View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18791_low_15 (Length: 294)
Name: NF18791_low_15
Description: NF18791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18791_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 195 - 278
Target Start/End: Complemental strand, 13037652 - 13037568
Alignment:
| Q |
195 |
ctgtgtggatcaataatg-acagtaaccnnnnnnnttcctattttaagaaaatcgtactctataaatttcaatgtgtttcttcat |
278 |
Q |
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| T |
13037652 |
ctgtgtggatcaataatggacagtaaccaaaaaaattcctattttaagaaaatcctactctataaatttcaatgtgtttcttcat |
13037568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 195 - 278
Target Start/End: Complemental strand, 13107660 - 13107576
Alignment:
| Q |
195 |
ctgtgtggatcaataatg-acagtaaccnnnnnnnttcctattttaagaaaatcgtactctataaatttcaatgtgtttcttcat |
278 |
Q |
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| T |
13107660 |
ctgtgtggatcaataatggacagtaaccaaaaaaattcctattttaagaaaatcctactctataaatttcaatgtgtttcttcat |
13107576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 13038030 - 13037984
Alignment:
| Q |
1 |
tttcatgaccttctacgaagatttgttccataaaatgagtgttattg |
47 |
Q |
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| T |
13038030 |
tttcatgaccttctacgaagatttgttccataaaatgagtgttattg |
13037984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 13108038 - 13107992
Alignment:
| Q |
1 |
tttcatgaccttctacgaagatttgttccataaaatgagtgttattg |
47 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13108038 |
tttcatgaccttctacgaagatttgttccataaaatgagtgttattg |
13107992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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