View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18790_low_25 (Length: 225)
Name: NF18790_low_25
Description: NF18790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18790_low_25 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 31046163 - 31045939
Alignment:
| Q |
1 |
aatatttattgaagttgacggtagagagaaattattagcggttaaagtgacatttttagtcatttagaacccgcgtctcagatagatttgaactctgtcc |
100 |
Q |
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| T |
31046163 |
aatatttattaaagttgagggtagagagaaattattagtggttaaagtgacattgttagtcatttacaacccgcgtctcagatagatttgaactctgtcc |
31046064 |
T |
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| Q |
101 |
cttgaagttaaaaacgtcaaactcttatcactgagttaacatctaacacaaaagatcatattattatataatcatgatgatgcatgaggaataaaagcgg |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31046063 |
cttgaagttaaaaacgtcaaactcttaacactgagttaacatctaacacaaaagttcatattattatataatcatgatgatgcatgaggaataaaagcgg |
31045964 |
T |
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| Q |
201 |
ttgaaatgaattgtggccataggtt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
31045963 |
ttgaaatgaattgtggccataggtt |
31045939 |
T |
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