View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18790_low_14 (Length: 348)
Name: NF18790_low_14
Description: NF18790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18790_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 34589936 - 34590059
Alignment:
| Q |
118 |
ttgacccatgtaaccattgttgaaaagattctaagatctttaacataaagatttaattatgttgttttctcaatagaagaattgaatgatgcaactacga |
217 |
Q |
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| T |
34589936 |
ttgacccatataaccattgttgaaaagattctaagatctttaacataaagatttaattatgttgttttctcaatagaagaattgaatgatgcaactacga |
34590035 |
T |
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| Q |
218 |
tgacaattgacgagttacaaagta |
241 |
Q |
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| T |
34590036 |
tgacaattgacgagttacaaagta |
34590059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 34589783 - 34589890
Alignment:
| Q |
12 |
ccaagaatatcaatgttctaataaggtgaagagagatcaacttcgagctctatgcgaagaatttgagaatcttagcatgaagattgatgaatctctaaag |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34589783 |
ccaaaaatatcaatgttctaataaggtgaagagagatcaacttcgagctctatgcgaagaatttgagaatcttagcatgaagattgatgaatctctaaag |
34589882 |
T |
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| Q |
112 |
gaatactt |
119 |
Q |
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|||||||| |
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| T |
34589883 |
gaatactt |
34589890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 34590700 - 34590750
Alignment:
| Q |
298 |
gtcactaataatgaaatgagcaacacaaacaaggtaacctacaacgcaagc |
348 |
Q |
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| T |
34590700 |
gtcactaataatgaaatgagcaacacaaacaaggtaacctacaacgcaagc |
34590750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 269
Target Start/End: Original strand, 34590668 - 34590701
Alignment:
| Q |
236 |
aaagtatacaagttgaataatcaaaacaatgggt |
269 |
Q |
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| T |
34590668 |
aaagcatacaagttgaataatcaaaacaatgggt |
34590701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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