View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18791_low_12 (Length: 315)
Name: NF18791_low_12
Description: NF18791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18791_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 17 - 312
Target Start/End: Original strand, 52809382 - 52809677
Alignment:
| Q |
17 |
caactagccctgctagaagaaagaaaaacctatccatgtgccctttgtttaggttctctggaatccatcctttgtcattccctcttgcagtgattttcat |
116 |
Q |
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| T |
52809382 |
caactagccctgctagaagaaagaaaaacctatccatgtgccctttgtttaggttctctggaatccaacctttgtcattccctcttgcagtgattttcat |
52809481 |
T |
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| Q |
117 |
gaccacgtgaacaagcatgctactcacatagtttccaagagaaattgaagccatacaaagtgaactcccaaaactttttattccatctggtgcttgacca |
216 |
Q |
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| T |
52809482 |
gaccacgtgaacaagcatgctactcacatagtttccaagagaaattgaagccatacaaagtgaactcccaaaactttttattccatctggtgcttgacca |
52809581 |
T |
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| Q |
217 |
ttaaagaactccaattgacccacatacatgaaaacctctgaagcaccaatcagaacatactgtggaatttgatagaatatactcattgaacttctt |
312 |
Q |
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| T |
52809582 |
ttaaagaactccaattgacccacatacatgaaaacctctgaagcaccaatcagaacatactgtggaatttgatagaatatactcattgaacttctt |
52809677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 8e-58; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 132 - 301
Target Start/End: Complemental strand, 397928 - 397759
Alignment:
| Q |
132 |
catgctactcacatagtttccaagagaaattgaagccatacaaagtgaactcccaaaactttttattccatctggtgcttgaccattaaagaactccaat |
231 |
Q |
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| T |
397928 |
catgctgctaacatagtttccaagagaaattgatgccatacaaagtgaacttccaaagctttttatgccatcaggtgcttgaccattgaagaactccaac |
397829 |
T |
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| Q |
232 |
tgacccacatacatgaaaacctctgaagcaccaatcagaacatactgtggaatttgatagaatatactca |
301 |
Q |
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| T |
397828 |
tgacccacatacataaaaacttctgaagcaccaacaagaacatactgtggaatttgacagaatatactca |
397759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 132 - 301
Target Start/End: Original strand, 3802856 - 3803025
Alignment:
| Q |
132 |
catgctactcacatagtttccaagagaaattgaagccatacaaagtgaactcccaaaactttttattccatctggtgcttgaccattaaagaactccaat |
231 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| || ||||||||||| ||||||||||| |
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| T |
3802856 |
catgctgctaacatagtttccaagagaaattgaagccatacaaagtgaacttccaaagctttttatgccatccggggcttgaccattgaagaactccaac |
3802955 |
T |
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| Q |
232 |
tgacccacatacatgaaaacctctgaagcaccaatcagaacatactgtggaatttgatagaatatactca |
301 |
Q |
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| T |
3802956 |
tgacccacatacacaaaaacttctgaagccccaacaagaacatactgtggaatttgatagaatatactca |
3803025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 257
Target Start/End: Complemental strand, 2745916 - 2745785
Alignment:
| Q |
126 |
aacaagcatgctactcacatagtttccaagagaaattgaagccatacaaagtgaactcccaaaactttttattccatctggtgcttgaccattaaagaac |
225 |
Q |
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|||||||| |||||| ||||||||||| | || ||||||| ||||||||||| ||| ||||| ||||| | |||||| ||||| || ||| || ||| |
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| T |
2745916 |
aacaagcaagctactaacatagtttcctaatgatattgaagtcatacaaagtgcacttccaaagcttttcaatccatcaggtgcctgtgaattgaaaaac |
2745817 |
T |
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| Q |
226 |
tccaattgacccacatacatgaaaacctctga |
257 |
Q |
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| T |
2745816 |
tccaattgaccaacatacatgaaaacttctga |
2745785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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