View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18790_low_12 (Length: 374)

Name: NF18790_low_12
Description: NF18790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18790_low_12
NF18790_low_12
[»] chr4 (29 HSPs)
chr4 (7-259)||(21304528-21304778)
chr4 (7-258)||(8984981-8985230)
chr4 (7-258)||(13700780-13701029)
chr4 (7-258)||(21299409-21299658)
chr4 (7-258)||(54991746-54991995)
chr4 (7-259)||(8979860-8980110)
chr4 (20-258)||(39999405-39999640)
chr4 (20-258)||(54343539-54343774)
chr4 (20-258)||(54348693-54348928)
chr4 (7-224)||(54990418-54990635)
chr4 (20-224)||(40004363-40004567)
chr4 (20-224)||(36359664-36359868)
chr4 (20-258)||(36354478-36354712)
chr4 (103-224)||(53798329-53798450)
chr4 (103-224)||(41393858-41393979)
chr4 (103-224)||(51018732-51018853)
chr4 (103-260)||(9763265-9763420)
chr4 (103-258)||(13695757-13695910)
chr4 (103-258)||(13711370-13711523)
chr4 (103-258)||(4207042-4207194)
chr4 (103-223)||(47045647-47045767)
chr4 (20-92)||(13695431-13695503)
chr4 (20-92)||(9763771-9763843)
chr4 (20-92)||(41393512-41393584)
chr4 (20-92)||(53797898-53797970)
chr4 (257-351)||(21237295-21237389)
chr4 (20-102)||(51019117-51019199)
chr4 (20-92)||(13710938-13711010)
chr4 (20-92)||(47046060-47046132)
[»] scaffold0517 (1 HSPs)
scaffold0517 (7-258)||(3833-4083)
[»] chr6 (20 HSPs)
chr6 (7-258)||(22702942-22703191)
chr6 (20-224)||(22697798-22698002)
chr6 (7-258)||(21402011-21402260)
chr6 (80-224)||(29490838-29490982)
chr6 (103-258)||(2817395-2817548)
chr6 (103-260)||(34142781-34142936)
chr6 (103-260)||(34155397-34155552)
chr6 (103-224)||(6727803-6727924)
chr6 (103-224)||(34376464-34376585)
chr6 (103-258)||(24190648-24190802)
chr6 (103-224)||(31983475-31983596)
chr6 (20-92)||(31981832-31981904)
chr6 (20-92)||(34376198-34376270)
chr6 (20-92)||(2817901-2817973)
chr6 (20-92)||(24191126-24191198)
chr6 (20-92)||(24192223-24192295)
chr6 (20-80)||(34142358-34142418)
chr6 (20-80)||(34154974-34155034)
chr6 (7-60)||(29491008-29491061)
chr6 (30-92)||(6728193-6728255)
[»] chr1 (27 HSPs)
chr1 (7-258)||(27711593-27711842)
chr1 (7-258)||(37403993-37404243)
chr1 (7-258)||(37409112-37409362)
chr1 (20-224)||(36684270-36684474)
chr1 (7-255)||(11250701-11250948)
chr1 (21-224)||(34317840-34318043)
chr1 (7-257)||(27716713-27716963)
chr1 (103-258)||(5725365-5725518)
chr1 (103-264)||(3585301-3585460)
chr1 (256-359)||(2006213-2006316)
chr1 (103-223)||(5730771-5730891)
chr1 (103-224)||(48245998-48246119)
chr1 (256-359)||(2019530-2019633)
chr1 (165-256)||(50958978-50959069)
chr1 (256-359)||(2011721-2011824)
chr1 (256-359)||(2010311-2010414)
chr1 (256-341)||(3218709-3218794)
chr1 (20-92)||(5730374-5730446)
chr1 (256-359)||(3372449-3372552)
chr1 (256-359)||(6601924-6602027)
chr1 (276-361)||(3345338-3345423)
chr1 (20-92)||(3584870-3584942)
chr1 (256-351)||(3361477-3361572)
chr1 (20-102)||(48246427-48246509)
chr1 (256-336)||(4335204-4335284)
chr1 (289-339)||(3340300-3340350)
chr1 (256-336)||(4323305-4323385)
[»] chr5 (19 HSPs)
chr5 (7-224)||(17510328-17510545)
chr5 (7-258)||(17505223-17505474)
chr5 (7-258)||(42019843-42020092)
chr5 (7-258)||(43579930-43580181)
chr5 (7-224)||(42024623-42024840)
chr5 (12-257)||(41858861-41859103)
chr5 (114-258)||(41853846-41853990)
chr5 (103-223)||(1413100-1413220)
chr5 (103-224)||(36254517-36254638)
chr5 (103-224)||(24770631-24770752)
chr5 (127-219)||(26709712-26709804)
chr5 (127-219)||(26979446-26979538)
chr5 (103-193)||(24776116-24776206)
chr5 (20-92)||(24776563-24776635)
chr5 (20-92)||(1413806-1413878)
chr5 (20-92)||(24771108-24771180)
chr5 (20-92)||(26709372-26709444)
chr5 (20-92)||(26979106-26979178)
chr5 (20-92)||(36254105-36254177)
[»] chr3 (23 HSPs)
chr3 (7-252)||(55129060-55129304)
chr3 (20-258)||(15767715-15767950)
chr3 (7-217)||(17368989-17369199)
chr3 (20-224)||(15762585-15762789)
chr3 (20-258)||(20095310-20095546)
chr3 (20-257)||(20090186-20090421)
chr3 (103-258)||(3481643-3481796)
chr3 (103-256)||(34128405-34128558)
chr3 (103-224)||(17358566-17358686)
chr3 (103-224)||(30338126-30338247)
chr3 (103-224)||(30341230-30341351)
chr3 (103-224)||(54271312-54271433)
chr3 (103-193)||(3476249-3476339)
chr3 (103-193)||(4117007-4117097)
chr3 (20-92)||(17358107-17358179)
chr3 (20-92)||(54270914-54270986)
chr3 (20-92)||(3482166-3482238)
chr3 (20-92)||(4117345-4117417)
chr3 (20-92)||(30338506-30338578)
chr3 (20-92)||(34128923-34128995)
chr3 (20-92)||(3476699-3476771)
chr3 (20-92)||(10321712-10321784)
chr3 (22-67)||(10321816-10321861)
[»] chr7 (29 HSPs)
chr7 (20-258)||(33238338-33238574)
chr7 (20-224)||(47994136-47994340)
chr7 (20-257)||(33243515-33243750)
chr7 (20-258)||(47999311-47999546)
chr7 (103-258)||(21080315-21080468)
chr7 (103-224)||(2233978-2234099)
chr7 (103-224)||(19308902-19309023)
chr7 (103-224)||(17496100-17496221)
chr7 (103-224)||(17556993-17557114)
chr7 (103-224)||(32211991-32212112)
chr7 (103-224)||(42572600-42572721)
chr7 (103-224)||(12935084-12935205)
chr7 (103-259)||(47176489-47176643)
chr7 (110-224)||(16538699-16538813)
chr7 (110-224)||(16626849-16626963)
chr7 (103-224)||(43893542-43893663)
chr7 (20-92)||(2234384-2234456)
chr7 (171-258)||(47544743-47544828)
chr7 (20-92)||(12934666-12934738)
chr7 (20-92)||(17495672-17495744)
chr7 (20-92)||(17557470-17557542)
chr7 (20-92)||(19309365-19309437)
chr7 (20-92)||(21080793-21080865)
chr7 (20-92)||(42572214-42572286)
chr7 (20-92)||(43893138-43893210)
chr7 (20-92)||(16539166-16539238)
chr7 (20-92)||(16626424-16626496)
chr7 (20-92)||(47176904-47176976)
chr7 (20-80)||(32212419-32212479)
[»] scaffold0055 (1 HSPs)
scaffold0055 (20-258)||(3360-3595)
[»] scaffold0052 (1 HSPs)
scaffold0052 (20-258)||(80940-81175)
[»] chr8 (18 HSPs)
chr8 (20-258)||(32010862-32011097)
chr8 (20-224)||(32016036-32016240)
chr8 (7-223)||(2165421-2165638)
chr8 (103-257)||(43998541-43998693)
chr8 (103-256)||(17955130-17955281)
chr8 (103-224)||(24885324-24885445)
chr8 (103-260)||(42513840-42513995)
chr8 (103-193)||(21641184-21641273)
chr8 (20-102)||(24884982-24885064)
chr8 (20-92)||(21643835-21643907)
chr8 (20-92)||(21643020-21643092)
chr8 (20-92)||(21643395-21643467)
chr8 (20-92)||(43998984-43999056)
chr8 (21-84)||(42514182-42514245)
chr8 (20-92)||(21641520-21641592)
chr8 (20-92)||(21641895-21641967)
chr8 (20-92)||(21642270-21642342)
chr8 (20-92)||(21642645-21642717)
[»] chr2 (17 HSPs)
chr2 (20-258)||(42728144-42728379)
chr2 (20-224)||(44096638-44096842)
chr2 (20-223)||(42723007-42723210)
chr2 (7-224)||(40392589-40392806)
chr2 (30-224)||(44754161-44754355)
chr2 (7-256)||(40518043-40518297)
chr2 (30-258)||(44759296-44759521)
chr2 (29-258)||(40519925-40520160)
chr2 (103-224)||(4162921-4163042)
chr2 (103-224)||(28751047-28751168)
chr2 (266-359)||(20934229-20934322)
chr2 (256-359)||(39273808-39273911)
chr2 (20-92)||(4163331-4163403)
chr2 (266-359)||(20952773-20952866)
chr2 (20-92)||(28751483-28751555)
chr2 (256-352)||(20923236-20923332)
chr2 (303-339)||(20926881-20926917)
[»] scaffold0014 (2 HSPs)
scaffold0014 (20-224)||(31881-32085)
scaffold0014 (20-224)||(26709-26913)
[»] scaffold0594 (2 HSPs)
scaffold0594 (103-224)||(8560-8681)
scaffold0594 (20-92)||(8962-9034)
[»] scaffold0166 (4 HSPs)
scaffold0166 (103-224)||(13012-13133)
scaffold0166 (103-193)||(18500-18590)
scaffold0166 (20-92)||(18946-19018)
scaffold0166 (20-92)||(13493-13565)
[»] scaffold0060 (2 HSPs)
scaffold0060 (20-102)||(37279-37361)
scaffold0060 (103-161)||(37654-37712)


Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 259
Target Start/End: Complemental strand, 21304778 - 21304528
Alignment:
Q  7 ggagcagagaggagagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctac 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21304778 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 21304679  T
Q  107 tagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 206  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21304678 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 21304579  T
Q  207 tcactagtatactccaagnnnnnnnnccattatacactagtgttccaacaatt 259  Q
    ||||||||||||||||||         ||||||||||||||||||||||||||    
T  21304578 tcactagtatactccaagttttttt--cattatacactagtgttccaacaatt 21304528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 258
Target Start/End: Complemental strand, 8985230 - 8984981
Alignment:
Q  7 ggagcagagaggagagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctac 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8985230 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 8985131  T
Q  107 tagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 206  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8985130 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 8985031  T
Q  207 tcactagtatactccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    ||||||||||||||||||         |||||||||||||||||||||||||    
T  8985030 tcactagtatactccaagttttttt--cattatacactagtgttccaacaat 8984981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 13700780 - 13701029
Alignment:
Q  7 ggagcagagaggagagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctac 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13700780 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 13700879  T
Q  107 tagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 206  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13700880 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 13700979  T
Q  207 tcactagtatactccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    ||||||||||||||||||         |||||||||||||||||||||||||    
T  13700980 tcactagtatactccaagttttttt--cattatacactagtgttccaacaat 13701029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 258
Target Start/End: Complemental strand, 21299658 - 21299409
Alignment:
Q  7 ggagcagagaggagagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctac 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21299658 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctac 21299559  T
Q  107 tagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 206  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21299558 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttcttcatccttgtgtttacattccaaaggctccacaaac 21299459  T
Q  207 tcactagtatactccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    ||||||||||||||||||         |||||||||||||||||||||||||    
T  21299458 tcactagtatactccaagttttttt--cattatacactagtgttccaacaat 21299409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 54991746 - 54991995
Alignment:
Q  7 ggagcagagaggagagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctac 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  54991746 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttgaagtgaagaatactattcccgagctttcaatttataaggaggatttctac 54991845  T
Q  107 tagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 206  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54991846 tagagtgtgtgatctatccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 54991945  T
Q  207 tcactagtatactccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    ||||||||||||||||||         |||||||||||||||||||||||||    
T  54991946 tcactagtatactccaagttttttt--cattatacactagtgttccaacaat 54991995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 259
Target Start/End: Complemental strand, 8980110 - 8979860
Alignment:
Q  7 ggagcagagaggagagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctac 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  8980110 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattctcgagctctcaatttataaggaggatttctac 8980011  T
Q  107 tagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 206  Q
    |||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8980010 tagagtgtgtgatctacccgatatgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 8979911  T
