View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18790_low_18 (Length: 299)
Name: NF18790_low_18
Description: NF18790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18790_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 12 - 280
Target Start/End: Complemental strand, 50558073 - 50557805
Alignment:
| Q |
12 |
agagatggattagagcgacgctgtataactagagatctgaagtggggggttcctgttccacatgaaaaatatagtaataaggttagattttccattccat |
111 |
Q |
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| T |
50558073 |
agagatggattagagcgacgctgtataactagagatctgaagtggggggttcctgttccacatgaaaaatatagtaataaggttagattttccattccat |
50557974 |
T |
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| Q |
112 |
tgggtctttcaaaatgtccgttattttttctttcagtaattttataaattgttttctttgaattggaaggttttctatgtgtggtttgatgcgcctattg |
211 |
Q |
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| T |
50557973 |
tgggtctttcaaaatgtccgttattttttctttcagtaattttataaattgttttctttgaattggaaggttttctatgtgtggtttgatgcgcctattg |
50557874 |
T |
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| Q |
212 |
gttatatatcaatcactgcatgctacacacatgattgggagaaatggtggaaaaacccagagaatgtgg |
280 |
Q |
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| T |
50557873 |
gttatatatcaatcaccgcatgctacacacatgattgggagaaatggtggaaaaacccagagaatgtgg |
50557805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 42 - 280
Target Start/End: Complemental strand, 29770360 - 29770130
Alignment:
| Q |
42 |
agagatctgaagtggggggttcctgttccacatgaaaaatatagtaataaggttagattttccattccattgggtctttcaaaatgtccgttattttttc |
141 |
Q |
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| T |
29770360 |
agagatctgaagtggggggttcctgttccacatgaaaaatacagtgacaaggtaag-ttttccctt----tgggtctttcaaaatgtcggttgttttt-c |
29770267 |
T |
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| Q |
142 |
tttcagtaattttataaattgttttctttgaattggaaggttttctatgtgtggtttgatgcgcctattggttatatatcaatcactgcatgctacacac |
241 |
Q |
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| T |
29770266 |
attcactaatttta--aactacattctttaaattggaaggtgttctatgtttggtttgatgctccgattggatatatatcaatcacggcaggctacacac |
29770169 |
T |
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| Q |
242 |
atgattgggagaaatggtggaaaaacccagagaatgtgg |
280 |
Q |
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| T |
29770168 |
gtgattgggagaaatggtggaaaaaccctgagaatgtgg |
29770130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 50568219 - 50568052
Alignment:
| Q |
16 |
atggattagagcgacgctgtataactagagatctgaagtggggggttcctgttccacatgaaaaatatagtaataaggttagattttccattccattggg |
115 |
Q |
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| T |
50568219 |
atggattagagcgacgctgtattaccagagatctgaagtggcgggtttctgttccgaatgaaaattgcagtaacaaggttagcttttccattt-----gg |
50568125 |
T |
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| Q |
116 |
tctttcaaaatgtccgttattttttctttcagtaattttataaattgttttctttgaattggaaggttttctat |
189 |
Q |
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| T |
50568124 |
tctttcaaaatgtcatttattttt-cattcagtaattttataaatgattttctttaaattggaaggttttctat |
50568052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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