View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18791_low_18 (Length: 257)
Name: NF18791_low_18
Description: NF18791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18791_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 27 - 240
Target Start/End: Original strand, 15150913 - 15151125
Alignment:
| Q |
27 |
attgtatgcgtgttaaaaaactgggtgttacaaactattcaagttttgtataattgatctatttatatggatgataagtatttaatatattgatgaagan |
126 |
Q |
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| T |
15150913 |
attgtatgcgtgttaaaaaactgggtgttacaaacgattcaagttttgtataattgacctatttatatggatgataagtatttaatatattgatgaagat |
15151012 |
T |
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| Q |
127 |
nnnnnnattactataatattgatattgatgaggatatgattttgttagtgataatattttaattacacattcgacaatatttatgtgttcgaattttgat |
226 |
Q |
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| T |
15151013 |
ttttttattactata-tattgatattgatgaggatatgattctgttagtgataatattttaattacacattcgacaatatttatgtgttcgaattttgat |
15151111 |
T |
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| Q |
227 |
tctcaccatattag |
240 |
Q |
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|||||||||||||| |
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| T |
15151112 |
tctcaccatattag |
15151125 |
T |
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