Q  207 tcactagtatactccaagnnnnnnnnccattatacactagtgttccaacaatt 259  Q
    ||||||||||||||||||         ||||||||||||||||||||||||||    
T  8979910 tcactagtatactccaagttttttt--cattatacactagtgttccaacaatt 8979860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 39999405 - 39999640
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39999405 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 39999504  T
Q  120 ctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  39999505 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatact 39999604  T
Q  220 ccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    |||||         |||||||||||||||||||||||||    
T  39999605 ccaagtttttt---cattatacactagtgttccaacaat 39999640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 54343539 - 54343774
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54343539 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 54343638  T
Q  120 ctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  54343639 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatact 54343738  T
Q  220 ccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    |||||         |||||||||||||||||||||||||    
T  54343739 ccaagtttttt---cattatacactagtgttccaacaat 54343774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 54348693 - 54348928
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54348693 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 54348792  T
Q  120 ctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  54348793 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatact 54348892  T
Q  220 ccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    |||||         |||||||||||||||||||||||||    
T  54348893 ccaagtttttt---cattatacactagtgttccaacaat 54348928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 54990635 - 54990418
Alignment:
Q  7 ggagcagagaggagagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctac 106  Q
    |||| |||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||    
T  54990635 ggagtagagaggagagaaaacaagagaagagtatttgattctcagttttggagtgaagaatactatacccgagctctcaatttataaggagaatttctac 54990536  T
Q  107 tagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 206  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  54990535 tagagtgtgtgatctatccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgttaacattccaaaggctccacaaac 54990436  T
Q  207 tcactagtatactccaag 224  Q
    ||||||||||||||||||    
T  54990435 tcactagtatactccaag 54990418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 40004363 - 40004567
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40004363 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 40004462  T
Q  120 ctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  40004463 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatact 40004562  T
Q  220 ccaag 224  Q
    |||||    
T  40004563 ccaag 40004567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 36359664 - 36359868
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  36359664 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcctgagctctcaatttataaggagaatttctactagagtgtgtgat 36359763  T
Q  120 ctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  36359764 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgttaacatttcaaaggctccacaaactcactagtatact 36359863  T
Q  220 ccaag 224  Q
    |||||    
T  36359864 ccaag 36359868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 36354478 - 36354712
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||    
T  36354478 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactatttctgagctctcaatttataaagaggatttctactagagtgtgtgat 36354577  T
Q  120 ctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  36354578 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgttaacattccaaaggctccacaaattcactagtatact 36354677  T
Q  220 ccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    |||||         |||||||||||||||||||||||||    
T  36354678 ccaagttttt----cattatacactagtgttccaacaat 36354712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 103 - 224
Target Start/End: Original strand, 53798329 - 53798450
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  53798329 ctactagagtgtgtgatctacccaatgtaggacataaaattttcaattcacactttacactagtttctccattcttgtgtttacattccaaaggctccac 53798428  T
Q  203 aaactcactagtatactccaag 224  Q
    ||||  ||||||||||||||||    
T  53798429 aaaccaactagtatactccaag 53798450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 103 - 224
Target Start/End: Original strand, 41393858 - 41393979
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  41393858 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttttccatccttgtgtttacattccaaaggcttcac 41393957  T
Q  203 aaactcactagtatactccaag 224  Q
    | |   ||||||||||||||||    
T  41393958 ataacaactagtatactccaag 41393979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 51018853 - 51018732
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||    
T  51018853 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtgtacattccaaagtctccac 51018754  T
Q  203 aaactcactagtatactccaag 224  Q
    | |   ||||||||| ||||||    
T  51018753 ataacaactagtatattccaag 51018732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 103 - 260
Target Start/End: Complemental strand, 9763420 - 9763265
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||  | |||||||||||| |||||||||||||  |||||||||||||||| |||||||||||||||||||||||| ||||||    
T  9763420 ctactagagtgtgtgatctactcaatgtgggacataaaattttcaattcatgctttacactagtttctacatccttgtgtttacattccaaagtctccac 9763321  T
Q  203 aaactcactagtatactccaagnnnnnnnnccattatacactagtgttccaacaatta 260  Q
    | |   ||||||||||||||||        ||| ||||||||||||||||||||||||    
T  9763320 ataacaactagtatactccaag--tttatgccaatatacactagtgttccaacaatta 9763265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 103 - 258
Target Start/End: Original strand, 13695757 - 13695910
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  13695757 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 13695856  T
Q  203 aaactcactagtatactccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    | |   ||||||||||||||||        ||| ||||||||||||||||||||||    
T  13695857 ataacaactagtatactccaag--tttttgccaatatacactagtgttccaacaat 13695910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 103 - 258
Target Start/End: Original strand, 13711370 - 13711523
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  13711370 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 13711469  T
Q  203 aaactcactagtatactccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    | |   ||||||||||||||||        ||| ||||||||||||||||||||||    
T  13711470 ataacaactagtatactccaag--tttttgccaatatacactagtgttccaacaat 13711523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 103 - 258
Target Start/End: Original strand, 4207042 - 4207194
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| | |||| |    
T  4207042 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtg-ttacattccaatgtctcctc 4207140  T
Q  203 aaactcactagtatactccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    | |   ||||||||||||||||        ||| ||||||||||||||||||||||    
T  4207141 ataacaactagtatactccaag--tttttgccaatatacactagtgttccaacaat 4207194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 47045767 - 47045647
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||   || |||||||||||||| || | |||| |    
T  47045767 ctactagagtgtgtgatctatccaatgtgggacataaaattttcaattcacactttacactagtttctatttcattgtgtttacattctaatgtctcctc 47045668  T
Q  203 aaactcactagtatactccaa 223  Q
    | |   |||||||||||||||    
T  47045667 ataacaactagtatactccaa 47045647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 13695431 - 13695503
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||| | |||||||||||||| |||||||    
T  13695431 gagaaaaccagagaagagtattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 13695503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 9763843 - 9763771
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||| ||||||||||| |||||||||| |||||||| | |||||||||||| |||||||    
T  9763843 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaataccaatcccgagctctctatttata 9763771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 41393512 - 41393584
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||| ||||||||||| |||||||||| |||||| | |||||||||||||| |||||||    
T  41393512 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 41393584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 53797898 - 53797970
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||| ||||||||||| |||||||||| |||||| ||| |||||||||||| |||||||    
T  53797898 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatgctaatcccgagctctctatttata 53797970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 257 - 351
Target Start/End: Original strand, 21237295 - 21237389
Alignment:
Q  257 attagttatttaccaggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggag 351  Q
    |||||||  ||||||||| |||||| |||| ||||||| | |||||||||||||| ||||||  ||||||||||||| ||||||| |||||||||    
T  21237295 attagttccttaccaggtaatgtaacagaccagattctcttacacttgccaattaaggaagcattgagaacaagtgtattatccagcaaatggag 21237389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 51019199 - 51019117
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggattt 102  Q
    |||||||||||||||||| ||||||||||| |||||||||| |||||| | ||||||||| |||| |||||||  ||||||||    
T  51019199 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgaggtctctatttatagagaggattt 51019117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 13710938 - 13711010
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||| ||||||||||  |||||||||| |||||| | |||||||||||||| |||||||    
T  13710938 gagaaaaccagagaagaggattcgattcttggttttggagtgaagaatcccattcccgagctctctatttata 13711010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 47046132 - 47046060
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||  ||||||||||| |||||||||| |||||| | |||||||||||||| |||||||    
T  47046132 gagaaaaccagagaagatgattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 47046060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 3833 - 4083
Alignment:
Q  7 ggagcagagaggagagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctac 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3833 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 3932  T
Q  107 tagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 206  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3933 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 4032  T
Q  207 tcactagtatactccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    ||||||||||||||||||         |||||||||||||||||||||||||    
T  4033 tcactagtatactccaagtttttttt-cattatacactagtgttccaacaat 4083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 258
Target Start/End: Complemental strand, 22703191 - 22702942
Alignment:
Q  7 ggagcagagaggagagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctac 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22703191 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 22703092  T
Q  107 tagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 206  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22703091 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 22702992  T
Q  207 tcactagtatactccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    ||||||||||||||||||         |||||||||||||||||||||||||    
T  22702991 tcactagtatactccaagttttttt--cattatacactagtgttccaacaat 22702942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 22698002 - 22697798
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22698002 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 22697903  T
