View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18791_low_2 (Length: 618)
Name: NF18791_low_2
Description: NF18791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18791_low_2 |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 27511148 - 27511502
Alignment:
| Q |
1 |
caaccttgacaataatcacattattgtcgttcctttcctccgtagtttccccatcctttattttaggcaaaacaaccttgagcacactacatttcatcct |
100 |
Q |
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| T |
27511148 |
caaccttgacaataatcacattattgtcgttcctttcctccgtagtttccccatcctttattttaggcaaaacaaccttgagcacactacatttcatcct |
27511247 |
T |
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| Q |
101 |
agctctaatctgatcgatcttgtaatgtctcccagttaaatcatgcgtgcaagaggattcacgaccatctctcttgcctttaatgctaagagtattctga |
200 |
Q |
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| T |
27511248 |
agctctaatctgatcgatcttgtaatgtctcccagttaaatcatgcgtgcaagaggattcacgaccacctctctcgcctttaatgctaagagtattctga |
27511347 |
T |
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| Q |
201 |
tacacgttgatattcacatcttccttaaagcgtccaggcatatacatacggataagcatataatcctctgtctctctccaatggtagcggctttgaatga |
300 |
Q |
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| T |
27511348 |
tacacgttgatattcacatcttccttaaagcgtccaggcatatacatacggataagcatataatcctctgtctctctccaatggtagcggctttgaatga |
27511447 |
T |
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| Q |
301 |
ttcgaatcacctttttgttgaagacaacttgtttcatgaacagatcaaacacagc |
355 |
Q |
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| T |
27511448 |
ttcgaatcacctttttgttgaagacgacttgattcatgaacagatcaaacacagc |
27511502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 445 - 601
Target Start/End: Original strand, 27511586 - 27511742
Alignment:
| Q |
445 |
catctacctgagacaagaccattgcggttagtgtcagcgttctgaggcatgccactagtattaaaaggggcgaaggggctaatgagatggggattggctt |
544 |
Q |
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| T |
27511586 |
catctacctgagacaagaccattgcggttagtgtcagcgttctgaggcatgccactagtattaaaaggggcgaaggggctaatgagatggggattggctt |
27511685 |
T |
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| Q |
545 |
taaaatagcggtaagaggggcgaaggacagacaagacgatggggtaaaggtaagact |
601 |
Q |
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| T |
27511686 |
taaaatagcggtaagaggggcgaaggacagacaagacgatggggtaaaggtaagact |
27511742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 78069 - 77779
Alignment:
| Q |
1 |
caaccttgacaataatcacattattgtcgttcctttcctccgtagtttccccatcctttattttaggcaaaacaaccttgagcacactacatttcatcct |
100 |
Q |
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| T |
78069 |
caaccttgacaataatcacatcattgttgttccttccctctgtagtttccccatccttcattttaggcaaaacaaccttgagcacactacatttcatctt |
77970 |
T |
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| Q |
101 |
agctctaatctgatcgatcttgtaatgtctcccagttaaatcatgcgtgcaagaggattcacgaccatctctcttgcctttaatgctaagagtattctga |
200 |
Q |
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| T |
77969 |
agctgtaatctaataaatcttgtaatgtttcccggttaaatcaagtctgctagaggatttacgaccacctcgctcacctttaatgctaagagtgttctga |
77870 |
T |
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| Q |
201 |
tacacgttgatattcacatcttccttaaagcgtccaggcatatacatacggataagcatataatcctctgtctctctccaatggtagcggctttgaatga |
300 |
Q |
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| T |
77869 |
ta------------cacatcttccttaatgcgtccaggcatatacatacgtataagcatataatc--ctgtctctctccaacgttagcggctttgaatga |
77784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 446 - 562
Target Start/End: Complemental strand, 77584 - 77468
Alignment:
| Q |
446 |
atctacctgagacaagaccattgcggttagtgtcagcgttctgaggcatgccactagtattaaaaggggcgaaggggctaatgagatggggattggcttt |
545 |
Q |
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| T |
77584 |
atctacctgatacaagaccattgcggtgagtgtccgcgttttggggcatgccattgatatcaaaagaggcgacagggcttaggagatggggattggcttt |
77485 |
T |
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| Q |
546 |
aaaatagcggtaagagg |
562 |
Q |
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| T |
77484 |
gaaatagcggtaggagg |
77468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 55 - 243
Target Start/End: Original strand, 33702282 - 33702465
Alignment:
| Q |
55 |
cctttattttaggcaaaacaaccttgagcacactacatttcatcctagctctaatctgatcgatcttgtaatgtctcccagttaaatcatgcgtgcaaga |
154 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| | |||| ||||||||| | |||||||| |
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| T |
33702282 |
ccttcattttaggcaaaacaaccttgagcacactacatttcatcttagctctaatctgatcaatcttgtaagatttccctgttaaatcaagtgtgcaaga |
33702381 |
T |
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| Q |
155 |
ggattcacgaccatctctcttgcctttaatgctaagagtattctgatacacgttgatattcacatcttccttaaagcgtccaggcatat |
243 |
Q |
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| T |
33702382 |
ggatttacgaccacctctctcgcctttaatgctaagag-----tgttacacattgatattcacatcttccttcaagcgttcaggcatat |
33702465 |
T |
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