View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18790_low_8 (Length: 433)
Name: NF18790_low_8
Description: NF18790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18790_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 4 - 418
Target Start/End: Original strand, 38620017 - 38620433
Alignment:
| Q |
4 |
acatcatcaatcatcaactctttttccagctgaactcgtgttgatttcaagatatcctgtgatgataggaatgaaaaagaaacaattattcaaccccttt |
103 |
Q |
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| T |
38620017 |
acatcatcaatcatcaactctttttccagctgaactcgtgttgatttcaagatatcctgtgatgataggaatgaaaaagaaacaattattcaaccccttt |
38620116 |
T |
|
| Q |
104 |
gaaagagcctcttcaataaagcacacaaaattttacatatgaacatcaattttgaaatccaggactaaggttaaaaggaactcatgaatcatataacaag |
203 |
Q |
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| T |
38620117 |
gaaagagcctcttcaataaagcacacaaaattttacatatgaacatcaattttgaaatccaggactaaggttaaaaggaactcatgaatcatataacaag |
38620216 |
T |
|
| Q |
204 |
tagacggattctcacgttaaactgcatgtacgtagcgtttgtctccaaccactgtttgtccataaccacaaatgccacacaataaagcaaatcaaatgcc |
303 |
Q |
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| T |
38620217 |
tagacggattctcacgttaaactgcatgtacgtagcgtttgtctccaaccactgtttatccataaccacaaatgccacacaataaagcaaatcaaatgcc |
38620316 |
T |
|
| Q |
304 |
cactcattttctgcaaatgttgaga--atatcataagaatggttataatgcagaggacgaaattgtgatcaatttaggttttccttctcaaaacaaaata |
401 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38620317 |
cactcattttctgcaaatgttgagaatatatcataagaatggttataatgcagaggacgaaattgtgatcaatttaggttttccttctcaaaacaaaata |
38620416 |
T |
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| Q |
402 |
aaacaatagtttctaat |
418 |
Q |
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||||||||||||||||| |
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| T |
38620417 |
aaacaatagtttctaat |
38620433 |
T |
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