Q  120 ctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22697902 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 22697803  T
Q  220 ccaag 224  Q
    |||||    
T  22697802 ccaag 22697798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 21402011 - 21402260
Alignment:
Q  7 ggagcagagaggagagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctac 106  Q
    |||| |||||||||||||||||| |||||||||||||||||| |||||| |||| | ||||||||||||| |||||||||||||||||||||||||||||    
T  21402011 ggagaagagaggagagaaaaccaaagaagagtattcgattcttagtttttgagtgatgaatactattcccaagctctcaatttataaggaggatttctac 21402110  T
Q  107 tagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 206  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21402111 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 21402210  T
Q  207 tcactagtatactccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    |||||| |||||||||||         |||||||||||||||||||||||||    
T  21402211 tcactactatactccaagttttttt--cattatacactagtgttccaacaat 21402260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 80 - 224
Target Start/End: Complemental strand, 29490982 - 29490838
Alignment:
Q  80 ctctcaatttataaggaggatttctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttg 179  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29490982 ctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttg 29490883  T
Q  180 tgtttacattccaaaggctccacaaactcactagtatactccaag 224  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  29490882 tgtttacattccaaaagctccacaaactcactagtatactccaag 29490838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 103 - 258
Target Start/End: Complemental strand, 2817548 - 2817395
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2817548 ctactagagtgtgtgatctacccaatgtgggacattaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 2817449  T
Q  203 aaactcactagtatactccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    | |   ||||||||||||||||        ||| ||||||||||||||||||||||    
T  2817448 ataacaactagtatactccaag--tttttgccaatatacactagtgttccaacaat 2817395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 103 - 260
Target Start/End: Original strand, 34142781 - 34142936
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  34142781 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacattccaaagtctccac 34142880  T
Q  203 aaactcactagtatactccaagnnnnnnnnccattatacactagtgttccaacaatta 260  Q
    | |   ||||||||||||||||        ||| ||||||||||||||||||||||||    
T  34142881 ataacaactagtatactccaag--tttttgccaatatacactagtgttccaacaatta 34142936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 103 - 260
Target Start/End: Original strand, 34155397 - 34155552
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  34155397 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacattccaaagtctccac 34155496  T
Q  203 aaactcactagtatactccaagnnnnnnnnccattatacactagtgttccaacaatta 260  Q
    | |   ||||||||||||||||        ||| ||||||||||||||||||||||||    
T  34155497 ataacaactagtatactccaag--tttttgccaatatacactagtgttccaacaatta 34155552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 6727924 - 6727803
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||| ||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  6727924 ctactagagtgtgtgatctacccaatgtggaacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 6727825  T
Q  203 aaactcactagtatactccaag 224  Q
    | |   ||||||||||||||||    
T  6727824 ataacaactagtatactccaag 6727803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 103 - 224
Target Start/End: Original strand, 34376464 - 34376585
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||| ||||| || |||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  34376464 ctactagagtgtgttatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 34376563  T
Q  203 aaactcactagtatactccaag 224  Q
    | |   ||||||||||||||||    
T  34376564 ataacaactagtatactccaag 34376585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 103 - 258
Target Start/End: Complemental strand, 24190802 - 24190648
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataa-ttttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctcca 201  Q
    |||||||||||||||||||| || |||||||||||| || ||||||||||||||||||||||||||||| |||| ||||||||||||||||| | ||||     
T  24190802 ctactagagtgtgtgatctacccaatgtgggacataaaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcct 24190703  T
Q  202 caaactcactagtatactccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    || |   ||||||||||||||||        ||| ||||||||||||||||||||||    
T  24190702 cataacaactagtatactccaag--tttttgccaatatacactagtgttccaacaat 24190648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 103 - 224
Target Start/End: Original strand, 31983475 - 31983596
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || ||| |||||||| ||||||||||||||||||||||||| ||||| |||| ||||||||||||||||| | |||| |    
T  31983475 ctactagagtgtgtgatctacccaatgcgggacataaaattttcaattcacactttacactaatttctacatcattgtgtttacattccaatgtctcctc 31983574  T
Q  203 aaactcactagtatactccaag 224  Q
    | |   ||||||||||||||||    
T  31983575 ataaaaactagtatactccaag 31983596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 31981832 - 31981904
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||| | |||||||||||| |||||||    
T  31981832 gagaaaaccagagaagagtattcgattctcggttttggagtgaagaataccaatcccgagctctctatttata 31981904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 34376198 - 34376270
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||| ||||||||||| |||||||||| |||||| | |||||||||||||| |||||||    
T  34376198 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 34376270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 2817973 - 2817901
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||| ||||||||||  |||||||||||||||||   |||||||||||||| |||||||    
T  2817973 gagaaaaccagagaagaggattcgattcttggttttggagtaaagaatctcattcccgagctctctatttata 2817901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 24191198 - 24191126
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||| ||||||||||  |||||||||| |||||| | |||||||||||||| |||||||    
T  24191198 gagaaaaccagagaagaggattcgattcttggttttggagtgaagaatcccattcccgagctctctatttata 24191126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 24192295 - 24192223
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||| ||||||||||  |||||||||| |||||| | |||||||||||||| |||||||    
T  24192295 gagaaaaccagagaagaggattcgattcttggttttggagtgaagaatcccattcccgagctctctatttata 24192223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 34142358 - 34142418
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagc 80  Q
    |||||||||||||||||| ||||||||||| |||||||||| |||||| | ||||||||||    
T  34142358 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatccaattcccgagc 34142418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 34154974 - 34155034
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagc 80  Q
    |||||||||||||||||| ||||||||||| |||||||||| |||||| | ||||||||||    
T  34154974 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatccaattcccgagc 34155034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 29491061 - 29491008
Alignment:
Q  7 ggagcagagaggagagaaaaccagagaagagtattcgattctcagttttggagt 60  Q
    |||| |||||||||| |||| |||||||||||||| ||||||||||||||||||    
T  29491061 ggagaagagaggagataaaatcagagaagagtatttgattctcagttttggagt 29491008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 6728255 - 6728193
Alignment:
Q  30 gagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||| | ||||||||||| |||||||||| |||||| | |||||||||||||| |||||||    
T  6728255 gagaaggggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 6728193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 27711593 - 27711842
Alignment:
Q  7 ggagcagagaggagagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctac 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27711593 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 27711692  T
Q  107 tagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 206  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27711693 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 27711792  T
Q  207 tcactagtatactccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    ||||||||||||||||||         |||||||||||||||||||||||||    
T  27711793 tcactagtatactccaagttttttt--cattatacactagtgttccaacaat 27711842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 258
Target Start/End: Complemental strand, 37404243 - 37403993
Alignment:
Q  7 ggagcagagaggagagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctac 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  37404243 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgggctctcaatttataaggaggatttctac 37404144  T
Q  107 tagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 206  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37404143 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 37404044  T
Q  207 tcactagtatactccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    ||||||||||||||||||         |||||||||||||||||||||||||    
T  37404043 tcactagtatactccaagtttttttt-cattatacactagtgttccaacaat 37403993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 258
Target Start/End: Complemental strand, 37409362 - 37409112
Alignment:
Q  7 ggagcagagaggagagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctac 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  37409362 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttatac 37409263  T
Q  107 tagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 206  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37409262 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 37409163  T
Q  207 tcactagtatactccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    ||||||||||||||||||         |||||||||||||||||||||||||    
T  37409162 tcactagtatactccaagtttttttt-cattatacactagtgttccaacaat 37409112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 36684474 - 36684270
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36684474 gagaaaaccagagaagagtattcgattctcagttttggagtcaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 36684375  T
Q  120 ctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36684374 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 36684275  T
Q  220 ccaag 224  Q
    |||||    
T  36684274 ccaag 36684270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 255
Target Start/End: Complemental strand, 11250948 - 11250701
Alignment:
Q  7 ggagcagagaggagagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctac 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11250948 ggagaagagaggagagaaaaccagagaagagtattcgattctcaattttggagtaaagaatactattcacgagctctcaatttataaggaggatttctac 11250849  T
Q  107 tagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 206  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11250848 tagagtgtgtgatctaaccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaagactccacaaac 11250749  T
Q  207 tcactagtatactccaagnnnnnnnnccattatacactagtgttccaac 255  Q
    ||||| ||||||||||||        |||||||||||||||||||||||    
T  11250748 tcactggtatactccaag-tttttttccattatacactagtgttccaac 11250701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 21 - 224
Target Start/End: Complemental strand, 34318043 - 34317840
Alignment:
Q  21 agaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatc 120  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34318043 agaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatc 34317944  T
Q  121 tatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactc 220  Q
    || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34317943 tacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactc 34317844  T
Q  221 caag 224  Q
    ||||    
