View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18790_low_20 (Length: 250)

Name: NF18790_low_20
Description: NF18790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18790_low_20
NF18790_low_20
[»] scaffold0182 (2 HSPs)
scaffold0182 (13-250)||(25160-25397)
scaffold0182 (50-140)||(34421-34511)
[»] chr7 (19 HSPs)
chr7 (13-250)||(21763909-21764149)
chr7 (39-250)||(21628001-21628212)
chr7 (44-178)||(21771842-21771976)
chr7 (44-179)||(21714067-21714199)
chr7 (65-178)||(21651971-21652084)
chr7 (50-178)||(21725783-21725911)
chr7 (51-140)||(21740994-21741083)
chr7 (35-250)||(21808226-21808444)
chr7 (86-181)||(21788152-21788247)
chr7 (56-178)||(21704536-21704658)
chr7 (49-178)||(21785289-21785421)
chr7 (56-181)||(21992063-21992191)
chr7 (13-178)||(15713455-15713638)
chr7 (61-178)||(21663993-21664113)
chr7 (44-178)||(21681519-21681665)
chr7 (142-250)||(21646722-21646830)
chr7 (56-104)||(21622923-21622968)
chr7 (63-100)||(21689289-21689326)
chr7 (63-100)||(21791899-21791936)


Alignment Details
Target: scaffold0182 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 25160 - 25397
Alignment:
Q  13 aatatataatccgcattttgattttcgtaactttgcaagatcaatatccctcaaccattagtgtattgaatgaatgatggcatcccaaactattaaagaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  25160 aatatataatccgcattttgattttcgtaactttgcaagatcaatatccctcaaccattagtgtattgaatgaatgatggcagcccaaactcttaaagaa 25259  T
Q  113 aaaattgaggagctacaaaaatcaaagccaacaccccaaaattcaccacccaagatacaaagggtggcatattaccgcagaaagataccaaatttgagga 212  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25260 aaaattgaggagctacaaaaatcaaagcaaacaccccaaaattcaccacccaagatacaaagggtggcatattaccgcagaaagataccaaatttgagga 25359  T
Q  213 agtactacaaacccaagttggtgtcaataggtcctatc 250  Q
    ||||||||||||||||||||||||||||||||||||||    
T  25360 agtactacaaacccaagttggtgtcaataggtcctatc 25397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 34421 - 34511
Alignment:
Q  50 agatcaatatccctcaaccattagtgtattgaatgaatgatggcatcccaaactattaaagaaaaaattgaggagctacaaaaatcaaagc 140  Q
    |||||||| ||||||||||||||   |||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||||||||    
T  34421 agatcaatttccctcaaccattatcatattgaatgaatgatggcatccgaaactattaaagaaaaatttgtggaactacaaaaatcaaagc 34511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 21763909 - 21764149
Alignment:
Q  13 aatatataatccgcattttgatt------ttcgtaactttgcaagatcaatatccctcaaccattagtgtattgaatgaatgatggcatcccaaactatt 106  Q
    ||||||||||||||||||| |||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  21763909 aatatataatccgcattttcattcatgatttcgtaactttgcaagatcaatatccctcaaccattagtgtattgaatgaatgatggcatcccaaactctt 21764008  T
Q  107 aaagaaaaaattgaggagctacaaaaatcaaagccaacaccccaaaattcaccacccaagatacaaagggtggcatattaccgcagaaagataccaaatt 206  Q
    ||||||||| ||| ||||||||   ||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||  ||||||    
T  21764009 aaagaaaaatttgtggagctac---aatcaaagcaaacaccccaaaattcacgacccaagatacaaagggtgccatattaccgcagaaggatgtcaaatt 21764105  T
Q  207 tgaggaagtactacaaacccaagttggtgtcaataggtcctatc 250  Q
    || ||||| |||||| |||||||||| |||||||||||||||||    
T  21764106 tggggaagcactacacacccaagttgttgtcaataggtcctatc 21764149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 39 - 250
Target Start/End: Original strand, 21628001 - 21628212
Alignment:
Q  39 gtaactttgcaagatcaatatccctcaaccattagtgtattgaatgaatgatggcatcccaaactattaaagaaaaaattgaggagctacaaaaatcaaa 138  Q
    |||| |||| ||||||||||| |||||||||||| | ||||||| |||||||||||||||||||||||||||||||| ||| |||| || |||| |||||    
T  21628001 gtaagtttgaaagatcaatattcctcaaccattattatattgaaagaatgatggcatcccaaactattaaagaaaaatttgtggagttaaaaaattcaaa 21628100  T
Q  139 gccaacaccccaaaattcaccacccaagatacaaagggtggcatattaccgcagaaagataccaaatttgaggaagtactacaaacccaagttggtgtca 238  Q
    || |||||||| |||| ||| ||| |||||||||||||||||  || | | |||||| | |  | ||||  ||||||| |||  ||||||||| ||||||    
T  21628101 gcaaacaccccgaaatgcacgaccaaagatacaaagggtggccgatcatctcagaaataaaaaagattttgggaagtattactcacccaagtttgtgtca 21628200  T
Q  239 ataggtcctatc 250  Q
    ||||||||||||    
T  21628201 ataggtcctatc 21628212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 44 - 178
Target Start/End: Original strand, 21771842 - 21771976
Alignment:
Q  44 tttgcaagatcaatatccctcaaccattagtgtattgaatgaatgatggcatcccaaactattaaagaaaaaattgaggagctacaaaaatcaaagccaa 143  Q
    |||| ||||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||| ||| ||| |||||||||||||||| ||    
T  21771842 tttgaaagatcaatatccctcaaccattatcatattgaatgaatgatggcatccgaaactattaaagaaaaatttgtggaactacaaaaatcaaagcaaa 21771941  T
Q  144 caccccaaaattcaccacccaagatacaaagggtg 178  Q
     |||||||||||||  ||| |||||||||||||||    
T  21771942 taccccaaaattcaagaccgaagatacaaagggtg 21771976  T

