View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18791_low_4 (Length: 508)
Name: NF18791_low_4
Description: NF18791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18791_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 473; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Original strand, 38180014 - 38180506
Alignment:
| Q |
1 |
tcaatggtccgattggtatcattttgatcttaccaacatcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactttagggtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180014 |
tcaatggtccgattggtatcattttgatcttaccaacgtcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactttagggtt |
38180113 |
T |
|
| Q |
101 |
ggtttcttcatctagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacgactttca |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
38180114 |
ggtttcttcatatagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacggctttca |
38180213 |
T |
|
| Q |
201 |
agagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgctcatgaaagtaataatagtagatat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38180214 |
agagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgacgtagtcaccatgctcatgaaagtaataatagtagatat |
38180313 |
T |
|
| Q |
301 |
caaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgcgacccaaggaatgatgataccgtaggctaagca |
400 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180314 |
caaaaactgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgcgacccaaggaatgatgataccgtaggctaagca |
38180413 |
T |
|
| Q |
401 |
agtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaa |
493 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180414 |
agtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaa |
38180506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Original strand, 38184683 - 38185157
Alignment:
| Q |
1 |
tcaatggtccgattggtatcattttgatcttaccaacatcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactttagggtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
38184683 |
tcaatggtccgattggtatcattttgatcttaccaacatcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactgtagggtt |
38184782 |
T |
|
| Q |
101 |
ggtttcttcatctagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacgactttca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
38184783 |
ggtttcttcatctagaacttgaatttgttctttgaaagatcgagtagcgatagtatatatatttgaagataataaaaaagagggaaggtcacggctttca |
38184882 |
T |
|
| Q |
201 |
agagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgctcatgaaagtaataatagtagatat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
38184883 |
agagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgttcatgaaagtaataatagtagatat |
38184982 |
T |
|
| Q |
301 |
caaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgcgacccaaggaatgatgataccgtaggctaagca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38184983 |
caaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgcgacccaaggaatgatgataccgtaggctaagca |
38185082 |
T |
|
| Q |
401 |
agtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctc |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| ||||||||| |
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|
| T |
38185083 |
agtgaatggacgaccttcctgtttgccggagagtatgatatttgttagaaattctgagcagtggcacttaagctc |
38185157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 476
Target Start/End: Original strand, 38170200 - 38170675
Alignment:
| Q |
1 |
tcaatggtccgattggtatcattttgatcttaccaacatcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactttagggtt |
100 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||| || ||||| || | ||||||||| ||||||||||| ||||||||| | ||||| |
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|
| T |
38170200 |
tcaacggtccgatgggtatcattttgatcttaccaacatcaactttattcagtgcatccagttcaaactcctcaacggtgttcacaagtactcttgggtt |
38170299 |
T |
|
| Q |
101 |
ggtttcttcat-ctagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacgactttc |
199 |
Q |
| |
|
| ||||||||| | | |||| ||||||| ||||||| |||| || ||| | ||||||| ||||||||| |||||||||||||||||||| || |||| |
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|
| T |
38170300 |
gatttcttcattcaacaact-gaatttgctctttgagagatggaagagcaaaagtgtatgtatttgaagccaataaaaaagagggaaggtcgcggctttt |
38170398 |
T |
|
| Q |
200 |
aagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgctcatgaaagtaataatagtagata |
299 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||| | ||| |
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|
| T |
38170399 |
aagagagaatgacaatcccggtaatgatattaaacacgtttcatcctttgatttgtttgtgatgtagtcaccgtgttcatgaaagtaataatagaatata |
38170498 |
T |
|
| Q |
300 |
tcaaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgcgacccaaggaatgatgataccgtaggctaagc |
399 |
Q |
| |
|
||||| |||||||| ||||||||||| || || | ||||||||||||||||||| |||||||||| | |||| | || |||| | |||| ||||| |
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|
| T |
38170499 |
tcaaacaccgttgctgcttgaatccacaacagtgttgatgggaggtgaagctcatgtgccaccttgggagcccatgaaagtatgagagtgtagattaagc |
38170598 |
T |
|
| Q |
400 |
aagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctca |
476 |
Q |
| |
|
||||||||||| || ||| |||||| |||||| |||||||||||||||||||| |||| ||| ||| ||| |||| |
|
|
| T |
38170599 |
aagtgaatggatgattttcttgtttggaggagagaatgatatttgtgagaaattctgagccgcgacgcgtaaactca |
38170675 |
T |
|
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