View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18791_low_6 (Length: 413)
Name: NF18791_low_6
Description: NF18791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18791_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 41122919 - 41122519
Alignment:
| Q |
1 |
cctgttgcaaaataattgcaggatattgagacgttttattgtaagaattgtgaatatcgtcagcatcaatgctttgcatgtggcgagctgggttcttctg |
100 |
Q |
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| T |
41122919 |
cctgttgcaaaataattgcaggatattgagacgttttattgtaagaattgtgaatatcatcagcatcaatgctttgcatgtggcgagctgggttcttctg |
41122820 |
T |
|
| Q |
101 |
ataaagataaggatgctgaggtatttctttagaaaataaagtagctttctctcattgattattcatgtatatgtttttcattgctgaatgatgatgtacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41122819 |
ataaagataaggatgctgaggtatttctttagaaaataaagtagctttctctcattgattattcatgtatatgtttttcattgctgaatgatg---tacc |
41122723 |
T |
|
| Q |
201 |
ccgttatcctagttagtctttttaaaacaatatttcttattccaaattttatattaaaatgaaagagctttcggcatatttgcctctgctttcatgtgta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41122722 |
ccgttatcctagttagtctttttaaaacaatatttcttattccaaattttatattaaaatgaaagagcttttggcatatttgcctctgctttcatgtgta |
41122623 |
T |
|
| Q |
301 |
attgaagattttggttatgtttgtgacatcttttggtaaatttaaacatcaatgaaataaaccatccagtccagggaggataggtgattgaagctgatat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
41122622 |
attgaagattttggttatgtttgtgacatcttttggtaaatttaaacatcaatgaaataaaccatccagtccagggaggataggtgattgaagctgattt |
41122523 |
T |
|
| Q |
401 |
tctt |
404 |
Q |
| |
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|||| |
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|
| T |
41122522 |
tctt |
41122519 |
T |
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