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Target: chr7; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 44 - 179
Target Start/End: Original strand, 21714067 - 21714199
Alignment:
Q  44 tttgcaagatcaatatccctcaaccattagtgtattgaatgaatgatggcatcccaaactattaaagaaaaaattgaggagctacaaaaatcaaagccaa 143  Q
    |||| ||||||||||||||||||  ||||   ||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||| || ||    
T  21714067 tttgaaagatcaatatccctcaaatatta---tattgaatgaaggatggcatcccaaactattaaagaaaaatttgtggagctacaaaaatcaatgcaaa 21714163  T
Q  144 caccccaaaattcaccacccaagatacaaagggtgg 179  Q
    ||||||||||||||| ||| ||||||||||||||||    
T  21714164 caccccaaaattcacgaccgaagatacaaagggtgg 21714199  T

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Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 65 - 178
Target Start/End: Original strand, 21651971 - 21652084
Alignment:
Q  65 aaccattagtgtattgaatgaatgatggcatcccaaactattaaagaaaaaattgaggagctacaaaaatcaaagccaacaccccaaaattcaccaccca 164  Q
    |||||||| | |||||| ||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||| ||||||||||||||||| ||| |    
T  21651971 aaccattattatattgattgaatgatggcatcccaaactattaaagaaaaatttgtggaactacaaaaatcaaagcaaacaccccaaaattcacgaccaa 21652070  T
Q  165 agatacaaagggtg 178  Q
    ||||||||||||||    
T  21652071 agatacaaagggtg 21652084  T

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Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 50 - 178
Target Start/End: Original strand, 21725783 - 21725911
Alignment:
Q  50 agatcaatatccctcaaccattagtgtattgaatgaatgatggcatcccaaactattaaagaaaaaattgaggagctacaaaaatcaaagccaacacccc 149  Q
    |||||||| ||||||||||||||   |||||||||||||||||||||| ||||||||||||||||| ||| ||| |||||||||||||||| || | |||    
T  21725783 agatcaatttccctcaaccattatcatattgaatgaatgatggcatccgaaactattaaagaaaaatttgtggaactacaaaaatcaaagcaaatatccc 21725882  T
Q  150 aaaattcaccacccaagatacaaagggtg 178  Q
    ||||||||  ||| |||||||||||||||    
T  21725883 aaaattcaagaccgaagatacaaagggtg 21725911  T

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Target: chr7; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 51 - 140
Target Start/End: Original strand, 21740994 - 21741083
Alignment:
Q  51 gatcaatatccctcaaccattagtgtattgaatgaatgatggcatcccaaactattaaagaaaaaattgaggagctacaaaaatcaaagc 140  Q
    ||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  21740994 gatcaatattcctcaaccattattatattgaatgaatgatggcatcccaaactattaaagaaaaaattgtggagctacaaaaattaaagc 21741083  T

