View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18790_low_6 (Length: 462)
Name: NF18790_low_6
Description: NF18790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18790_low_6 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 24614979 - 24615422
Alignment:
| Q |
1 |
ttaagaaatttgtaataatatgtgacattttattgtctgtcgaaaactaatgttcacatctttttgatgtttgtttcatagtttaatatagaaagttaag |
100 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24614979 |
ttaagaaatttgtattaatatgtaacattttattgtctgtcgaaaactaatgttcacatctttttgatgtttgtttcatagtttaatatagaaagttaag |
24615078 |
T |
|
| Q |
101 |
taccaattctgcaggcttctttattaaattgctttattcttcagtcttgctaaattttgtggatttgttaatgctgtt---tttctgtcctattatgttg |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24615079 |
taccaattctgcaggcttctttattaaattgctttattcttcagtcttactaaattttgtggatttgttaatgctgttatgtttctgtcctattatgttg |
24615178 |
T |
|
| Q |
198 |
tgaatgtcaagttttgaattgtttttaaacatcaaaatctaatttcaagtattacaggactagttaataagtattacatgaatcatttcaaatatatata |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
24615179 |
tgaatgtcaagttttgaattgtttttaaacatcaaaatctaatttcaagtattacaggactagttaacaagtattacatgaatcatttcaaatatatata |
24615278 |
T |
|
| Q |
298 |
acaaaatcatgagaggaaatactggtttgtgaggaaaacaatgacaatatcatctgttttaaataatatggaaagcagattatgtcttcaagatcttggt |
397 |
Q |
| |
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| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24615279 |
agaaaatcatg-gaggaaatactggtctgtgaggaaaacaatgacaatatcatctgttttaaataatatagaaagcagattatgtcttcaagatcttggt |
24615377 |
T |
|
| Q |
398 |
aaacagagagttccaatatagaaaggggggctgaagatataaggaat |
444 |
Q |
| |
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|| | ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24615378 |
aa--atagagttccaatatagaaaggggggctgaagatataaggaat |
24615422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 24108683 - 24108442
Alignment:
| Q |
1 |
ttaagaaatttgtaataatatgtgacattttattgtctgtcgaaaacta-atgttcacatctttttgatgtttgtttcatagtttaatatagaaagttaa |
99 |
Q |
| |
|
|||||||||| ||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||| |
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|
| T |
24108683 |
ttaagaaattcgtatcaatatgtgacatttcattgtctgtcgaaaactatatgttcacatctttttgatgtttgtttcatcatttaatataaaaagttaa |
24108584 |
T |
|
| Q |
100 |
gtaccaattctgcaggcttctttattaaattgctttattcttcagtcttgctaaattttgtggatttgttaatgctgtt---tttctgtcctattatgtt |
196 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||| ||||| || ||||||| ||||||||| ||||||||||| ||| ||| ||||||| | |
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|
| T |
24108583 |
gtaccaactctgcatacttctttattaaattgctttaatcttctgt----ctaaattgtgtggatttcttaatgctgttatgtttttgttgtattatgat |
24108488 |
T |
|
| Q |
197 |
gtgaatgtcaagttttgaattgtttt--taaacatcaaaatctaat |
240 |
Q |
| |
|
|||||| |||||||||||||| |||| |||||||||||| ||||| |
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|
| T |
24108487 |
gtgaatttcaagttttgaattttttttataaacatcaaaaactaat |
24108442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 273 - 444
Target Start/End: Complemental strand, 24116047 - 24115881
Alignment:
| Q |
273 |
acatgaatcatttcaaatatatataacaaaatcatgagaggaaatactggtttgtgaggaaaacaatgacaatatc-atctgttttaaataatatggaaa |
371 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||| |
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|
| T |
24116047 |
acatgaatcatttcaaatata----agaaaatcatgagaggaaatactggtttgtgaggaaaacaatgaggatatctatctgttttaaataatataaaaa |
24115952 |
T |
|
| Q |
372 |
gcagattatgtcttcaagatcttggtaaacagagagttccaatatagaaaggggggctgaagatataaggaat |
444 |
Q |
| |
|
||||||||||| || ||||||||||||| | |||||| ||||||||||||||| | ||||||||||||||| |
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|
| T |
24115951 |
gcagattatgtttttaagatcttggtaa--atagagttgcaatatagaaaggggcaccgaagatataaggaat |
24115881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 24116393 - 24116258
Alignment:
| Q |
1 |
ttaagaaatttgtaataatatgtgacattttattgtctgtcgaaaactaatgttcacatctttttgatgtttgtttcatagtttaatatagaaagttaag |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||| |||||||| | |||||||||||| ||||||||||||| || ||||||||||||| || || |
