View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18791_low_13 (Length: 313)
Name: NF18791_low_13
Description: NF18791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18791_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 25 - 297
Target Start/End: Complemental strand, 6351434 - 6351171
Alignment:
| Q |
25 |
tcaaattttcttgtttttgaatggcaactcgtgtggtcccgcaaaaaatcatcaagaatctccgtttcaaaaccactacaaagccattaaactcctccca |
124 |
Q |
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| T |
6351434 |
tcaaattttcttgttattgaatggcaactcgtgtggtcccacaaaagatcatcaagaatctccgtttcaaaaccaccacaaaaccattaaactcctccca |
6351335 |
T |
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| Q |
125 |
tccttcagccaccgccggcgtcgcttcccttctcgaaagagaacaaccttctccaccaccacaaccacaaccgtcacaccaacaaccgtcttatcttgac |
224 |
Q |
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| T |
6351334 |
tccttcggccaccgccgccgtcgcttcccttctcgaaagagaacaaccttctcca---------ccacaaccgtcacaccaacaaccatcttatcttgac |
6351244 |
T |
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| Q |
225 |
ctaaacgacggtgagagattattctcagctgttccaacgtccacgctgataagatcctcagccgttctgcatg |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6351243 |
ctaaacgacggtgagagattattctcagctgttccaacgtccacgctgataagatcctcagccgttctgcatg |
6351171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 24 - 297
Target Start/End: Complemental strand, 6328892 - 6328628
Alignment:
| Q |
24 |
atcaaattttcttgtttttgaatggcaactcgtgtggtcccgcaaaaaatcatcaagaatctccgtttcaaaaccactacaaagccattaaactcctccc |
123 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| || |
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| T |
6328892 |
atcaaaatttcttgtttttgaatggcaactcgtgtggtcccacaaaaaatcatcaagaatctccgtttcaaaaccaccacaaaaccattaaactcctacc |
6328793 |
T |
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| Q |
124 |
atccttcagccaccgccggcgtcgcttcccttctcgaaagagaacaaccttctccaccaccacaaccacaaccgtcacaccaacaaccgtcttatcttga |
223 |
Q |
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| T |
6328792 |
atccttcagccaccgccaccgtcgcctccattctcgaaagagaacaaccttctcca---------ccacaaccgtcacaccaacaaccatcttatcttga |
6328702 |
T |
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| Q |
224 |
cctaaacgacggtgagagattattctcagctgttccaacgtccacgctgataagatcctcagccgttctgcatg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6328701 |
cctaaacgacggtgagagattattctcagctgttccaacgtccacgctgataagatcctcagccgttctgcatg |
6328628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 25 - 297
Target Start/End: Complemental strand, 6336449 - 6336186
Alignment:
| Q |
25 |
tcaaattttcttgtttttgaatggcaactcgtgtggtcccgcaaaaaatcatcaagaatctccgtttcaaaaccactacaaagccattaaactcctccca |
124 |
Q |
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|
||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
6336449 |
tcaaattttcttgttattgaatggcaactcgtgtggtcccacaaaagatcatcaagaatctccgtttcaaaaccaccacaaaaccattaaactcctccca |
6336350 |
T |
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| Q |
125 |
tccttcagccaccgccggcgtcgcttcccttctcgaaagagaacaaccttctccaccaccacaaccacaaccgtcacaccaacaaccgtcttatcttgac |
224 |
Q |
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|||||| |||||||||| ||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
6336349 |
tccttcggccaccgccgccgtcgcttcccttattgaaagagaacaaccttctcca---------ccacaaccgtcacaccaacaaccatcttatcttgac |
6336259 |
T |
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| Q |
225 |
ctaaacgacggtgagagattattctcagctgttccaacgtccacgctgataagatcctcagccgttctgcatg |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6336258 |
ctaaacgacggtgagagattattctcagctgttccaacgtccacgctgataagatcctcagccgttctgcatg |
6336186 |
T |
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