View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18791_low_7 (Length: 394)

Name: NF18791_low_7
Description: NF18791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18791_low_7
NF18791_low_7
[»] chr4 (2 HSPs)
chr4 (296-379)||(27070900-27070983)
chr4 (296-379)||(27150986-27151069)
[»] chr5 (4 HSPs)
chr5 (7-70)||(33827503-33827566)
chr5 (297-347)||(11129216-11129266)
chr5 (71-145)||(33827465-33827537)
chr5 (14-55)||(17895652-17895693)
[»] chr2 (4 HSPs)
chr2 (11-70)||(44686228-44686287)
chr2 (11-70)||(27648359-27648418)
chr2 (71-145)||(44686253-44686325)
chr2 (71-143)||(27648323-27648393)
[»] chr1 (6 HSPs)
chr1 (11-63)||(47833822-47833874)
chr1 (71-190)||(47833726-47833849)
chr1 (11-70)||(2079132-2079191)
chr1 (74-125)||(2079160-2079211)
chr1 (297-337)||(21431299-21431339)
chr1 (14-70)||(25588702-25588757)
[»] chr8 (3 HSPs)
chr8 (17-70)||(15051521-15051573)
chr8 (71-125)||(15051501-15051555)
chr8 (14-70)||(24542666-24542722)
[»] chr3 (2 HSPs)
chr3 (72-121)||(53834026-53834075)
chr3 (14-54)||(7910335-7910375)
[»] chr6 (1 HSPs)
chr6 (24-68)||(31405732-31405776)