T  34317843 caag 34317840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 7 - 257
Target Start/End: Original strand, 27716713 - 27716963
Alignment:
Q  7 ggagcagagaggagagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctac 106  Q
    |||| |||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27716713 ggagaagagaggagagaaaaccagataagagtattcgattatcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 27716812  T
Q  107 tagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 206  Q
    |||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  27716813 tagagtgtgtgatctacccgatgtgggacataaaaatttcaattcacactttacactagtttctccatccttgtgcttacgttccaaaggctccacaaac 27716912  T
Q  207 tcactagtatactccaagnnnnnnnnccattatacactagtgttccaacaa 257  Q
    ||||||||||||||||||        |||||||||||||||||||||||||    
T  27716913 tcactagtatactccaagttttttttccattatacactagtgttccaacaa 27716963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 103 - 258
Target Start/End: Original strand, 5725365 - 5725518
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5725365 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 5725464  T
Q  203 aaactcactagtatactccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    ||||  ||||||||||||||||        ||||||||||||||||||||||||||    
T  5725465 aaaccaactagtatactccaag--ttttttccattatacactagtgttccaacaat 5725518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 103 - 264
Target Start/End: Original strand, 3585301 - 3585460
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3585301 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacattttacactagtttctccatccttgtgtttacattccaaaggctccac 3585400  T
Q  203 aaactcactagtatactccaagnnnnnnnnccattatacactagtgttccaacaattagtta 264  Q
    ||||  ||||||||||||||||        ||| |||||||||||||||||||| |||||||    
T  3585401 aaaccaactagtatactccaag--ttttttccaatatacactagtgttccaacagttagtta 3585460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 256 - 359
Target Start/End: Original strand, 2006213 - 2006316
Alignment:
Q  256 aattagttatttaccaggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggaggtac 355  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2006213 aattagttatttactaggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggaggtac 2006312  T
Q  356 aaat 359  Q
    ||||    
T  2006313 aaat 2006316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 103 - 223
Target Start/End: Original strand, 5730771 - 5730891
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  5730771 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggtttcac 5730870  T
Q  203 aaactcactagtatactccaa 223  Q
    ||||  |||||||||||||||    
T  5730871 aaaccaactagtatactccaa 5730891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 48246119 - 48245998
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||||||||| || ||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  48246119 ctactagagtgtgtgatctacccaatgtgggacataaaaattttaattcacactttacactagtttctacatccttgtgtttacattccaaagtctccac 48246020  T
Q  203 aaactcactagtatactccaag 224  Q
    | |   ||||||||||||||||    
T  48246019 ataacaactagtatactccaag 48245998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 256 - 359
Target Start/End: Original strand, 2019530 - 2019633
Alignment:
Q  256 aattagttatttaccaggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggaggtac 355  Q
    |||||||| |||||| |||||||||||||||   ||| ||| || |||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  2019530 aattagttgtttaccgggtgatgtaatagaccgaattttgttacgcttgcctattagggacgctgtgagaacaagtgttttatccaacaaatggaggtac 2019629  T
Q  356 aaat 359  Q
    ||||    
T  2019630 aaat 2019633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 165 - 256
Target Start/End: Complemental strand, 50959069 - 50958978
Alignment:
Q  165 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnnnccattatacactagtgttccaaca 256  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||    
T  50959069 gtttctccattcttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttcctccattatacactagtgttccaaca 50958978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 359
Target Start/End: Original strand, 2011721 - 2011824
Alignment:
Q  256 aattagttatttaccaggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggaggtac 355  Q
    |||||||  ||||||||||||||||||||||  |||| |||||  ||||||||||||||| | ||||||||||||| ||||||| |||||||||||||||    
T  2011721 aattagtgttttaccaggtgatgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagtattttatcaaacaaatggaggtac 2011820  T
Q  356 aaat 359  Q
    ||||    
T  2011821 aaat 2011824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 256 - 359
Target Start/End: Original strand, 2010311 - 2010414
Alignment:
Q  256 aattagttatttaccaggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggaggtac 355  Q
    |||||||| |||||| |||||||||||||||   ||| ||| || |||||| |||||||| | |||||||||||||||||||| ||||||||||||||||    
T  2010311 aattagttgtttaccgggtgatgtaatagaccgaattttgttacgcttgcctattagggacgttgtgagaacaagtgttttatgcaacaaatggaggtac 2010410  T
Q  356 aaat 359  Q
    ||||    
T  2010411 aaat 2010414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 256 - 341
Target Start/End: Complemental strand, 3218794 - 3218709
Alignment:
Q  256 aattagttatttaccaggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatcca 341  Q
    ||||||||  ||||||||| ||||||||||  ||||||| ||| ||||||||||||||||||| |||| |||||||||||| ||||    
T  3218794 aattagttgcttaccaggtcatgtaatagatcagattctctcatacttgccaattagggaagcagtgaaaacaagtgttttgtcca 3218709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 5730374 - 5730446
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||| ||||||||||| |||||||||| |||||| | | |||||||||||| |||||||    
T  5730374 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatgcaaatcccgagctctctatttata 5730446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 256 - 359
Target Start/End: Original strand, 3372449 - 3372552
Alignment:
Q  256 aattagttatttaccaggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggaggtac 355  Q
    ||||||||  ||||||||| ||||||||||  ||||||| |||| | |||||||||  ||||| |||||||||||||||||||||| ||  |||||| ||    
T  3372449 aattagttgcttaccaggtcatgtaatagatcagattctctcactcatgccaattaaagaagcagtgagaacaagtgttttatccagcagctggaggaac 3372548  T
Q  356 aaat 359  Q
    ||||    
T  3372549 aaat 3372552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 256 - 359
Target Start/End: Complemental strand, 6602027 - 6601924
Alignment:
Q  256 aattagttatttaccaggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggaggtac 355  Q
    |||||||  |||||||||| || |||||||| | ||||| |||   |||||||||| |||||| |||||||||||| ||||||| | |||||||||||||    
T  6602027 aattagtagtttaccaggtcatataatagaccaaattctctcaattttgccaattaaggaagcagtgagaacaagtattttatcaaccaaatggaggtac 6601928  T
Q  356 aaat 359  Q
    ||||    
T  6601927 aaat 6601924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 276 - 361
Target Start/End: Complemental strand, 3345423 - 3345338
Alignment:
Q  276 atgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggaggtacaaattg 361  Q
    ||||| ||||| ||||||| ||  ||||||||||||||||||| ||||||| ||||||| ||||||| ||||||||  ||||||||    
T  3345423 atgtagtagaccagattctatcttacttgccaattagggaagcagtgagaataagtgttatatccaaaaaatggagaaacaaattg 3345338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 3584870 - 3584942
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||| ||||||||||| |||||||||| |||||| | | ||| |||||||| |||||||    
T  3584870 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatgcaaatcctgagctctctatttata 3584942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 351
Target Start/End: Original strand, 3361477 - 3361572
Alignment:
Q  256 aattagttatttaccaggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggag 351  Q
    ||||||||  ||||||| | | ||||||||| ||||  ||||| |||||||||| | |||||| |||||||||||| ||||||||| |||||||||    
T  3361477 aattagttgcttaccagatcacgtaatagaccagatcttgtcatacttgccaatcaaggaagcagtgagaacaagtattttatccagcaaatggag 3361572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 48246509 - 48246427
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggattt 102  Q
    |||||||||||||||||| ||||||||||| |||||| ||| |||||| | ||| ||||| |||| |||||||  ||||||||    
T  48246509 gagaaaaccagagaagaggattcgattctcggttttgtagtgaagaatcccatttccgaggtctctatttatagagaggattt 48246427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 4335284 - 4335204
Alignment:
Q  256 aattagttatttaccaggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgtttt 336  Q
    ||||||||  ||||||||| ||||||||||| ||||| ||||  | ||||| |||||||| || |||||||||||||||||    
T  4335284 aattagttggttaccaggtcatgtaatagaccagattatgtcttatttgccgattagggacgcggtgagaacaagtgtttt 4335204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 3340300 - 3340350
Alignment:
Q  289 gattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatc 339  Q
    |||||| ||||||||| |||||| |||||| || |||||||||||||||||    
T  3340300 gattctctcacacttgtcaattaaggaagcagtaagaacaagtgttttatc 3340350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 4323385 - 4323305
Alignment:
Q  256 aattagttatttaccaggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgtttt 336  Q
    ||||||||  || |||||| |||||| |||  ||||| ||||  ||||||| |||||||| || |||||||||||||||||    
T  4323385 aattagttggttgccaggtcatgtaacagatcagattatgtcttacttgccgattagggacgcagtgagaacaagtgtttt 4323305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 17510328 - 17510545
Alignment:
Q  7 ggagcagagaggagagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctac 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17510328 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 17510427  T
Q  107 tagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 206  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17510428 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 17510527  T
Q  207 tcactagtatactccaag 224  Q
    ||||||||||||||||||    
T  17510528 tcactagtatactccaag 17510545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 17505223 - 17505474
Alignment:
Q  7 ggagcagagaggagagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctac 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17505223 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 17505322  T
Q  107 tagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 206  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  17505323 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacaatagtttttccatccttgtgtttacattccaaaggctccacaaac 17505422  T
Q  207 tcactagtatactccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    ||||||||||| ||||||        ||||||||||||||||||||||||||    
T  17505423 tcactagtatattccaagttttttttccattatacactagtgttccaacaat 17505474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 42019843 - 42020092
Alignment:
Q  7 ggagcagagaggagagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctac 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  42019843 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 42019942  T
Q  107 tagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 206  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42019943 tagagtgtgtgatctatccgatgtgggacataaaattttcaattcacattttacattagtttctccatccttgtgtttacattccaaaggctccacaaac 42020042  T
Q  207 tcactagtatactccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    ||||||||||||||||||         |||||||||||||||||||||||||    
T  42020043 tcactagtatactccaagttttttt--cattatacactagtgttccaacaat 42020092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 43579930 - 43580181
Alignment:
Q  7 ggagcagagaggagagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctac 106  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||    
T  43579930 ggagaagagaggagagaaaatcagagaagagtattcgattctcagttttggtgtgaaaaatactattcccgagctctcaatttataaggaggatttctac 43580029  T
