View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18791_low_8 (Length: 391)

Name: NF18791_low_8
Description: NF18791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18791_low_8
NF18791_low_8
[»] chr1 (5 HSPs)
chr1 (195-391)||(17184788-17184984)
chr1 (195-391)||(17195462-17195658)
chr1 (10-196)||(17184563-17184750)
chr1 (39-196)||(17195696-17195854)
chr1 (194-278)||(17619799-17619883)


Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 195 - 391
Target Start/End: Original strand, 17184788 - 17184984
Alignment:
Q  195 ttgatcccagcgaaggccgatttgatcacctttattcaatttccttcttttaacaaactcttcgatccaagtcttcgtgaagacatagtatttgtctgaa 294  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17184788 ttgatcccagcgaaggccgatttgatcgcctttattcaatttccttcttttaacaaactcttcgatccaagtcttcgtgaagacatagtatttgtctgaa 17184887  T
Q  295 gcccatattttgaaaactagcaaatgtagttctttttcgtcaaagtcccaaacattaacttgcactccttcttttttccgagcagcttcagcaccac 391  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  17184888 gcccatattttgaaaactagcgaatgtagttctttttcgtcaaagtcccaaactttaacttgtactccttcttttttccgagcagcttcagcaccac 17184984  T

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Target: chr1; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 195 - 391
Target Start/End: Complemental strand, 17195658 - 17195462
Alignment:
Q  195 ttgatcccagcgaaggccgatttgatcacctttattcaatttccttcttttaacaaactcttcgatccaagtcttcgtgaagacatagtatttgtctgaa 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17195658 ttgatcccagcgaaggccgatttgatcacctttattcaatttccttcttttaataaactcttcgatccaagtcttcgtgaagacatagtatttgtctgaa 17195559  T
Q  295 gcccatattttgaaaactagcaaatgtagttctttttcgtcaaagtcccaaacattaacttgcactccttcttttttccgagcagcttcagcaccac 391  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  17195558 gcccatattttgaaaactagcgaatgtagttctttttcgtcaaagtcccaaactttaacttgtactccttcttttttccgagcagcttcagcaccac 17195462  T

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Target: chr1; HSP #3
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 17184563 - 17184750
Alignment:
Q  10 aacaatatagctggcaacaaaaaaccttaaccaacgacacatcaacattaacagatataaagtag-caatgatcaaaagaaattcttaacgttaatcaaa 108  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  17184563 aacaatctggctggcaacaaaaaaccttaaccaacgacacatcaacattaacagatataaagtaggcaatgatcaaaagaaattcttaacgttaattaaa 17184662  T
Q  109 aacttaattcaaaacaattacgaagtgcatcaaagcaatcaagtagacattgaaatcaacacctatgaagaattacaaactaagattt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17184663 aacttaattcaaaacaattacgaagtgcatcaaagcaatcaagtagacattgaaatcaacacctatgaagaattacaaactaagattt 17184750  T

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Target: chr1; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 39 - 196
Target Start/End: Complemental strand, 17195854 - 17195696
Alignment:
Q  39 accaacgacacatcaacattaacagatataaagtag-caatgatcaaaagaaattcttaacgttaatcaaaaacttaattcaaaacaattacgaagtgca 137  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  17195854 accaacgacacatcaacattaacagatataaagtaggcaatgatcaaaagaaattcttaacgttaatcaaaaacttaattcaaaacaattacgaagtgaa 17195755  T
Q  138 tcaaagcaatcaagtagacattgaaatcaacacctatgaagaattacaaactaagattt 196  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  17195754 tcaaagcaatcaagtagacattgtaagcaacacctatgaagaattacaaactaagattt 17195696  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 194 - 278
Target Start/End: Complemental strand, 17619883 - 17619799
Alignment:
Q  194 tttgatcccagcgaaggccgatttgatcacctttattcaatttccttcttttaacaaactcttcgatccaagtcttcgtgaagac 278  Q
    |||||||||| ||||| ||||||||||| ||||| |||| || |||||| ||||||||||||| | |||||||||| ||||||||    
T  17619883 tttgatcccatcgaagaccgatttgatcgcctttcttcagttcccttctgttaacaaactctttggtccaagtcttggtgaagac 17619799  T

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