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Target: chr7; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 35 - 250
Target Start/End: Complemental strand, 21808444 - 21808226
Alignment:
Q  35 tttcgtaactttgcaagatcaatatccctcaaccattagtgtattgaatgaatgatggcatcccaaacta---ttaaagaaaaaattgaggagctacaaa 131  Q
    |||||| |||||||||||||||||| ||||| |||||| | ||||||||||||||||| |||||||||||   || || |||| |||| ||||||| |||    
T  21808444 tttcgttactttgcaagatcaatattcctcagccattattatattgaatgaatgatggaatcccaaactacccttgaaaaaaagattgtggagctaaaaa 21808345  T
Q  132 aatcaaagccaacaccccaaaattcaccacccaagatacaaagggtggcatattaccgcagaaagataccaaat-ttgaggaagtactacaaacccaagt 230  Q
    | ||||| | || |||||||||||||| ||| |||||||||||||||||  | || | |||||| | | ||||| |||| |||| | |||  ||||||||    
T  21808344 attcaaatcaaataccccaaaattcacgaccaaagatacaaagggtggctgagtatctcagaaatagaacaaatcttga-gaagcattactcacccaagt 21808246  T
Q  231 tggtgtcaataggtcctatc 250  Q
    |||| |||||||||||||||    
T  21808245 tggtatcaataggtcctatc 21808226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 86 - 181
Target Start/End: Original strand, 21788152 - 21788247
Alignment:
Q  86 atgatggcatcccaaactattaaagaaaaaattgaggagctacaaaaatcaaagccaacaccccaaaattcaccacccaagatacaaagggtggca 181  Q
    ||||||||||||||||||||||| |||||| ||| |||| ||||||||||||||| ||||||||||||||||| ||| || |||||||||||||||    
T  21788152 atgatggcatcccaaactattaatgaaaaatttgtggagttacaaaaatcaaagcaaacaccccaaaattcacgaccgaaaatacaaagggtggca 21788247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 178
Target Start/End: Original strand, 21704536 - 21704658
Alignment:
Q  56 atatccctcaaccattagtgtattgaatgaatgatggcatcccaaactattaaagaaaaaattgaggagctacaaaaatcaaagccaacaccccaaaatt 155  Q
    |||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||  ||| || |||| ||||||| |||||| | ||||     
T  21704536 atattcctcaaccattattatattgaatgaatgatggcatcccaaactattaaagaaaaatttgtcgagttaaaaaattcaaagcaaacacctccaaatg 21704635  T
Q  156 caccacccaagatacaaagggtg 178  Q
    ||| ||| |||||||||||||||    
T  21704636 cacgaccaaagatacaaagggtg 21704658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 49 - 178
Target Start/End: Original strand, 21785289 - 21785421
Alignment:
Q  49 aagatcaatatccctcaaccattagtgtattgaatgaatgatggcatcccaaacta---ttaaagaaaaaattgaggagctacaaaaatcaaagccaaca 145  Q
    ||||||||||||||| ||||||||   |||||||| ||||||| ||||||||||||   || || ||||||||| ||||||| |||| ||||||| || |    
T  21785289 aagatcaatatcccttaaccattatcatattgaatcaatgatgacatcccaaactacccttgaaaaaaaaattgtggagctagaaaattcaaagcaaata 21785388  T
Q  146 ccccaaaattcaccacccaagatacaaagggtg 178  Q
    ||||||||||||| ||| |||||||||||||||    
T  21785389 ccccaaaattcacgaccaaagatacaaagggtg 21785421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 56 - 181
Target Start/End: Original strand, 21992063 - 21992191
Alignment:
Q  56 atatccctcaaccattagtgtattgaatgaatgatggcatcccaaacta---ttaaagaaaaaattgaggagctacaaaaatcaaagccaacaccccaaa 152  Q
    |||| |||||||||||| | ||||||||||||||||||||||||||||    || |||||||||||| ||||||| |||| ||||||| || ||||||||    
T  21992063 atattcctcaaccattattatattgaatgaatgatggcatcccaaacttcccttgaagaaaaaattgtggagctagaaaattcaaagcaaataccccaaa 21992162  T
Q  153 attcaccacccaagatacaaagggtggca 181  Q
    |||||| | |  |||||||||||||||||    
T  21992163 attcacgaacacagatacaaagggtggca 21992191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 15713455 - 15713638
Alignment:
Q  13 aatatataatccgcattttgatt------ttcgtaactttgcaagatcaatatccctcaaccattagtgtattgaatgaatgatggcatcccaaacta-- 104  Q
    |||||||||||||||||||||||      ||||| ||||||||||||||||||||||||||||| | | || |||||||||||||||||| |||||||      
T  15713455 aatatataatccgcattttgattcataatttcgtgactttgcaagatcaatatccctcaaccatgattataatgaatgaatgatggcatcgcaaactacc 15713554  T
Q  105 -ttaaagaaaaaattgaggagctacaa--------aaat-caaagccaacaccccaaaattcaccacccaagatacaaagggtg 178  Q
     || || ||||||||| ||||||||||        |||| |||||| ||||||||||| ||||| ||| |||||||||||||||    
T  15713555 cttgaaaaaaaaattgtggagctacaaagttacataaatacaaagcaaacaccccaaagttcacgaccaaagatacaaagggtg 15713638  T

