View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18790_low_3 (Length: 659)
Name: NF18790_low_3
Description: NF18790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18790_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 57 - 488
Target Start/End: Complemental strand, 3896317 - 3895885
Alignment:
| Q |
57 |
aaataattagcttcaaatttaagaagtattgcatagcaaaataatttttacttagaatgcatatcaggctatgtttcaagtaacagtgtaggttttcaac |
156 |
Q |
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| T |
3896317 |
aaataattagcttcaaatttaagaagtattgcatggcaaaataatttttacttagaatgcatatcaggctatgtttcaagaaactgtgtaggttttcagc |
3896218 |
T |
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| Q |
157 |
acattcagaaagtcggcactgttaagaaaggacaaaatgccacactcttgctagtcgaatgattaagattgtatcattagaagtcaatggattgtagtct |
256 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
3896217 |
acatttagaaagtcagcactgttaagaaaggacaaaatgccacactcttgctagttgaatgcttaagattgtatcattagaagtcaatgggttgtagtct |
3896118 |
T |
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| Q |
257 |
taccggtaatgttgtccacctttttctgatttcaccaagctcatttctttctttctctcccccaccaaaataacaacctgaaaaggctagcatatctggt |
356 |
Q |
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| T |
3896117 |
tactggtaatgttgtccacctttttctgatttcaccaagctcatttctttctttctctcccccaccaaaataacaacctgaaaaggctagcatatctggt |
3896018 |
T |
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| Q |
357 |
tcaaatctgcaataagctcatatctggttcatgaatgagattgttagtggcaattacaaa-----------gcatcccaaattcttatttctaacattgg |
445 |
Q |
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| T |
3896017 |
tcaaatctgcaataa--------aagaatcatga--gagattgttaattgcaattacaaaggatcctatgcgcatcccaaactcttatttctaacattgg |
3895928 |
T |
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| Q |
446 |
aatgaaacaagaaaatgtgttattaacgtattgttgttattga |
488 |
Q |
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| T |
3895927 |
aatgaaacaagaaaatgtgttaataatgtattgttgttattga |
3895885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 489 - 639
Target Start/End: Complemental strand, 3895728 - 3895578
Alignment:
| Q |
489 |
aaaacatcaaatggactgctatgaaacggtgagccatcttctgcattctcgtaacaagtgtttgaccaagttcttgtataggttttgtaaatctcaaagc |
588 |
Q |
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| T |
3895728 |
aaaacctcaaatggactgctatgaaacggtgagccatcttctgcattctcgtaacaattgtttgaccaagttcttgaataggttttgtgaatctcaaagc |
3895629 |
T |
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| Q |
589 |
atggaaattaacacggcatcatagtttttgtagctcgtcatcaaggtgatt |
639 |
Q |
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| T |
3895628 |
atggaaattaacacggcatcgtagtttttgtagctcgtcatcaaggtgatt |
3895578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 43364791 - 43364867
Alignment:
| Q |
285 |
atttcaccaagctcatttctttctttctctcccccaccaaaataacaacctgaaaaggctagcatatctggttcaaa |
361 |
Q |
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| T |
43364791 |
atttcaccaagttcttttctttccttttctcccccaccataatagcaaccagagaatgcaagcatatccggttcaaa |
43364867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 245 - 361
Target Start/End: Original strand, 41600471 - 41600587
Alignment:
| Q |
245 |
ggattgtagtcttaccggtaatgttgtccacctttttctgatttcaccaagctcatttctttctttctctcccccaccaaaataacaacctgaaaaggct |
344 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||||||||||||| | ||||||||| || |||||||||||||||||||||||||| || |
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| T |
41600471 |
ggattgtagtcttacaggcaatgttgtccacctttttctgatttcaccaagctcttgtctttctttttcacccccaccaaaataacaacctgaaaatgcc |
41600570 |
T |
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| Q |
345 |
agcatatctggttcaaa |
361 |
Q |
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| T |
41600571 |
agcatgtctggctcaaa |
41600587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 495 - 641
Target Start/End: Original strand, 41600903 - 41601049
Alignment:
| Q |
495 |
tcaaatggactgctatgaaacggtgagccatcttctgcattctcgtaacaagtgtttgaccaagttcttgtataggttttgtaaatctcaaagcatggaa |
594 |
Q |
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|||||||||||||||| |||||| |||||||| |||| ||| | |||| | |||||||||||| | |||| ||||||||||||||||||||||| | |
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| T |
41600903 |
tcaaatggactgctatataacggtttgccatctttcgcatcctcattacaattctttgaccaagttgtcgtattggttttgtaaatctcaaagcatgata |
41601002 |
T |
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| Q |
595 |
attaacacggcatcatagtttttgtagctcgtcatcaaggtgatttg |
641 |
Q |
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|||||||||||| | |||||||||||| ||||||||||||| ||||| |
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| T |
41601003 |
attaacacggcaacgtagtttttgtagttcgtcatcaaggtcatttg |
41601049 |
T |
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