|
|
| T |
24116393 |
ttaagaaatttgtatcaatatgtgacatttcattgtctatcgaaaaccattgttcacatcttgttgatgtttgttttatcgtttaatatagaatgtaaac |
24116294 |
T |
|
| Q |
101 |
taccaattctgcaggcttctttattaaattgcttta |
136 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
24116293 |
taccaattctgcaagcttcattattaaattgcttta |
24116258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 270 - 343
Target Start/End: Complemental strand, 24102272 - 24102197
Alignment:
| Q |
270 |
attacatgaatcatttcaaatatatata--acaaaatcatgagaggaaatactggtttgtgaggaaaacaatgaca |
343 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24102272 |
attacatgaatcatttcaaatatatatataagaaaatcatgagaggaaatactggtttgtgaggaaaataatgaca |
24102197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 23693540 - 23693671
Alignment:
| Q |
1 |
ttaagaaatttgtaataatatgtgacattttattgtctgtcgaaaactaatgttcacatctttttgatgtttgtttcatagtttaatatagaaagttaag |
100 |
Q |
| |
|
|||| ||||||||| ||||||| |||||| |||||| |||| ||||||||||||||||| | || || || ||| | ||||||||| ||| ||||| |
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|
| T |
23693540 |
ttaaaaaatttgtatcaatatgttacatttcattgtccgtcggaaactaatgttcacatcctgttaattttcgttctgtgatttaatataaaaatttaag |
23693639 |
T |
|
| Q |
101 |
taccaattctgcaggcttctttattaaattgcttta |
136 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| |
|
|
| T |
23693640 |
tacccgttc----ggcttctttattaaattgcttta |
23693671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 23711980 - 23712111
Alignment:
| Q |
1 |
ttaagaaatttgtaataatatgtgacattttattgtctgtcgaaaactaatgttcacatctttttgatgtttgtttcatagtttaatatagaaagttaag |
100 |
Q |
| |
|
|||| ||||||||| ||||||| |||||| |||||| |||| ||||||||||||||||| | || || || ||| | ||||||||| ||| ||||| |
|
|
| T |
23711980 |
ttaaaaaatttgtatcaatatgttacatttcattgtccgtcggaaactaatgttcacatcctgttaattttcgttctgtgatttaatataaaaatttaag |
23712079 |
T |
|
| Q |
101 |
taccaattctgcaggcttctttattaaattgcttta |
136 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| |
|
|
| T |
23712080 |
tacccgttc----ggcttctttattaaattgcttta |
23712111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 23730436 - 23730567
Alignment:
| Q |
1 |
ttaagaaatttgtaataatatgtgacattttattgtctgtcgaaaactaatgttcacatctttttgatgtttgtttcatagtttaatatagaaagttaag |
100 |
Q |
| |
|
|||| ||||||||| ||||||| |||||| |||||| |||| ||||||||||||||||| | || || || ||| | ||||||||| ||| ||||| |
|
|
| T |
23730436 |
ttaaaaaatttgtatcaatatgttacatttcattgtccgtcggaaactaatgttcacatcctgttaattttcgttctgtgatttaatataaaaatttaag |
23730535 |
T |
|
| Q |
101 |
taccaattctgcaggcttctttattaaattgcttta |
136 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| |
|
|
| T |
23730536 |
tacccgttc----ggcttctttattaaattgcttta |
23730567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 23748891 - 23749022
Alignment:
| Q |
1 |
ttaagaaatttgtaataatatgtgacattttattgtctgtcgaaaactaatgttcacatctttttgatgtttgtttcatagtttaatatagaaagttaag |
100 |
Q |
| |
|
|||| ||||||||| ||||||| |||||| |||||| |||| ||||||||||||||||| | || || || ||| | ||||||||| ||| ||||| |
|
|
| T |
23748891 |
ttaaaaaatttgtatcaatatgttacatttcattgtccgtcggaaactaatgttcacatcctgttaattttcgttctgtgatttaatataaaaatttaag |
23748990 |
T |
|
| Q |
101 |
taccaattctgcaggcttctttattaaattgcttta |
136 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| |
|
|
| T |
23748991 |
tacccgttc----ggcttctttattaaattgcttta |
23749022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 23690136 - 23690187
Alignment:
| Q |
85 |
aatatagaaagttaagtaccaattctgcaggcttctttattaaattgcttta |
136 |
Q |
| |
|
|||||| ||||||||||||||||| || ||||||| ||||||||||||||| |
|
|
| T |
23690136 |
aatataaaaagttaagtaccaattttgtcggcttctgtattaaattgcttta |
23690187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 24062373 - 24062424
Alignment:
| Q |
85 |
aatatagaaagttaagtaccaattctgcaggcttctttattaaattgcttta |
136 |
Q |
| |
|
|||||| ||||||||||||||||| || ||||||| ||||||||||||||| |
|
|
| T |
24062373 |
aatataaaaagttaagtaccaattttgtcggcttctgtattaaattgcttta |
24062424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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