View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18791_low_1 (Length: 667)
Name: NF18791_low_1
Description: NF18791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18791_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 19 - 635
Target Start/End: Original strand, 40307623 - 40308238
Alignment:
| Q |
19 |
attttcccttccccattcattcatcatggaagcacttttccatgaataactttttataagaaattttataatataagtttgaaagaaaaactaaataaac |
118 |
Q |
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| T |
40307623 |
attttcccttccccattcattcatcatggaagcactttaccatgaataactttttataagaaattttataatataagtttgaaagaaaaactaaataaac |
40307722 |
T |
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| Q |
119 |
aacactaataaattcaatttgtttatactttatactcaatagatacttaccaaccgctcttgctcggaaaatctaccagcaaaacaactattttttattc |
218 |
Q |
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| T |
40307723 |
aacactaataaagtcaatttgtttatactttatactcaatggatacttaccaaccgctcttgctcggaaaatctaccagcaaaacaactattttttattc |
40307822 |
T |
|
| Q |
219 |
tcttaattgcaacatctgttcccctccatttgccatgatacacggttccaaaggttccagatcctaactcatgtagttcttcgatatcaccattctcaat |
318 |
Q |
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| T |
40307823 |
tcttaattgcaacatctgttcccctccatttgccatgatacacggttccaaaggttccagatcctaactcatgtagttcttcgatatcaccattctcaat |
40307922 |
T |
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| Q |
319 |
aatctatatttttacacatgaagtatttgggttaaacatggatacttgtggattttgatttgccttctttcaatctttctactnnnnnnnnnnnnnnnnn |
418 |
Q |
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| T |
40307923 |
aatctatatttttacacatgaagtatttgggttaaacatggatacttgtggattttgatttgccttctttcaatctttctactaaaaaaattaaaaagcc |
40308022 |
T |
|
| Q |
419 |
nnnnnttggaggaaagattagatctcaggtggaactagtcctagcacgatttgatcaaataatgaagaccactattagtcttcgtataattaacaacaat |
518 |
Q |
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| T |
40308023 |
aaaaattggaggaaagattagatctcaggtggaactagtcctagcacgatttgatcaaataatgaagactgctattagtcttcgtataattaacaacaat |
40308122 |
T |
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| Q |
519 |
ataattataataatgcaagtgttatttccagaacaataactttgaagtatctctttacatgtaaacctcatattactgaaattcaatacaacagtcatca |
618 |
Q |
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| T |
40308123 |
at-attataataatgcaagtgttatttccagaacaataactttgaagtatctctttgcatgtaaacctcatattactgaaattcaatacaacagtcatca |
40308221 |
T |
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| Q |
619 |
tcactctcatgtttcat |
635 |
Q |
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| T |
40308222 |
tcactctcatgtttcat |
40308238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 194 - 279
Target Start/End: Complemental strand, 48271310 - 48271225
Alignment:
| Q |
194 |
ccagcaaaacaactattttttattctcttaattgcaacatctgttcccctccatttgccatgatacacggttccaaaggttccaga |
279 |
Q |
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| T |
48271310 |
ccagcaaaacatctatcagttattcgcttgattgcaacatcagttcccctccattttccatgataaacagttccaaaggtaccaga |
48271225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 16018653 - 16018572
Alignment:
| Q |
203 |
caactattttttattctcttaattgcaacatctgttcccctccatttgccatgatacacggttccaaaggttccagatccta |
284 |
Q |
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||||| || |||||||| || || |||||||||||||| |||||||| ||||||||||| || ||||| || ||||| |||| |
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| T |
16018653 |
caactcttctttattcttttgatagcaacatctgttcctctccattttccatgatacacagtcccaaatgtaccagaaccta |
16018572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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