View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18790_low_13 (Length: 353)
Name: NF18790_low_13
Description: NF18790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18790_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 10 - 335
Target Start/End: Complemental strand, 16287442 - 16287117
Alignment:
| Q |
10 |
aagaatatccgtaatatacgaacaaataaacaatcctataaatacgtccaacatatgtgacttgcgccacatgttcttatttgttcggttttcaatgatt |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16287442 |
aagaaaatccgtaatatacgaacaaataaacaatcctataaatacgtccaacatatgtgacttgcgccacatgttcttatttgttcggttttcaatgatt |
16287343 |
T |
|
| Q |
110 |
ggagtaaggataggtctcaccacagtaaaacaaaaagctatgaacaaaaaggtagtgattactgagagataataaccttctccccaattattagcagcag |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16287342 |
ggagtaaggataggtctcaccacagtaaaacaaaaagctatgaacaaaaaggtagtgattactgagagataataaccttctccccaattattagcagcag |
16287243 |
T |
|
| Q |
210 |
gaatcaacaatgtaaacaaaacccaaccatatgcatcagttaacatagctgctgttaatgtatcctttccaagctttgtatacaaaagcttaagcttagc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16287242 |
gaatcaacaatgtaaacaaaacccaaccatatgcatcagttaacatagctgctgttaatgtatcctttccaagctttgtatacaaaagcttaagcttagc |
16287143 |
T |
|
| Q |
310 |
aagaattctagcaaggacggggaagc |
335 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
16287142 |
aagaattctagcaaggacggggaagc |
16287117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 10 - 335
Target Start/End: Original strand, 17262321 - 17262646
Alignment:
| Q |
10 |
aagaatatccgtaatatacgaacaaataaacaatcctataaatacgtccaacatatgtgacttgcgccacatgttcttatttgttcggttttcaatgatt |
109 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17262321 |
aagaaaatccgtaatatacgaaaaaataaacaatcctataaatacgtccaacatatgtgacttgcgccacatgttcttatttgttcggttttcaatgatt |
17262420 |
T |
|
| Q |
110 |
ggagtaaggataggtctcaccacagtaaaacaaaaagctatgaacaaaaaggtagtgattactgagagataataaccttctccccaattattagcagcag |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17262421 |
ggagtaaggataggtctcaccacagtaaaacaaaaagctatgaacaaaaaggtagtgattactgagagataataaccttctccccaattattagcagcag |
17262520 |
T |
|
| Q |
210 |
gaatcaacaatgtaaacaaaacccaaccatatgcatcagttaacatagctgctgttaatgtatcctttccaagctttgtatacaaaagcttaagcttagc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17262521 |
gaatcaacaatgtaaacaaaacccaaccatatgcatcagttaacatagctgctgttaatgtatcctttccaagctttgtatacaaaagcttaagcttagc |
17262620 |
T |
|
| Q |
310 |
aagaattctagcaaggacggggaagc |
335 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
17262621 |
aagaattctagcaaggacggggaagc |
17262646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University