Q  107 tagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 206  Q
    |||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43580030 tagagtatgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 43580129  T
Q  207 tcactagtatactccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    ||||||||||||||||||        ||||||||||||||||||||||||||    
T  43580130 tcactagtatactccaagtttttcctccattatacactagtgttccaacaat 43580181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 42024623 - 42024840
Alignment:
Q  7 ggagcagagaggagagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctac 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  42024623 ggagaagagaggagagaaaaccagagaagagtattcgattctcaattttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 42024722  T
Q  107 tagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 206  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42024723 tagagtgtgtgatctatccgatgtgggacataaaattttcaattcacattttacactagtttctccatccttatgtttacattccaaaggctccacaaac 42024822  T
Q  207 tcactagtatactccaag 224  Q
    ||||||||||||| ||||    
T  42024823 tcactagtatacttcaag 42024840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 12 - 257
Target Start/End: Original strand, 41858861 - 41859103
Alignment:
Q  12 agagaggagagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagag 111  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41858861 agagagaagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggagaatttctactagag 41858960  T
Q  112 tgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcact 211  Q
    ||||  ||||| ||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  41858961 tgtg--atctacccgatgtgggacatagaattttcaattcacactttacactaatttttccatccttgtgtttacattccaaaggctccacaaactcact 41859058  T
Q  212 agtatactccaagnnnnnnnnccattatacactagtgttccaacaa 257  Q
    |||||||||||||        |||||||||||||||||||||||||    
T  41859059 agtatactccaag-tttttttccattatacactagtgttccaacaa 41859103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 114 - 258
Target Start/End: Original strand, 41853846 - 41853990
Alignment:
Q  114 tgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactag 213  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41853846 tgtgatctacccgatgtgggacatagaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactccctag 41853945  T
Q  214 tatactccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    |||||||||||        ||||||||||||||||||||||||||    
T  41853946 tatactccaagttttttttccattatacactagtgttccaacaat 41853990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 1413220 - 1413100
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||  | |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1413220 ctactagagtgtgtgatctactcaatgtgggacataaaattttcaattcacactttacactagtttcttcatccttgtgtttacattccaaaggctccac 1413121  T
Q  203 aaactcactagtatactccaa 223  Q
    | |   |||||||||||||||    
T  1413120 ataacaactagtatactccaa 1413100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 103 - 224
Target Start/End: Original strand, 36254517 - 36254638
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||    
T  36254517 ctactagagtgtgtgatctacccaatgtggaacataaaattttcaattcacactttacactagtttctacatccttgtgtttacattccaatgtctccac 36254616  T
Q  203 aaactcactagtatactccaag 224  Q
    | |   ||||||||||||||||    
T  36254617 ataacaactagtatactccaag 36254638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 24770752 - 24770631
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  24770752 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 24770653  T
Q  203 aaactcactagtatactccaag 224  Q
    | |   ||||||||||||||||    
T  24770652 ataacaactagtatactccaag 24770631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 127 - 219
Target Start/End: Original strand, 26709712 - 26709804
Alignment:
Q  127 atgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||  |||||||||||    
T  26709712 atgtgggacataaaattttcaattcacactttacactagtttctccattcttgtgtttacattccataggctccacaaaccaactagtatact 26709804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 127 - 219
Target Start/End: Original strand, 26979446 - 26979538
Alignment:
Q  127 atgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||  |||||||||||    
T  26979446 atgtgggacataaaattttcaattcacactttacactagtttctccattcttgtgtttacattccataggctccacaaaccaactagtatact 26979538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 103 - 193
Target Start/End: Complemental strand, 24776206 - 24776116
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 193  Q
    |||||||||||||||||||| || |||||||||||| |||||||||||||||||||| |||||||||| |||| |||||||||||||||||    
T  24776206 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttatactagtttctacatcattgtgtttacattccaa 24776116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 24776635 - 24776563
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| | ||| |||||||| |||||||    
T  24776635 gagaaaaccagagaagagtattcgattctcggttttggagtaaagaataccaatcctgagctctctatttata 24776563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 1413878 - 1413806
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||| ||||||||||| |||||||||| |||||| | |||||||||||||| |||||||    
T  1413878 gagaaaaccagataagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 1413806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 24771180 - 24771108
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    ||||||||||||||||||| || ||||||  ||||||||||||||||||| | ||| |||||||| |||||||    
T  24771180 gagaaaaccagagaagagtgtttgattcttggttttggagtaaagaataccaatcctgagctctctatttata 24771108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 26709372 - 26709444
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||| ||||||| |||| ||||||||||||||||| |||||| | | |||||||||||| |||||||    
T  26709372 gagaaaaccaaagaagaggattcaattctcagttttggagtgaagaatgcaaatcccgagctctctatttata 26709444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 26979106 - 26979178
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||| ||||||| |||| ||||||||||||||||| |||||| | | |||||||||||| |||||||    
T  26979106 gagaaaaccaaagaagaggattcaattctcagttttggagtgaagaatgcaaatcccgagctctctatttata 26979178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 36254105 - 36254177
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||| ||||||||| ||||||||||| |||||||||| |||||| | |||||| ||||||| |||||||    
T  36254105 gagaaaactagagaagaggattcgattctcggttttggagtgaagaatcccattcccaagctctctatttata 36254177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 252
Target Start/End: Original strand, 55129060 - 55129304
Alignment:
Q  7 ggagcagagaggagagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctac 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  55129060 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 55129159  T
Q  107 tagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 206  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  55129160 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat-cttgtgtttacattccaaaggctccacaaac 55129258  T
Q  207 tcactagtatactccaagnnnnnnnnccattatacactagtgttcc 252  Q
    ||||||||||||||||||        ||||||||||||||||||||    
T  55129259 tcactagtatactccaagttttttttccattatacactagtgttcc 55129304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 258
Target Start/End: Complemental strand, 15767950 - 15767715
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15767950 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 15767851  T
Q  120 ctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  15767850 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatact 15767751  T
Q  220 ccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    |||||         |||||||||||||||||||||||||    
T  15767750 ccaagtttttt---cattatacactagtgttccaacaat 15767715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 217
Target Start/End: Original strand, 17368989 - 17369199
Alignment:
Q  7 ggagcagagaggagagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctac 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17368989 ggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 17369088  T
Q  107 tagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 206  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17369089 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 17369188  T
Q  207 tcactagtata 217  Q
      |||||||||    
T  17369189 caactagtata 17369199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 15762789 - 15762585
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15762789 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 15762690  T
Q  120 ctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  15762689 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatact 15762590  T
Q  220 ccaag 224  Q
    |||||    
T  15762589 ccaag 15762585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 20 - 258
Target Start/End: Complemental strand, 20095546 - 20095310
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20095546 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 20095447  T
Q  120 ctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||    
T  20095446 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatcctgatgtttacatgccaaaggctccacaaactcactagtatact 20095347  T
Q  220 ccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    |||||         |||||||||||||||||||||||||    
T  20095346 ccaagttttttt--cattatacactagtgttccaacaat 20095310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 20090421 - 20090186
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20090421 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 20090322  T
Q  120 ctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||    
T  20090321 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatcctgatgtttacatgccaaaggctccacaaactcactagtatact 20090222  T
Q  220 ccaagnnnnnnnnccattatacactagtgttccaacaa 257  Q
    |||||         ||||||||||||||||||||||||    
T  20090221 ccaagttttttt--cattatacactagtgttccaacaa 20090186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 103 - 258
Target Start/End: Complemental strand, 3481796 - 3481643
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3481796 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 3481697  T
Q  203 aaactcactagtatactccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    ||||||||||||||||||||||         |||||||||||||||||||||||||    
T  3481696 aaactcactagtatactccaagttttttt--cattatacactagtgttccaacaat 3481643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 103 - 256
Target Start/End: Complemental strand, 34128558 - 34128405
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34128558 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 34128459  T
Q  203 aaactcactagtatactccaagnnnnnnnnccattatacactagtgttccaaca 256  Q
    |||   ||||||||||||||||        ||||||||||||||||||||||||    
T  34128458 aaatcaactagtatactccaagttttttttccattatacactagtgttccaaca 34128405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 103 - 224
Target Start/End: Original strand, 17358566 - 17358686
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17358566 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacacta-tttctccatccttgtgtttacattccaaaggctccac 17358664  T
Q  203 aaactcactagtatactccaag 224  Q
    ||||  ||||||||| ||||||    
T  17358665 aaaccaactagtataatccaag 17358686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 30338247 - 30338126
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30338247 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactaatttctccatccttgtgtttacattccaaaggctccac 30338148  T
Q  203 aaactcactagtatactccaag 224  Q
    | |   ||||||||||||||||    
T  30338147 ataacaactagtatactccaag 30338126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 30341351 - 30341230
