View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18791_low_17 (Length: 258)
Name: NF18791_low_17
Description: NF18791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18791_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 17184963 - 17185204
Alignment:
| Q |
1 |
ttccgagcagcttcagcaccacccaacaagtgaggaatgataaatttatcagccaaatccttattcaacataagcctaattaaaccgggacagatatcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17184963 |
ttccgagcagcttcagcaccacccaacaagtgaggaatgataaatttatcagccaaatccttattcaacataagcctaattaaaccgggacagatatcac |
17185062 |
T |
|
| Q |
101 |
tctttgtaagaaactttctgatctcccattgctgatcattaacagcatcgatttcttgacccccaagcttttgttcggtagcaatttgatcgcagccgca |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17185063 |
tctttgtaagaaactttttgatctcccattgctgatcattaacagcatcgatttcttgacccccaagcttttgttccgtagcaatttgatcgcagccgca |
17185162 |
T |
|
| Q |
201 |
ggagggtgtagacagtaagaaatggagacagacggtggaatc |
242 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
17185163 |
ggagggggtagacagtaagaaatggagacagactgtggaatc |
17185204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 17195483 - 17195242
Alignment:
| Q |
1 |
ttccgagcagcttcagcaccacccaacaagtgaggaatgataaatttatcagccaaatccttattcaacataagcctaattaaaccgggacagatatcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17195483 |
ttccgagcagcttcagcaccacccaacaagtgaggaatgataaatttatcagccaaatccttattcaacataagcctaattaaaccgggacagatatcac |
17195384 |
T |
|
| Q |
101 |
tctttgtaagaaactttctgatctcccattgctgatcattaacagcatcgatttcttgacccccaagcttttgttcggtagcaatttgatcgcagccgca |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17195383 |
tctttgtaagaaactttttgatctcccattgctgatcattaacagcattgatttcttgacccccaagcttttgttccgtagcaatttgatcgcagccgca |
17195284 |
T |
|
| Q |
201 |
ggagggtgtagacagtaagaaatggagacagacggtggaatc |
242 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
17195283 |
ggacggggtagacagtaagaaatggagacagacggtggaatc |
17195242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University