View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18791_high_9 (Length: 331)
Name: NF18791_high_9
Description: NF18791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18791_high_9 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 48486130 - 48485800
Alignment:
| Q |
1 |
ttatcgtgtgaataaattatgcaggatacaatatcttgttatggctgtggtttgacgttgccatgcaaaaccatgaagaagattaaggattcaagctgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48486130 |
ttatcgtgtgaataaattatgcaggatacaatatcttgttatggctgtggtttgacgttgccatgcaaaaccatgaagaagattaaggattcaagctgtg |
48486031 |
T |
|
| Q |
101 |
ctcctcagcattattgtaaatcttgtgcaaaggttcagagaatcactcatttaagatgtctttatttccttgccttaatttatctattgctgaaatttaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48486030 |
ctcctcagcattattgtaaatcttgtgcaaaggttcagagaatcactcatttaagatgtttttatttccttgccttaatttatctattgctgaaatttaa |
48485931 |
T |
|
| Q |
201 |
tttgcaacatttatggttctgttcttacagttacttaaatcgaaacaatactgtggcatttgcaaaaagatttggcaccattcagatgctggtgattggg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48485930 |
tttgcaacatttatggttctgttcttacagttacttaaatcgaaacaatactgtggcatttgcaaaaagatttggcaccattcagatgctggtgattggg |
48485831 |
T |
|
| Q |
301 |
tgagatactacttctcaattaggtctctgct |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
48485830 |
tgagatactacttctcaattaggtctctgct |
48485800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 225 - 305
Target Start/End: Original strand, 10034907 - 10034987
Alignment:
| Q |
225 |
ttacagttacttaaatcgaaacaatactgtggcatttgcaaaaagatttggcaccattcagatgctggtgattgggtgaga |
305 |
Q |
| |
|
|||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
10034907 |
ttacagttacgaaaatcaaaacaatattgtggaatttgcaaaaagatttggcaccattcagatggtgggaattgggtgaga |
10034987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 44 - 95
Target Start/End: Original strand, 10034726 - 10034777
Alignment:
| Q |
44 |
gctgtggtttgacgttgccatgcaaaaccatgaagaagattaaggattcaag |
95 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10034726 |
gctgtggtttgatgttgccatgcaaaaccatgaagaaggttaaggattcaag |
10034777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University