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| |  ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30341351 ctactagagtgtgtgatctacctaatgtgggccataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 30341252  T
Q  203 aaactcactagtatactccaag 224  Q
    | |   ||||||||||||||||    
T  30341251 ataacaactagtatactccaag 30341230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 103 - 224
Target Start/End: Original strand, 54271312 - 54271433
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  54271312 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttagactagtttctccatccttgtgtttacattccaaaggctccac 54271411  T
Q  203 aaactcactagtatactccaag 224  Q
    | |   ||||||||||| ||||    
T  54271412 ataacaactagtatacttcaag 54271433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 103 - 193
Target Start/End: Complemental strand, 3476339 - 3476249
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 193  Q
    |||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  3476339 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaa 3476249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 103 - 193
Target Start/End: Complemental strand, 4117097 - 4117007
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 193  Q
    |||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  4117097 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttcttcatcattgtgtttacattccaa 4117007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 17358107 - 17358179
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||| | | |||||||||||| |||||||    
T  17358107 gagaaaaccagagaagaggattcgattctcagttttggagtgaagaatgcaaatcccgagctctctatttata 17358179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 54270914 - 54270986
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||| ||||||||||| |||||||||| |||||| | |||||||||||||| |||||||    
T  54270914 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 54270986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 3482238 - 3482166
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||| ||||| ||||||||||| |||||||||| |||||| | |||||||||||||| |||||||    
T  3482238 gagaaaaccagataagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 3482166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 4117417 - 4117345
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||| ||||||| ||||||||||| |||||||||| |||||| | |||||||||||||| |||||||    
T  4117417 gagaaaaccaaagaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 4117345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 30338578 - 30338506
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||| ||||||||||| |||||||||| |||||| | | |||||||||||| |||||||    
T  30338578 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatccaaatcccgagctctctatttata 30338506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 34128995 - 34128923
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||| | | |||||| ||||| |||||||    
T  34128995 gagaaaaccagagaagaggattcgattctcagttttggagtgaagaatgcaaatcccgacctctctatttata 34128923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 3476771 - 3476699
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||| ||||||||||   ||||||||| |||||| | |||||||||||||| |||||||    
T  3476771 gagaaaaccagagaagaggattcgattcttgtttttggagtgaagaatcccattcccgagctctctatttata 3476699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 10321712 - 10321784
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    ||||||||| |||||||| |||| |||||| |||||||||| |||||| | | |||||||||||| |||||||    
T  10321712 gagaaaacctgagaagaggattcaattctcggttttggagtgaagaatgcaaatcccgagctctctatttata 10321784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 10321816 - 10321861
Alignment:
Q  22 gaaaaccagagaagagtattcgattctcagttttggagtaaagaat 67  Q
    |||||||||||||||| ||||||||||| ||||||| || ||||||    
T  10321816 gaaaaccagagaagaggattcgattctcggttttggggtgaagaat 10321861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 33238338 - 33238574
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33238338 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 33238437  T
Q  120 ctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33238438 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 33238537  T
Q  220 ccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    |||||         |||||||||||||||||||||||||    
T  33238538 ccaagttttttt--cattatacactagtgttccaacaat 33238574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 47994136 - 47994340
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47994136 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 47994235  T
Q  120 ctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47994236 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 47994335  T
Q  220 ccaag 224  Q
    |||||    
T  47994336 ccaag 47994340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 33243515 - 33243750
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33243515 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 33243614  T
Q  120 ctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33243615 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacatgccaaaggctccacaaactcactagtatact 33243714  T
Q  220 ccaagnnnnnnnnccattatacactagtgttccaacaa 257  Q
    |||||         ||||||||||||||||||||||||    
T  33243715 ccaagttttttt--cattatacactagtgttccaacaa 33243750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 47999311 - 47999546
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47999311 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 47999410  T
Q  120 ctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  47999411 ctacccgatgtgagacataaaattttcaattcacactttacactagtttctccatccttatgtttacattccaaaggctccacaaactcactaatatact 47999510  T
Q  220 ccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    |||||        ||| ||||||||||||||||||||||    
T  47999511 ccaag---tttttccaatatacactagtgttccaacaat 47999546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 103 - 258
Target Start/End: Complemental strand, 21080468 - 21080315
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21080468 ctactagagtgtgtgatctacccaacgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 21080369  T
Q  203 aaactcactagtatactccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    ||||  ||||||||||||||||        ||||||||||||||||||||||||||    
T  21080368 aaaccaactagtatactccaag--ttttttccattatacactagtgttccaacaat 21080315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 2234099 - 2233978
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2234099 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttcttcatccttgtgtttacattccaaaggctccac 2234000  T
Q  203 aaactcactagtatactccaag 224  Q
    ||||  ||||||||||||||||    
T  2233999 aaaccaactagtatactccaag 2233978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 19309023 - 19308902
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  19309023 ctactagagtgtgtgatctatccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 19308924  T
Q  203 aaactcactagtatactccaag 224  Q
    | |   ||||||||||||||||    
T  19308923 ataacaactagtatactccaag 19308902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 103 - 224
Target Start/End: Original strand, 17496100 - 17496221
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  17496100 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 17496199  T
Q  203 aaactcactagtatactccaag 224  Q
    | |   ||||||||||||||||    
T  17496200 ataacaactagtatactccaag 17496221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 17557114 - 17556993
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  17557114 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 17557015  T
Q  203 aaactcactagtatactccaag 224  Q
    | |   ||||||||||||||||    
T  17557014 ataacaactagtatactccaag 17556993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 32212112 - 32211991
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  32212112 ctactagagtgtgtgatctacccaatgtgagacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaagtctcaac 32212013  T
Q  203 aaactcactagtatactccaag 224  Q
    | |   ||||||||||||||||    
T  32212012 ataacaactagtatactccaag 32211991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 103 - 224
Target Start/End: Original strand, 42572600 - 42572721
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  42572600 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 42572699  T
Q  203 aaactcactagtatactccaag 224  Q
    | |   ||||||||||||||||    
T  42572700 ataacaactagtatactccaag 42572721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 103 - 224
Target Start/End: Original strand, 12935084 - 12935205
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||| ||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  12935084 ctactaaagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 12935183  T
Q  203 aaactcactagtatactccaag 224  Q
    | |   ||||||||||||||||    
T  12935184 ataacaactagtatactccaag 12935205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 103 - 259
Target Start/End: Complemental strand, 47176643 - 47176489
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  47176643 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 47176544  T
Q  203 aaactcactagtatactccaagnnnnnnnnccattatacactagtgttccaacaatt 259  Q
    | |   ||||||||||||||||        ||| |||||||||||||||||||||||    
T  47176543 ataacaactagtatactccaag--tttttgccaatatacactagtgttccaacaatt 47176489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 110 - 224
Target Start/End: Complemental strand, 16538813 - 16538699
Alignment:
Q  110 agtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactca 209  Q
    |||||||||||||  | || ||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |   |    
T  16538813 agtgtgtgatctactcaatatgggacataaaattttcaattcacactttacactagtttctacatccttgtgtctacattccaaagtctccacataacaa 16538714  T
Q  210 ctagtatactccaag 224  Q
    |||||||||||||||    
T  16538713 ctagtatactccaag 16538699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 110 - 224
Target Start/End: Original strand, 16626849 - 16626963
Alignment:
Q  110 agtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactca 209  Q
    |||||||||||||  | || ||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |   |    
T  16626849 agtgtgtgatctactcaatatgggacataaaattttcaattcacactttacactagtttctacatccttgtgtctacattccaaagtctccacataacaa 16626948  T
Q  210 ctagtatactccaag 224  Q
    |||||||||||||||    
T  16626949 ctagtatactccaag 16626963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 103 - 224
Target Start/End: Original strand, 43893542 - 43893663
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || ||| |||||||| ||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| | |||| |    
T  43893542 ctactagagtgtgtgatctacccaatgagggacataaaattttcaattcacactttacgctagtttctacatcattgtgtttacattccaatgtctcctc 43893641  T
Q  203 aaactcactagtatactccaag 224  Q
    | |   ||||||||||||||||    
T  43893642 ataacaactagtatactccaag 43893663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 2234456 - 2234384
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||| ||||||||||| |||||||||| |||||||||| |||||||||||| |||||||    
T  2234456 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatactaatcccgagctctctatttata 2234384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 171 - 258
Target Start/End: Complemental strand, 47544828 - 47544743
Alignment:
Q  171 ccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||         |||||||||||||||||||||||||    
T  47544828 ccatccttgtgtttacattccaaaggctccacaaactctctagtatactccaagttttttt--cattatacactagtgttccaacaat 47544743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 12934666 - 12934738
