View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18791_low_3 (Length: 542)
Name: NF18791_low_3
Description: NF18791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18791_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 468; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 11 - 518
Target Start/End: Original strand, 21435329 - 21435836
Alignment:
| Q |
11 |
tattctgaatgttttaatattggagttcttttgcaacggtggtggtgataatccataacaaccctgtttgtattttttgcacagtgtatatgtatttttt |
110 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21435329 |
tattctgaatgttttaatattggagttcttttgcaacagtggtggtgataatccataacaaccctgtttgtattttttgcacagtgtataggtatttttt |
21435428 |
T |
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| Q |
111 |
gttgttctctaaagtttaggattatactagtatacgattaaaacaattactttttagattgttttttggtccactgttattatcgatacaaatgaagagt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21435429 |
gttgttctctaaagtttaggattatactagtatacgattaaattgattactttttagattgttttttggtccactgttattatcgatacacatgaagagt |
21435528 |
T |
|
| Q |
211 |
ttaatgagtgaaagattttgattattctattggtttcgtcaactaagtacttcaattatagtatcaggtgttaaacatattgcatttaagtaacagttga |
310 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21435529 |
ttaatgagtgaaagatttggcgtattctattggtttcgtcaactaagtacttcaattatagtatcaggtgttaaacatattgcatttaagtaacagttga |
21435628 |
T |
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| Q |
311 |
tgaaacagtgatagacaggaatatctaacatggacatcggacacgccttcaaactaaaacgtatgcgctacacaatattcaaacagtcaacaacagttga |
410 |
Q |
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| T |
21435629 |
tgaaacagtgatagacaggaatatctaacatggacatcggacacgccttcaaactaaaacgtatgcggtacacaatattcaaacagtcaacaacagttga |
21435728 |
T |
|
| Q |
411 |
atcaatggcacctttgatttcctaacagaagtgttcaaggagcttctgttgtcaaataatggcatcttaactggcaatgatattatagacaaagtttgta |
510 |
Q |
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| T |
21435729 |
atcaatggcacctttgatttcctaacagaagtgttcaaggagcttctgttgtcaaataatggcatcttaactggcaatgatattatagacaaagtttgta |
21435828 |
T |
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| Q |
511 |
tagatgac |
518 |
Q |
| |
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|||||||| |
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| T |
21435829 |
tagatgac |
21435836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 102 - 272
Target Start/End: Original strand, 27154097 - 27154269
Alignment:
| Q |
102 |
gtattttttgttgttctctaaagtttagg-----attatactagtatacgattaaaacaattactttttagattgttttttggtccactgttattatcga |
196 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| | | |||||||||| ||||||| |||| ||||||||| | |
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| T |
27154097 |
gtattttttgttgttctctaaagtttaggtcaggattatactagtatacgattaaat---tgagtttttagattcttttttgatccaaagttattatcaa |
27154193 |
T |
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| Q |
197 |
tacaaatgaagagtttaatgagtgaaagattttgattattctattggtttcgtcaactaagtacttcaattatagt |
272 |
Q |
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| T |
27154194 |
tagaaatgatgaggttaaggaatgcaagattttgcttattctattgctttcctcacctaattacttcaattatagt |
27154269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 419 - 495
Target Start/End: Original strand, 39495773 - 39495849
Alignment:
| Q |
419 |
cacctttgatttcctaacagaagtgttcaaggagcttctgttgtcaaataatggcatcttaactggcaatgatatta |
495 |
Q |
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| T |
39495773 |
cacctttgatttcttaacagaagtgttcaaggaacttctgttatcaaataatggcctcttaactggcaatgacatta |
39495849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 419 - 490
Target Start/End: Complemental strand, 39129328 - 39129257
Alignment:
| Q |
419 |
cacctttgatttcctaacagaagtgttcaaggagcttctgttgtcaaataatggcatcttaactggcaatga |
490 |
Q |
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| T |
39129328 |
cacctttgatttcttaacagaagtgttcaaggaacttctgttgtcaaataatggtctcttaactggcaatga |
39129257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 27153979 - 27154056
Alignment:
| Q |
11 |
tattctgaatgttttaatattggagttcttttgcaacggtggtggtgataatccataacaaccctgtttgtatttttt |
88 |
Q |
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|||||||||||||| |||||||| ||||||||||||| || | |||||||||||||||||| ||||| ||||| |||| |
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| T |
27153979 |
tattctgaatgtttgaatattggtgttcttttgcaacagttgcggtgataatccataacaaacctgtgtgtatatttt |
27154056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 27031141 - 27031204
Alignment:
| Q |
26 |
aatattggagttcttttgcaacggtggtggtgataatccataacaaccctgtttgtattttttg |
89 |
Q |
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| T |
27031141 |
aatattggagttcttgtacatcagaggtggtgataatccataacaatcctgtttgtattttttg |
27031204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 26956862 - 26956799
Alignment:
| Q |
173 |
tttttggtccactgttattatcgatacaaatgaagagtttaatgagtgaaagattttgattatt |
236 |
Q |
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||||||||| | |||| |||| ||| |||||||||||||||||| |||||||||||| ||||| |
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| T |
26956862 |
tttttggtcaattgttgttatagatgtaaatgaagagtttaatgaatgaaagattttgtttatt |
26956799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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