View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18791_high_8 (Length: 367)
Name: NF18791_high_8
Description: NF18791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18791_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 17 - 352
Target Start/End: Complemental strand, 2268336 - 2268000
Alignment:
| Q |
17 |
cagggaaagcaacaataaactaagaccaggaaagcaactaacaaaaggaaagnnnnnnnnnn-catgaccagacaaatgcaatcaagagttaattaaaaa |
115 |
Q |
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| T |
2268336 |
cagggaaagcaacaataaactaagaccaggaaagcaactaacaaaaggaaagaaaaaaaaaaacatgaccagacaaatgcaatcaagagttaattaaaaa |
2268237 |
T |
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| Q |
116 |
tgcaaagttctagttatatcaatcacatgaacaaatgtgaagaaatcaagtatctaagttaattcccaacattactatcaattagaatgtcactatagaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
2268236 |
tgcaaagttctagttatatcaatcacatgaacaagtgtgaagaaatcaagtatctaagttaattcccaacattactatcaattacaatgtcattatagaa |
2268137 |
T |
|
| Q |
216 |
attttactagctaccgaagagcaaatgtgaagaatagttatgcaagggtaattatgaatagttatagatattatagtggaaaccagcatctacagctctt |
315 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2268136 |
attttactagttaccaaagagcaaatgtgaagaatagttatgcaagggtaattatgaatagttatagatattatagtggaaaccagcatctacagctctt |
2268037 |
T |
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| Q |
316 |
acggtacatggcttagactcagccctgtcattctatt |
352 |
Q |
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||||| ||||||||||||||||||||||||||||||| |
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| T |
2268036 |
acggtgcatggcttagactcagccctgtcattctatt |
2268000 |
T |
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