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||| ||||||||||| |||||||||| |||||| | |||||||||||||| |||||||    
T  12934666 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 12934738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 17495672 - 17495744
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||| |||| |||||| ||||||||||||||||| | |||||||||||||| |||||||    
T  17495672 gagaaaaccagagaagaggattcaattctcggttttggagtaaagaatcccattcccgagctctctatttata 17495744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 17557542 - 17557470
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||| |||| |||||| ||||||||||||||||| | |||||||||||||| |||||||    
T  17557542 gagaaaaccagagaagaggattcaattctcggttttggagtaaagaatcccattcccgagctctctatttata 17557470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 19309437 - 19309365
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||| ||| ||||||| |||||||||| |||||| | |||||||||||||| |||||||    
T  19309437 gagaaaaccagagaagaggatttgattctcggttttggagtgaagaatcccattcccgagctctctatttata 19309365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 21080865 - 21080793
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||| |||||||||||||||||| ||| |||||| | | |||||||||||| |||||||    
T  21080865 gagaaaaccagagaagaggattcgattctcagttttgaagtgaagaatgcaaatcccgagctctctatttata 21080793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 42572214 - 42572286
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||| ||||||||||| |||||||||| |||||| | ||||||||| |||| |||||||    
T  42572214 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagttctctatttata 42572286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 43893138 - 43893210
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||| |||||||||||  ||||||||| |||||| | |||||||||||||| |||||||    
T  43893138 gagaaaaccagagaagaggattcgattctcgattttggagtgaagaatcccattcccgagctctctatttata 43893210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 16539238 - 16539166
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||| |||  |||||| |||||||||| |||||| | |||||||||||||| |||||||    
T  16539238 gagaaaaccagagaagaggatttaattctcggttttggagtgaagaatcccattcccgagctctctatttata 16539166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 16626424 - 16626496
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||| |||  |||||| |||||||||| |||||| | |||||||||||||| |||||||    
T  16626424 gagaaaaccagagaagaggatttaattctcggttttggagtgaagaatcccattcccgagctctctatttata 16626496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 47176976 - 47176904
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||| |||||||| || |||||||||| ||||||   |||||||||||||| |||||||    
T  47176976 gagaaaaccagagaagaggattcgattatcggttttggagtgaagaatctcattcccgagctctctatttata 47176904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 32212479 - 32212419
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagc 80  Q
    ||||||| |||||||||| ||||||||||| |||||||||| |||||| | ||||||||||    
T  32212479 gagaaaatcagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagc 32212419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 3360 - 3595
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3360 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 3459  T
Q  120 ctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3460 ctaccggatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 3559  T
Q  220 ccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    |||||        ||| ||||||||||||||||||||||    
T  3560 ccaag---tttttccaatatacactagtgttccaacaat 3595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 258
Target Start/End: Complemental strand, 81175 - 80940
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  81175 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 81076  T
Q  120 ctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  81075 ctaccggatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 80976  T
Q  220 ccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    |||||        ||| ||||||||||||||||||||||    
T  80975 ccaag---tttttccaatatacactagtgttccaacaat 80940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 32010862 - 32011097
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32010862 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtatgat 32010961  T
Q  120 ctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32010962 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 32011061  T
Q  220 ccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    |||||        ||| ||||||||||||||||||||||    
T  32011062 ccaag---tttttccaatatacactagtgttccaacaat 32011097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 32016036 - 32016240
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32016036 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 32016135  T
Q  120 ctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32016136 ctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaattcactagtatact 32016235  T
Q  220 ccaag 224  Q
    |||||    
T  32016236 ccaag 32016240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 2165638 - 2165421
Alignment:
Q  7 ggagcagagaggagagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctac 106  Q
    |||| ||||| |||||||||| ||||||||| ||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2165638 ggagaagagatgagagaaaactagagaagagcatttgattctcaattttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 2165539  T
Q  107 tagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacatt-ccaaaggctccacaaa 205  Q
    |||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  2165538 tagagtgtgtgatctacccgatgtgagacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattcccaaagactccacaaa 2165439  T
Q  206 ctcactagtatactccaa 223  Q
    ||||||||||||||||||    
T  2165438 ctcactagtatactccaa 2165421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 103 - 257
Target Start/End: Complemental strand, 43998693 - 43998541
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43998693 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacatttcaaaggctccac 43998594  T
Q  203 aaactcactagtatactccaagnnnnnnnnccattatacactagtgttccaacaa 257  Q
    ||||  ||||||||||||||||         ||||||||||||||||||||||||    
T  43998593 aaaccaactagtatactccaagttttttt--cattatacactagtgttccaacaa 43998541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 103 - 256
Target Start/End: Complemental strand, 17955281 - 17955130
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17955281 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacacttcacactagtttctccatccttgtgtttacattccaaaggctccac 17955182  T
Q  203 aaactcactagtatactccaagnnnnnnnnccattatacactagtgttccaaca 256  Q
    |||   |||||||||||| |||        ||||||||||||||||||||||||    
T  17955181 aaaacaactagtatactctaag--tcttttccattatacactagtgttccaaca 17955130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 103 - 224
Target Start/End: Original strand, 24885324 - 24885445
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  24885324 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacattccaaagtctccac 24885423  T
Q  203 aaactcactagtatactccaag 224  Q
    | |   ||||||||||||||||    
T  24885424 ataacaactagtatactccaag 24885445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 103 - 260
Target Start/End: Complemental strand, 42513995 - 42513840
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||| | ||||||    
T  42513995 ctactagagtgtgtgatctatccaatgtgggacataaaattttcaattcacactttacactattttctacatccttgtgtttacattccaatgtctccac 42513896  T
Q  203 aaactcactagtatactccaagnnnnnnnnccattatacactagtgttccaacaatta 260  Q
    | |   ||||||||||||||||        ||| ||||||||||||||||||||||||    
T  42513895 ataacaactagtatactccaag--tttttgccaatatacactagtgttccaacaatta 42513840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 103 - 193
Target Start/End: Complemental strand, 21641273 - 21641184
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 193  Q
    |||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||  ||| ||||||||| ||||||||||||    
T  21641273 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactag-atctacatccttgtatttacattccaa 21641184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 24884982 - 24885064
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggattt 102  Q
    |||||||||||||||||| ||||||||||| |||||||||| |||||| | |||||||||||||| |||||||  ||||||||    
T  24884982 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaattccattcccgagctctctatttatagagaggattt 24885064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 21643907 - 21643835
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||| ||||||||||| |||||||||| |||||| | ||||||||| |||| |||||||    
T  21643907 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgaggtctctatttata 21643835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 21643092 - 21643020
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||| ||||||| ||||||||||| |||||||||| |||||| | ||||||||| |||| |||||||    
T  21643092 gagaaaaccaaagaagaggattcgattctcggttttggagtgaagaatcccattcccgaggtctctatttata 21643020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 21643467 - 21643395
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||| ||||||| ||||||||||| |||||||||| |||||| | ||||||||| |||| |||||||    
T  21643467 gagaaaaccaaagaagaggattcgattctcggttttggagtgaagaatcccattcccgaggtctctatttata 21643395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 43999056 - 43998984
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    ||||||| |||||||||| ||||||||||||||||| |||||||||||   | |||||||||||| |||||||    
T  43999056 gagaaaatcagagaagaggattcgattctcagttttagagtaaagaatgtaaatcccgagctctctatttata 43998984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 42514245 - 42514182
Alignment:
Q  21 agaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctc 84  Q
    ||||||||||||||||| ||||||||||| |||||||||| ||||||   ||||||||||||||    
T  42514245 agaaaaccagagaagaggattcgattctcggttttggagtgaagaatctcattcccgagctctc 42514182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 21641592 - 21641520
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||| ||||||| |||||||||||  ||||||||| |||||| | ||||||||| |||| |||||||    
T  21641592 gagaaaaccaaagaagaggattcgattctcgattttggagtgaagaatcccattcccgaggtctctatttata 21641520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 21641967 - 21641895
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||| ||||||| |||||||||||  ||||||||| |||||| | ||||||||| |||| |||||||    
T  21641967 gagaaaaccaaagaagaggattcgattctcgattttggagtgaagaatcccattcccgaggtctctatttata 21641895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 21642342 - 21642270
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||| ||||||| |||||||||||  ||||||||| |||||| | ||||||||| |||| |||||||    
T  21642342 gagaaaaccaaagaagaggattcgattctcgattttggagtgaagaatcccattcccgaggtctctatttata 21642270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 21642717 - 21642645
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||| ||||||| |||||||||||  ||||||||| |||||| | ||||||||| |||| |||||||    
T  21642717 gagaaaaccaaagaagaggattcgattctcgattttggagtgaagaatcccattcccgaggtctctatttata 21642645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 258
Target Start/End: Complemental strand, 42728379 - 42728144
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42728379 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 42728280  T
Q  120 ctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  42728279 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtaaact 42728180  T
Q  220 ccaagnnnnnnnnccattatacactagtgttccaacaat 258  Q
    |||||        ||| ||||||||||||||||||||||    
T  42728179 ccaag---tttttccaatatacactagtgttccaacaat 42728144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 44096638 - 44096842
