View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18790_low_9 (Length: 431)
Name: NF18790_low_9
Description: NF18790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18790_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 12 - 415
Target Start/End: Complemental strand, 26219295 - 26218890
Alignment:
| Q |
12 |
aaaggtgagaagcattccattttagaaagcataaagctttcgtttcatctcttatgcatata--cctattctaactatgttttgagtagtggagaaggat |
109 |
Q |
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| T |
26219295 |
aaaggtgagaagcaatccattttagaaagcataaagctttcgtttcatctcttatgcatatatacctattctaactatgttttgagtagtggagaaggat |
26219196 |
T |
|
| Q |
110 |
acatatatgttgcatttgtacttaccaattggggttttttcttagcctccttcagtaatacttgaacctttcttgcttaatggttgctttcggacttgaa |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
26219195 |
acatatatgttgcatttgtacttaccaattggggttttttcttagcctccttcagtaatacttgaacctttcttgcttaatggctgctttcagacttgaa |
26219096 |
T |
|
| Q |
210 |
cgtttgatcagtcatgtaacagtctggtagctcggtcccatttcacctgagcaagttcaatgatgttgcaccaaactttaatgtttcgtttttaccaaat |
309 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26219095 |
cgtttgatcagtcatgcaacagtctggtagctcggtcccatttcacctgagcaagttcaatgatgttgcaccaaactttaatgtttcgtttttaccaaat |
26218996 |
T |
|
| Q |
310 |
gctccacatcagaatcatgaaagttgcgggttgtaagccattagaagcctgtatgatagatgctataatatttgggaggtttgtatgttgctgttgatga |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26218995 |
gctccacatcagaatcatgaaagttgcgggttgtaagccattagaagcctgtatgatagatgctataatatttgggaggtttgtatgttgctgttgatga |
26218896 |
T |
|
| Q |
410 |
agttgg |
415 |
Q |
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|||||| |
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| T |
26218895 |
agttgg |
26218890 |
T |
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