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Target: chr7; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 178
Target Start/End: Original strand, 21663993 - 21664113
Alignment:
Q  61 cctcaaccattagtgtattgaatgaatgatggcatcccaaacta---ttaaagaaaaaattgaggagctacaaaaatcaaagccaacaccccaaaattca 157  Q
    |||||||||||| | ||||||| |||||||||||||||||||||   || || ||||||||| ||||||| |||| ||||||| || |||||||| ||||    
T  21663993 cctcaaccattattatattgaaagaatgatggcatcccaaactacccttgaaaaaaaaattgtggagctagaaaattcaaagcaaataccccaaagttca 21664092  T
Q  158 ccacccaagatacaaagggtg 178  Q
    | ||| |||||||||||||||    
T  21664093 cgaccaaagatacaaagggtg 21664113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 44 - 178
Target Start/End: Original strand, 21681519 - 21681665
Alignment:
Q  44 tttgcaagatcaatatccctcaaccattagtgtattgaatgaatgatggcatcccaaacta---ttaaagaaaaaattgaggagctacaaaaat------ 134  Q
    |||| ||||||||||| |||||||||||| |  ||||||||||||||| ||||||||||||   || ||||||| |||| ||||||||||| ||          
T  21681519 tttgaaagatcaatattcctcaaccattattacattgaatgaatgatgtcatcccaaactacccttgaagaaaatattgtggagctacaaatatacatag 21681618  T
Q  135 ---caaagccaacaccccaaaattcaccacccaagatacaaagggtg 178  Q
       |||| | ||||||||||||||||| ||| |||||||||||||||    
T  21681619 atacaaatcaaacaccccaaaattcacgaccaaagatacaaagggtg 21681665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 250
Target Start/End: Original strand, 21646722 - 21646830
Alignment:
Q  142 aacaccccaaaattcaccacccaagatacaaagggtggcatattaccgcagaaaga-taccaaatttgaggaagtactacaaacccaagttggtgtcaat 240  Q
    ||||||||||||||||| ||| ||||||||||||||| || | || | |||||| |  || |||||||||| || | ||||  |||||||||||||||||    
T  21646722 aacaccccaaaattcacgaccaaagatacaaagggtgccacagtatctcagaaatagaacaaaatttgagg-agcattacacccccaagttggtgtcaat 21646820  T
Q  241 aggtcctatc 250  Q
    ||||||||||    
T  21646821 aggtcctatc 21646830  T

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Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 21622923 - 21622968
Alignment:
Q  56 atatccctcaaccattagtgtattgaatgaatgatggcatcccaaacta 104  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||    
T  21622923 atatccctcaaccatta---tattgaatgaatgatggcatcccaaacta 21622968  T

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Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 21689289 - 21689326
Alignment:
Q  63 tcaaccattagtgtattgaatgaatgatggcatcccaa 100  Q
    |||||||||| | |||||||||||||||||||||||||    
T  21689289 tcaaccattattatattgaatgaatgatggcatcccaa 21689326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 21791899 - 21791936
Alignment:
Q  63 tcaaccattagtgtattgaatgaatgatggcatcccaa 100  Q
    |||||||||| | |||||||||||||||||||||||||    
T  21791899 tcaaccattattatattgaatgaatgatggcatcccaa 21791936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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