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44096638 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 44096737  T
Q  120 ctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  44096738 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttttgtttacattccaaatgctccacaaactcactagtatact 44096837  T
Q  220 ccaag 224  Q
    |||||    
T  44096838 ccaag 44096842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 42723210 - 42723007
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42723210 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 42723111  T
Q  120 ctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  42723110 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtaaact 42723011  T
Q  220 ccaa 223  Q
    ||||    
T  42723010 ccaa 42723007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 40392589 - 40392806
Alignment:
Q  7 ggagcagagaggagagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctac 106  Q
    |||| ||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40392589 ggagaagagaggagagaaaatcagagaaaagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctac 40392688  T
Q  107 tagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaac 206  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  40392689 tagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacattgcaaaggctccacaaac 40392788  T
Q  207 tcactagtatactccaag 224  Q
    ||||||||||||||||||    
T  40392789 tcactagtatactccaag 40392806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 30 - 224
Target Start/End: Complemental strand, 44754355 - 44754161
Alignment:
Q  30 gagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctatccgatg 129  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44754355 gagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatg 44754256  T
Q  130 tgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 224  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  44754255 tgggacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatactccaag 44754161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 7 - 256
Target Start/End: Complemental strand, 40518297 - 40518043
Alignment:
Q  7 ggagcagagaggagagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttat----aaggaggattt 102  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    |||||||||||    
T  40518297 ggagaagagaggagagaaaacaagagaagagtattcgattctcagttttggagtgaagaatactattcacgagctctcaatttattaataaggaggattt 40518198  T
Q  103 ctactagagtgtgtgatctatcc-gatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctcca 201  Q
    |||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  40518197 ctactagagtgtgtgatctaccccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttatattccaaaggctcca 40518098  T
Q  202 caaactcactagtatactccaagnnnnnnnnccattatacactagtgttccaaca 256  Q
    ||||||||||| |||||||||||        ||||||||||||||||||||||||    
T  40518097 caaactcactattatactccaagtttttcctccattatacactagtgttccaaca 40518043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 30 - 258
Target Start/End: Complemental strand, 44759521 - 44759296
Alignment:
Q  30 gagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctatccgatg 129  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44759521 gagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatg 44759422  T
Q  130 tgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnn 229  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||         
T  44759421 tgggacataaaattttcaattcacactttacactaatttctccatccttatgtttacatgccaaaggctccacaaactcactagtatactccaagttttt 44759322  T
Q  230 nnnccattatacactagtgttccaacaat 258  Q
        |||||||||||||||||||||||||    
T  44759321 t---cattatacactagtgttccaacaat 44759296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 29 - 258
Target Start/End: Original strand, 40519925 - 40520160
Alignment:
Q  29 agagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttat----aaggaggatttctactagagtgtgtgatctatc 124  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||| |    
T  40519925 agagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttattcataaggaggatttctactagagtgtgtgatctacc 40520024  T
Q  125 c-gatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact-cca 222  Q
    | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  40520025 ccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccca 40520124  T
Q  223 agnnnnnnnnccattatacactagtgttccaacaat 258  Q
    ||        ||||||||||||||||||||||||||    
T  40520125 agtttttcctccattatacactagtgttccaacaat 40520160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 4163042 - 4162921
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4163042 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 4162943  T
Q  203 aaactcactagtatactccaag 224  Q
    ||||  ||||||||||||||||    
T  4162942 aaaccaactagtatactccaag 4162921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 28751168 - 28751047
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28751168 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 28751069  T
Q  203 aaactcactagtatactccaag 224  Q
    | |   ||||||||||||||||    
T  28751068 ataacaactagtatactccaag 28751047  T

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Target: chr2; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 266 - 359
Target Start/End: Original strand, 20934229 - 20934322
Alignment:
Q  266 ttaccaggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggaggtacaaat 359  Q
    ||||||||| ||||||||||| |||||||| |  ||||||||||||||||||| |||||||||||||||||||| || ||||||||| ||||||    
T  20934229 ttaccaggtcatgtaatagaccagattctgacttacttgccaattagggaagcagtgagaacaagtgttttatctaaaaaatggaggaacaaat 20934322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 256 - 359
Target Start/End: Original strand, 39273808 - 39273911
Alignment:
Q  256 aattagttatttaccaggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggaggtac 355  Q
    ||||||||  ||||| ||| ||||||||||  ||||||||||   |||||||||||||||||| ||||||||||||||||| |||| | |||||||||||    
T  39273808 aattagttgcttaccgggtcatgtaatagatcagattctgtcttgcttgccaattagggaagcagtgagaacaagtgttttgtccagccaatggaggtac 39273907  T
Q  356 aaat 359  Q
    ||||    
T  39273908 aaat 39273911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 4163403 - 4163331
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||| ||||||||||| |||||||||| |||||| | | |||||||||||| |||||||    
T  4163403 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatgcaaatcccgagctctctatttata 4163331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 266 - 359
Target Start/End: Original strand, 20952773 - 20952866
Alignment:
Q  266 ttaccaggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggaggtacaaat 359  Q
    ||||||||| ||||||||||  |||||||| |  |||||| ||||||||| || |||||||||||||||||||| |  ||||||||| ||||||    
T  20952773 ttaccaggtcatgtaatagatcagattctgacttacttgcaaattagggatgcagtgagaacaagtgttttatctagaaaatggaggaacaaat 20952866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 28751555 - 28751483
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||| ||||||| ||||||||||| |||||||||| ||||||   |||||||||||||| |||||||    
T  28751555 gagaaaaccaaagaagaggattcgattctcggttttggagtgaagaatctcattcccgagctctctatttata 28751483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 352
Target Start/End: Original strand, 20923236 - 20923332
Alignment:
Q  256 aattagttatttaccaggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggagg 352  Q
    ||||||||  ||||||| | || |||||||| |  |||| |||| |||| |||| | |||||| | |||||||||||||||||| ||||||||||||    
T  20923236 aattagttgcttaccagatcatataatagaccattttctttcacgcttgtcaatcaaggaagcagggagaacaagtgttttatctaacaaatggagg 20923332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 339
Target Start/End: Original strand, 20926881 - 20926917
Alignment:
Q  303 tgccaattagggaagctgtgagaacaagtgttttatc 339  Q
    |||||||||||||||| | ||||||||||||||||||    
T  20926881 tgccaattagggaagcagcgagaacaagtgttttatc 20926917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 31881 - 32085
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    |||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31881 gagaaaaccagataagagtattcgattctcagttttggtgtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 31980  T
Q  120 ctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31981 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 32080  T
Q  220 ccaag 224  Q
    |||||    
T  32081 ccaag 32085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 26709 - 26913
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 119  Q
    |||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26709 gagaaaaccagataagagtattcgattctcagttttggtgtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 26808  T
Q  120 ctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 219  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26809 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttttgtttacattccaaaggctccacaaactcactagtatact 26908  T
Q  220 ccaag 224  Q
    |||||    
T  26909 ccaag 26913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 8681 - 8560
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8681 ctactagagtgtgtgatctacccaatgtgggacataaaattttaaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 8582  T
Q  203 aaactcactagtatactccaag 224  Q
    | |   ||||||||||||||||    
T  8581 ataacaactagtatactccaag 8560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 9034 - 8962
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||| ||||||||| |||||||||||  ||||||||| |||||| | |||||||||||||| |||||||    
T  9034 gagaaaactagagaagaggattcgattctcgtttttggagtgaagaatcccattcccgagctctctatttata 8962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 74; Significance: 7e-34; HSPs: 4)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 13133 - 13012
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 202  Q
    |||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  13133 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 13034  T
Q  203 aaactcactagtatactccaag 224  Q
    | |   ||||||||||||||||    
T  13033 ataacaactagtatactccaag 13012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 103 - 193
Target Start/End: Complemental strand, 18590 - 18500
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 193  Q
    |||||||||||||||||||| || |||||||||||| |||||||||||||||||||| |||||||||| |||| |||||||||||||||||    
T  18590 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttatactagtttctacatcattgtgtttacattccaa 18500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 19018 - 18946
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| | ||| |||||||| |||||||    
T  19018 gagaaaaccagagaagagtattcgattctcggttttggagtaaagaataccaatcctgagctctctatttata 18946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 13565 - 13493
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 92  Q
    |||||||||||||||||| ||||||||||  |||||||||| |||||| | |||||||||||||| |||||||    
T  13565 gagaaaaccagagaagaggattcgattcttggttttggagtgaagaatcccattcccgagctctctatttata 13493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 37279 - 37361
Alignment:
Q  20 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttataaggaggattt 102  Q
    |||||||||||||||||| ||||||||||| |||||||||| ||||||   |||||||||||||| |||||||  ||||||||    
T  37279 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatctcattcccgagctctctatttatagagaggattt 37361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 37654 - 37712
Alignment:
Q  103 ctactagagtgtgtgatctatccgatgtgggacatataattttcaattcacactttaca 161  Q
    ||||| |||||||||||||| || |||||||||||| ||||||||||||||||||||||    
T  37654 ctactggagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttaca 37712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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