccctacctttcgacattggcggactgacaacgcgat 56026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 651 - 778
Target Start/End: Complemental strand, 38462096 - 38461969
Alignment:
Q  651 tctcaggcaaagacaagctgggttatatcaatggagatcttcctcaacctcctcaaactgaccctacttttcgacgttggcgggctgacaacgcgattgt 750  Q
    |||||||||||||||| ||||| || ||||||||||||||||| | |||||||||||| |||||||| |||||||||||| || ||||||||||||| ||    
T  38462096 tctcaggcaaagacaaactgggatacatcaatggagatcttccgccacctcctcaaacagaccctacctttcgacgttgggggactgacaacgcgatcgt 38461997  T
Q  751 aaaaggatggctgattaactctatggac 778  Q
     || |||||| | || ||||| ||||||    
T  38461996 taagggatggataatcaactccatggac 38461969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 614 - 701
Target Start/End: Complemental strand, 526820 - 526733
Alignment:
Q  614 aactacccactttggtcccaggttgtcgagatgtatatctcaggcaaagacaagctgggttatatcaatggagatcttcctcaacctc 701  Q
    ||||| ||||| ||||||||  |||| |||||||||||||| || || |||||  |||| ||||||||||||||||| || |||||||    
T  526820 aactatccactatggtcccaaattgttgagatgtatatctctggaaaggacaaattggggtatatcaatggagatctgccacaacctc 526733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 641 - 700
Target Start/End: Complemental strand, 15669627 - 15669568
Alignment:
Q  641 gagatgtatatctcaggcaaagacaagctgggttatatcaatggagatcttcctcaacct 700  Q
    ||||||||||||||||| ||||||||| |||| || |||||||||||| |||| ||||||    
T  15669627 gagatgtatatctcaggaaaagacaagttggggtacatcaatggagatattccccaacct 15669568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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