View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18791_low_11 (Length: 331)
Name: NF18791_low_11
Description: NF18791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18791_low_11 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 48486130 - 48485800
Alignment:
| Q |
1 |
ttatcgtgtgaataaattatgcaggatacaatatcttgttatggctgtggtttgacgttgccatgcaaaaccatgaagaagattaaggattcaagctgtg |
100 |
Q |
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| T |
48486130 |
ttatcgtgtgaataaattatgcaggatacaatatcttgttatggctgtggtttgacgttgccatgcaaaaccatgaagaagattaaggattcaagctgtg |
48486031 |
T |
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| Q |
101 |
ctcctcagcattattgtaaatcttgtgcaaaggttcagagaatcactcatttaagatgtctttatttccttgccttaatttatctattgctgaaatttaa |
200 |
Q |
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| T |
48486030 |
ctcctcagcattattgtaaatcttgtgcaaaggttcagagaatcactcatttaagatgtttttatttccttgccttaatttatctattgctgaaatttaa |
48485931 |
T |
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| Q |
201 |
tttgcaacatttatggttctgttcttacagttacttaaatcgaaacaatactgtggcatttgcaaaaagatttggcaccattcagatgctggtgattggg |
300 |
Q |
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| T |
48485930 |
tttgcaacatttatggttctgttcttacagttacttaaatcgaaacaatactgtggcatttgcaaaaagatttggcaccattcagatgctggtgattggg |
48485831 |
T |
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| Q |
301 |
tgagatactacttctcaattaggtctctgct |
331 |
Q |
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| T |
48485830 |
tgagatactacttctcaattaggtctctgct |
48485800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 225 - 305
Target Start/End: Original strand, 10034907 - 10034987
Alignment:
| Q |
225 |
ttacagttacttaaatcgaaacaatactgtggcatttgcaaaaagatttggcaccattcagatgctggtgattgggtgaga |
305 |
Q |
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| T |
10034907 |
ttacagttacgaaaatcaaaacaatattgtggaatttgcaaaaagatttggcaccattcagatggtgggaattgggtgaga |
10034987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 44 - 95
Target Start/End: Original strand, 10034726 - 10034777
Alignment:
| Q |
44 |
gctgtggtttgacgttgccatgcaaaaccatgaagaagattaaggattcaag |
95 |
Q |
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| T |
10034726 |
gctgtggtttgatgttgccatgcaaaaccatgaagaaggttaaggattcaag |
10034777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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