View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18791_high_5 (Length: 443)
Name: NF18791_high_5
Description: NF18791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18791_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 13 - 427
Target Start/End: Complemental strand, 48144174 - 48143761
Alignment:
| Q |
13 |
aatatagtaaaaattaatgtttgcctataaacaaatcattcggatttgtgtggtacaaggaagaaaagtctaaaaccttgtcaatttggaggaccattta |
112 |
Q |
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| T |
48144174 |
aatatagtaaaaattaatgtttgcctataaacaaatcattcggatttgtgtggtacaaggaagaaaagtctaaaaccttgtcaatttggaggaccattta |
48144075 |
T |
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| Q |
113 |
ttttataaacgtttccattttgattggtgattgttgattcattttaccatcctctgctgtttgcttgtcaatcttattaggatacaccccccactccctg |
212 |
Q |
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| T |
48144074 |
ttttataaacgtttccattttgattggtgattgttgattcattttaccatcctctgctgtttgcttgtcaatcttattaggatacaccccccactccctg |
48143975 |
T |
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| Q |
213 |
ttgttttaaaaggaccacctaactgaaaccnnnnnnnngaggggccatgaaaaaggtggggagtaaaatgctactgtatctggacttgtcacttcatata |
312 |
Q |
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| T |
48143974 |
ttgttttaaaaggaccacctaactaaaacaaaaaaaaagaggggccatgaaaaaggtggggagtaaaatgctactgtatctggacttgtcacttcatata |
48143875 |
T |
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| Q |
313 |
tatgttnnnnnnntcaaccattttttagcttagaggatgaaaaagtccatttcaaagattattgtaaatgttatgaaataaactcaaagtaaaagatcca |
412 |
Q |
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| T |
48143874 |
t-tttttaaaaaatcaaccattttttagcttaaaggatgaaaaatccaatttcaaagattattgtaaatgttatgaaataaactcaaagtaaaagatcca |
48143776 |
T |
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| Q |
413 |
agaagaagaagatga |
427 |
Q |
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| T |
48143775 |
agaagaagaagatga |
48143761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 421
Target Start/End: Complemental strand, 7280295 - 7280254
Alignment:
| Q |
380 |
atgttatgaaataaactcaaagtaaaagatccaagaagaaga |
421 |
Q |
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| T |
7280295 |
atgttatgaaataaactaaaagtacaagatcaaagaagaaga |
7280254 |
T |
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