Alignment Details
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 296 - 379
Target Start/End: Complemental strand, 27070983 - 27070900
Alignment:
Q  296 gaaatagttgttacaaagaccaaatcaaagcttggactaaaaacaagtaaaagccattcaataagcatttcaacatgtgtaaaa 379  Q
    ||||||||||||| |||||||||||||||||||||| ||||| |||| ||||| ||||| |||| |||||||||||||||||||    
T  27070983 gaaatagttgttataaagaccaaatcaaagcttggattaaaagcaagaaaaagtcattcgataatcatttcaacatgtgtaaaa 27070900  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 296 - 379
Target Start/End: Complemental strand, 27151069 - 27150986
Alignment:
Q  296 gaaatagttgttacaaagaccaaatcaaagcttggactaaaaacaagtaaaagccattcaataagcatttcaacatgtgtaaaa 379  Q
    ||||||||||||| |||||||||||||||||||||| ||||| |||| ||||| ||||| |||| |||||||||||||||||||    
T  27151069 gaaatagttgttataaagaccaaatcaaagcttggattaaaagcaagaaaaagtcattcgataatcatttcaacatgtgtaaaa 27150986  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 33827566 - 33827503
Alignment:
Q  7 tagataatactctccagaatacaacagtcgcttcttgctaacaccgcacgtagattagcaaggt 70  Q
    ||||||||||||||||| |||||||| ||||||||||||| |||||||||| ||||||||||||    
T  33827566 tagataatactctccaggatacaacaatcgcttcttgctagcaccgcacgtggattagcaaggt 33827503  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 347
Target Start/End: Original strand, 11129216 - 11129266
Alignment:
Q  297 aaatagttgttacaaagaccaaatcaaagcttggactaaaaacaagtaaaa 347  Q
    |||||||||||||||||||||||||||||| |||| ||||| |||||||||    
T  11129216 aaatagttgttacaaagaccaaatcaaagcctggagtaaaagcaagtaaaa 11129266  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 145
Target Start/End: Complemental strand, 33827537 - 33827465
Alignment:
Q  71 gcttcttcctaacaccgcaggtagattagcaaggtctcaggaaccacttatggatatgctcatgggaacttataa 145  Q
    ||||||| ||| ||||||| || |||||||||||||||| ||| |||||||||  |||||| |||||||||||||    
T  33827537 gcttcttgctagcaccgcacgtggattagcaaggtctcaagaatcacttatgg--atgctcttgggaacttataa 33827465  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 17895693 - 17895652
Alignment:
Q  14 tactctccagaatacaacagtcgcttcttgctaacaccgcac 55  Q
    |||||||||| |||||||| || |||||||||||||||||||    
T  17895693 tactctccaggatacaacaatcacttcttgctaacaccgcac 17895652  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 44686228 - 44686287
Alignment:
Q  11 taatactctccagaatacaacagtcgcttcttgctaacaccgcacgtagattagcaaggt 70  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||    
T  44686228 taatactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaaggt 44686287  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 27648418 - 27648359
Alignment:
Q  11 taatactctccagaatacaacagtcgcttcttgctaacaccgcacgtagattagcaaggt 70  Q
    ||||||||||||| |||||||||||||||||||||| |||||||| | ||||| ||||||    
T  27648418 taatactctccaggatacaacagtcgcttcttgctagcaccgcacatggattaacaaggt 27648359  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 145
Target Start/End: Original strand, 44686253 - 44686325
Alignment:
Q  71 gcttcttcctaacaccgcaggtagattagcaaggtctcaggaaccacttatggatatgctcatgggaacttataa 145  Q
    ||||||| ||| ||||||| || |||||||||||||||||||| |||||||||  ||||| ||||||||||||||    
T  44686253 gcttcttgctagcaccgcacgtggattagcaaggtctcaggaatcacttatgg--atgcttatgggaacttataa 44686325  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 143
Target Start/End: Complemental strand, 27648393 - 27648323
Alignment:
Q  71 gcttcttcctaacaccgcaggtagattagcaaggtctcaggaaccacttatggatatgctcatgggaacttat 143  Q
    ||||||| ||| |||||||  | ||||| ||||||||||  ||||||||||||  ||||||||||||||||||    
T  27648393 gcttcttgctagcaccgcacatggattaacaaggtctcaaaaaccacttatgg--atgctcatgggaacttat 27648323  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 47833874 - 47833822
Alignment:
Q  11 taatactctccagaatacaacagtcgcttcttgctaacaccgcacgtagatta 63  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  47833874 taatactctccagaatacaacagtcgcttcttgctagcaccgcacgtggatta 47833822  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 71 - 190
Target Start/End: Complemental strand, 47833849 - 47833726
Alignment:
Q  71 gcttcttcctaacaccgcaggtagattagcaaggtctcaggaaccacttatggatatgctcatgggaacttataa------nnnnnnnattagtgactaa 164  Q
    ||||||| ||| ||||||| || ||||| | ||||||||| ||||||||||||  ||||||||||||||||||||             ||||||||||||    
T  47833849 gcttcttgctagcaccgcacgtggattaacgaggtctcagaaaccacttatgg--atgctcatgggaacttataatttgttatttgttattagtgactaa 47833752  T
Q  165 ataaaataagagatgaaagaaaccat 190  Q
    ||||||||||||||||||||| ||||    
T  47833751 ataaaataagagatgaaagaagccat 47833726  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 2079132 - 2079191
Alignment:
Q  11 taatactctccagaatacaacagtcgcttcttgctaacaccgcacgtagattagcaaggt 70  Q
    ||||| ||||||| ||||||||||| | |||| ||||||||||||||| |||||||||||    
T  2079132 taatattctccaggatacaacagtcacgtcttactaacaccgcacgtaaattagcaaggt 2079191  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 2079160 - 2079211
Alignment:
Q  74 tcttcctaacaccgcaggtagattagcaaggtctcaggaaccacttatggat 125  Q
    |||| ||||||||||| ||| ||||||||||||||| ||||||||| |||||    
T  2079160 tcttactaacaccgcacgtaaattagcaaggtctcatgaaccacttttggat 2079211  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 337
Target Start/End: Original strand, 21431299 - 21431339
Alignment:
Q  297 aaatagttgttacaaagaccaaatcaaagcttggactaaaa 337  Q
    |||||||| ||||||||||||||||||||  ||||||||||    
T  21431299 aaatagttattacaaagaccaaatcaaagtgtggactaaaa 21431339  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 25588757 - 25588702
Alignment:
Q  14 tactctccagaatacaacagtcgcttcttgctaacaccgcacgtagattagcaaggt 70  Q
    |||||||||||||||| | ||| |||||||||| ||||||||||  |||||||||||    
T  25588757 tactctccagaataca-cggtcacttcttgctagcaccgcacgtgaattagcaaggt 25588702  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 15051573 - 15051521
Alignment:
Q  17 tctccagaatacaacagtcgcttcttgctaacaccgcacgtagattagcaaggt 70  Q
    ||||||||||| |||||||||||||||||| |||||||||| ||||||||||||    
T  15051573 tctccagaata-aacagtcgcttcttgctagcaccgcacgtggattagcaaggt 15051521  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 15051555 - 15051501
Alignment:
Q  71 gcttcttcctaacaccgcaggtagattagcaaggtctcaggaaccacttatggat 125  Q
    ||||||| ||| ||||||| || ||||||||||||||||| ||||||||||||||    
T  15051555 gcttcttgctagcaccgcacgtggattagcaaggtctcagaaaccacttatggat 15051501  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 24542722 - 24542666
Alignment:
Q  14 tactctccagaatacaacagtcgcttcttgctaacaccgcacgtagattagcaaggt 70  Q
    ||||||||||||||||||| ||   |||||||| ||||||||||  |||||||||||    
T  24542722 tactctccagaatacaacaatcatatcttgctagcaccgcacgtgaattagcaaggt 24542666  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 53834026 - 53834075
Alignment:
Q  72 cttcttcctaacaccgcaggtagattagcaaggtctcaggaaccacttat 121  Q
    |||||||||| ||||||| ||  |||||||||||||||||||||||||||    
T  53834026 cttcttcctagcaccgcatgtgaattagcaaggtctcaggaaccacttat 53834075  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 7910335 - 7910375
Alignment:
Q  14 tactctccagaatacaacagtcgcttcttgctaacaccgca 54  Q
    |||||| ||| ||||||||||| ||||||||||||||||||    
T  7910335 tactcttcaggatacaacagtcacttcttgctaacaccgca 7910375  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 31405732 - 31405776
Alignment:
Q  24 aatacaacagtcgcttcttgctaacaccgcacgtagattagcaag 68  Q
    |||||||||||| |||||||||||||||||||||  |||||||||    
T  31405732 aatacaacagtcacttcttgctaacaccgcacgtgaattagcaag 31405776  T

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